Wall clock time and date at job start Wed Apr 1 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37097 * 120.00084 * 2 1 4 4 H 1.08007 * 119.99735 * 142.82335 * 3 2 1 5 5 C 1.38948 * 120.00337 * 322.82863 * 3 2 1 6 6 N 1.31408 * 120.00254 * 158.40420 * 5 3 2 7 7 Si 1.86804 * 119.99482 * 338.40669 * 5 3 2 8 8 H 1.48499 * 109.47152 * 95.72132 * 7 5 3 9 9 H 1.48500 * 109.46875 * 215.71800 * 7 5 3 10 10 H 1.48495 * 109.47251 * 335.71975 * 7 5 3 11 11 C 1.34786 * 120.00106 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00021 * 179.97438 * 11 2 1 13 13 C 1.50698 * 119.99698 * 0.02562 * 11 2 1 14 14 C 1.50699 * 109.46879 * 179.97438 * 13 11 2 15 15 C 1.33446 * 122.71611 * 124.99677 * 14 13 11 16 16 S 1.76167 * 108.06885 * 179.97438 * 15 14 13 17 17 C 1.70968 * 90.34037 * 359.97438 * 16 15 14 18 18 N 1.38898 * 124.94253 * 179.97438 * 17 16 15 19 19 C 1.34772 * 120.00122 * 0.02935 * 18 17 16 20 20 O 1.21554 * 120.00051 * 359.97438 * 19 18 17 21 21 C 1.47796 * 119.99656 * 179.97438 * 19 18 17 22 22 C 1.39602 * 120.14942 * 359.72206 * 21 19 18 23 23 C 1.37952 * 119.84869 * 179.72273 * 22 21 19 24 24 C 1.38364 * 120.14831 * 0.55221 * 23 22 21 25 25 C 1.38366 * 120.29790 * 359.72901 * 24 23 22 26 26 C 1.37951 * 120.14828 * 359.97438 * 25 24 23 27 27 N 1.29645 * 110.11091 * 0.02562 * 17 16 15 28 28 H 1.08998 * 109.47150 * 265.13346 * 1 2 3 29 29 H 1.09000 * 109.47269 * 25.13185 * 1 2 3 30 30 H 1.09000 * 109.46856 * 145.13509 * 1 2 3 31 31 H 0.97000 * 119.99934 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47292 * 59.99555 * 13 11 2 33 33 H 1.09001 * 109.47309 * 299.99807 * 13 11 2 34 34 H 1.08011 * 125.96558 * 0.02562 * 15 14 13 35 35 H 0.97005 * 119.99843 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.07272 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.92553 * 180.27917 * 23 22 21 38 38 H 1.07998 * 119.85106 * 179.69371 * 24 23 22 39 39 H 1.07998 * 119.92771 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.08021 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2684 -0.7270 6 7 2.0433 3.4890 -0.4174 7 14 0.4840 1.9867 -2.1446 8 1 -0.9113 2.1586 -1.6662 9 1 0.7617 2.9683 -3.2237 10 1 0.6608 0.6094 -2.6708 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 6 2.3647 -3.6177 -0.0027 15 6 2.3439 -4.5852 0.9162 16 16 3.6452 -5.7147 0.5498 17 6 4.0922 -4.7755 -0.8070 18 7 5.1399 -5.0720 -1.6695 19 6 5.8906 -6.1723 -1.4647 20 8 5.6512 -6.9052 -0.5249 21 6 7.0049 -6.4880 -2.3829 22 6 7.2789 -5.6516 -3.4665 23 6 8.3242 -5.9490 -4.3163 24 6 9.0930 -7.0795 -4.1031 25 6 8.8231 -7.9158 -3.0344 26 6 7.7847 -7.6269 -2.1734 27 7 3.3117 -3.7458 -0.9131 28 1 -0.3633 -0.0872 1.0239 29 1 -0.3634 0.9304 -0.4364 30 1 -0.3633 -0.8432 -0.5875 31 1 1.7058 4.2437 -0.9247 32 1 0.7590 -2.5294 -0.8919 33 1 0.7584 -2.5307 0.8880 34 1 1.6499 -4.6627 1.7401 35 1 5.3311 -4.4870 -2.4193 36 1 6.6765 -4.7715 -3.6368 37 1 8.5401 -5.3004 -5.1524 38 1 9.9070 -7.3104 -4.7742 39 1 9.4268 -8.7969 -2.8739 40 1 7.5748 -8.2806 -1.3399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354135822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:30 