Wall clock time and date at job start Wed Apr 1 2020 02:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46755 * 124.34887 * 2 1 4 4 C 1.54483 * 105.47112 * 196.99688 * 3 2 1 5 5 H 1.08994 * 110.97290 * 92.73881 * 4 3 2 6 6 C 1.50706 * 110.96904 * 216.46320 * 4 3 2 7 7 N 1.30038 * 126.18432 * 59.97499 * 6 4 3 8 8 O 1.21286 * 110.48244 * 179.97438 * 7 6 4 9 9 C 1.34192 * 109.69557 * 0.02562 * 8 7 6 10 10 C 1.47831 * 126.67978 * 179.97438 * 9 8 7 11 11 C 1.39674 * 120.10373 * 180.02562 * 10 9 8 12 12 C 1.38041 * 120.03658 * 179.97438 * 11 10 9 13 13 C 1.38177 * 120.24590 * 359.67487 * 12 11 10 14 14 C 1.39186 * 120.19886 * 0.60021 * 13 12 11 15 15 S 1.76203 * 120.01983 * 179.69329 * 14 13 12 16 16 C 1.76200 * 100.00285 * 274.26956 * 15 14 13 17 17 H 1.08004 * 119.99376 * 354.88821 * 16 15 14 18 18 C 1.38714 * 120.00103 * 174.88850 * 16 15 14 19 19 N 1.31625 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47308 * 59.99505 * 20 18 16 22 22 H 1.48502 * 109.47217 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46694 * 299.99409 * 20 18 16 24 24 C 1.38871 * 119.95919 * 359.42301 * 14 13 12 25 25 N 1.32118 * 106.65082 * 0.22198 * 9 8 7 26 26 C 1.54626 * 101.76482 * 334.58263 * 4 3 2 27 27 C 1.34419 * 124.34699 * 179.97438 * 2 1 3 28 28 O 1.21286 * 124.94397 * 359.61864 * 27 2 1 29 29 H 1.09000 * 109.47390 * 89.99700 * 1 2 3 30 30 H 1.08997 * 109.47370 * 210.00606 * 1 2 3 31 31 H 1.09004 * 109.47201 * 329.99933 * 1 2 3 32 32 H 1.09003 * 110.25133 * 77.99534 * 3 2 1 33 33 H 1.08998 * 110.25036 * 315.99451 * 3 2 1 34 34 H 1.08001 * 119.98178 * 359.97438 * 11 10 9 35 35 H 1.08008 * 119.87777 * 179.97438 * 12 11 10 36 36 H 1.07994 * 119.90624 * 180.31887 * 13 12 11 37 37 H 0.97000 * 120.00120 * 0.02562 * 19 18 16 38 38 H 1.07998 * 120.12353 * 180.29235 * 24 14 13 39 39 H 1.08997 * 110.48926 * 143.47642 * 26 4 3 40 40 H 1.09002 * 110.48439 * 266.12058 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7011 0.7485 -0.4352 5 1 3.8275 0.8449 -1.5135 6 6 4.7716 1.5123 0.3009 7 7 4.9437 1.5441 1.5894 8 8 5.8901 2.2472 1.8740 9 6 6.4324 2.7505 0.7545 10 6 7.6000 3.6530 0.6673 11 6 8.0510 4.0968 -0.5779 12 6 9.1411 4.9399 -0.6576 13 6 9.7864 5.3538 0.4920 14 6 9.3490 4.9132 1.7377 15 16 10.1804 5.4375 3.2001 16 6 11.4643 4.2329 3.2709 17 1 11.4820 3.4202 2.5596 18 6 12.4522 4.3282 4.2400 19 7 12.4308 5.3188 5.1064 20 14 13.8137 3.0514 4.3146 21 1 14.5658 3.0543 3.0342 22 1 14.7370 3.3770 5.4312 23 1 13.2209 1.7082 4.5375 24 6 8.2535 4.0645 1.8277 25 7 5.7164 2.2869 -0.2545 26 6 3.6897 -0.7379 -0.0093 27 6 2.2234