Heat of formation + Delta-G solvation = 8.690016 kcal Electronic energy + Delta-G solvation = -26173.122296 eV Core-core repulsion = 22273.050504 eV Total energy + Delta-G solvation = -3900.071792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91559 -41.07294 -39.97085 -39.37648 -36.70722 -36.27203 -34.16230 -32.95741 -32.02324 -31.84243 -29.40105 -28.01357 -26.69020 -26.17575 -24.35446 -23.42813 -22.45738 -21.58606 -20.49857 -19.13364 -19.00603 -18.83668 -17.99510 -17.61611 -17.34737 -17.16933 -16.85228 -16.45135 -16.08812 -15.73847 -15.61890 -15.17520 -14.97677 -14.80882 -14.57238 -14.38642 -14.22270 -14.07438 -13.88704 -13.66884 -13.41248 -13.08241 -12.88815 -12.61483 -12.38959 -12.20468 -12.10005 -11.99656 -11.80974 -11.24342 -11.03777 -10.69692 -10.34703 -10.15726 -10.10372 -10.02060 -9.65981 -9.25568 -8.50300 -6.12137 -0.52358 -0.05279 0.14830 0.35185 0.85271 1.20159 1.33790 1.39220 1.45009 1.46665 1.95593 2.02017 2.19104 2.78853 2.84737 2.98188 3.28269 3.47712 3.81189 3.93323 4.08301 4.14799 4.20851 4.36200 4.38929 4.39490 4.43603 4.55535 4.64077 4.66228 4.77961 4.79391 4.86894 5.00334 5.14945 5.21470 5.37043 5.45372 5.55637 5.77580 5.87763 6.03800 6.53439 6.60008 6.85355 6.98015 7.32997 7.93887 8.67659 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.002568 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.969636 B =10901.452009 C =12280.822591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.490 5.490 3 C -0.332 4.332 4 H 0.037 0.963 5 C 0.006 3.994 6 N -0.916 5.916 7 Si 0.958 3.042 8 H -0.236 1.236 9 H -0.293 1.293 10 H -0.260 1.260 11 C 0.463 3.537 12 O -0.603 6.603 13 C -0.054 4.054 14 C 0.090 3.910 15 C -0.298 4.298 16 S 0.243 5.757 17 C 0.218 3.782 18 N -0.616 5.616 19 C 0.559 3.441 20 O -0.529 6.529 21 C -0.155 4.155 22 C -0.090 4.090 23 C -0.129 4.129 24 C -0.081 4.081 25 C -0.127 4.127 26 C -0.065 4.065 27 N -0.512 5.512 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.279 0.721 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.211 0.789 35 H 0.428 0.572 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -25.839 -7.612 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.214 5.214 3 C -0.460 4.460 4 H 0.055 0.945 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.781 3.219 8 H -0.160 1.160 9 H -0.220 1.220 10 H -0.184 1.184 11 C 0.252 3.748 12 O -0.486 6.486 13 C -0.096 4.096 14 C -0.042 4.042 15 C -0.438 4.438 16 S 0.493 5.507 17 C -0.149 4.149 18 N -0.266 5.266 19 C 0.349 3.651 20 O -0.407 6.407 21 C -0.158 4.158 22 C -0.109 4.109 23 C -0.147 4.147 24 C -0.099 4.099 25 C -0.145 4.145 26 C -0.084 4.084 27 N -0.235 5.235 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.228 0.772 35 H 0.269 0.731 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.713 -26.727 -7.004 28.214 hybrid contribution -0.564 2.052 -0.765 2.261 sum 5.149 -24.675 -7.769 26.377 Atomic orbital electron populations 1.22274 0.79900 1.02796 1.03625 1.43831 1.06142 1.04375 1.67008 1.18609 1.09212 0.88122 1.30031 0.94452 1.26224 1.00117 0.93835 0.99374 1.69881 1.46404 0.99246 1.39872 0.85708 0.79347 0.78681 0.78137 1.16028 1.22011 1.18363 1.21071 0.88058 0.85939 0.79726 1.90545 1.16555 1.87769 1.53769 1.20340 0.95700 0.86506 1.07044 1.19428 0.95515 0.97291 0.92008 1.27549 1.08028 1.01167 1.07051 1.84404 1.23319 1.23197 1.19804 1.23594 0.96061 0.96727 0.98549 1.42728 1.27802 1.26823 1.29211 1.19027 0.82042 0.78811 0.85192 1.90679 1.69612 1.48829 1.31578 1.19513 0.97931 1.00340 0.97999 1.21586 0.97921 0.98224 0.93169 1.21501 0.94732 0.98429 1.00009 1.21896 0.98530 0.92866 0.96599 1.21522 0.97142 1.01242 0.94608 1.21434 0.93533 0.94335 0.99121 1.66007 1.07221 1.19210 1.31017 0.90217 0.92821 0.88329 0.91116 0.86068 0.84128 0.77207 0.73098 0.84768 0.82754 0.82162 0.82367 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 8.78 127.77 1.12 3.13 16 2 N -0.49 -24.24 2.59 -658.89 -1.70 -25.94 16 3 C -0.33 -20.19 9.37 84.04 0.79 -19.40 16 4 H 0.04 2.69 7.90 -2.91 -0.02 2.66 16 5 C 0.01 0.33 5.29 84.93 0.45 0.78 16 6 N -0.92 -56.01 13.96 21.66 0.30 -55.71 16 7 Si 0.96 42.79 24.96 68.60 1.71 44.50 16 8 H -0.24 -8.99 6.69 99.48 0.67 -8.32 16 9 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 C 0.46 22.32 7.59 87.66 0.67 22.98 16 12 O -0.60 -35.65 15.31 -3.07 -0.05 -35.70 16 13 C -0.05 -1.79 4.81 29.10 0.14 -1.65 16 14 C 0.09 3.15 5.63 41.45 0.23 3.39 16 15 C -0.30 -8.40 11.05 66.73 0.74 -7.66 16 16 S 0.24 7.06 20.21 -56.49 -1.14 5.91 16 17 C 0.22 7.39 8.19 179.23 1.47 8.86 16 18 N -0.62 -17.30 5.35 -316.36 -1.69 -18.99 16 19 C 0.56 14.58 7.73 86.77 0.67 15.25 16 20 O -0.53 -15.80 13.81 -3.88 -0.05 -15.86 16 21 C -0.15 -3.09 5.87 -20.09 -0.12 -3.20 16 22 C -0.09 -1.43 9.54 22.53 0.21 -1.22 16 23 C -0.13 -1.46 10.03 22.23 0.22 -1.24 16 24 C -0.08 -0.73 10.04 22.33 0.22 -0.51 16 25 C -0.13 -1.38 10.03 22.23 0.22 -1.15 16 26 C -0.07 -1.09 9.60 22.53 0.22 -0.87 16 27 N -0.51 -20.06 9.73 -189.66 -1.85 -21.91 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.05 3.42 -2.39 -0.01 2.04 16 30 H 0.10 2.65 6.64 -2.39 -0.02 2.64 16 31 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.12 3.42 7.41 -2.39 -0.02 3.41 16 33 H 0.14 3.41 7.99 -2.39 -0.02 3.39 16 34 H 0.21 4.14 8.06 -2.90 -0.02 4.12 16 35 H 0.43 10.45 6.85 -92.70 -0.64 9.81 16 36 H 0.13 1.88 6.41 -2.91 -0.02 1.86 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.14 2.26 7.65 -2.91 -0.02 2.24 16 Total: -1.00 -89.19 353.35 3.22 -85.96 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.44 Total: 20.24 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 7.26 Total: 17.49 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -4.94 Total: -122.55 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.10 Total: -51.55 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.71 Total: 44.50 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.14 Total: 5.91 kcal Total: -89.19 3.22 -85.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354135822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.655 kcal (2) G-P(sol) polarization free energy of solvation -89.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds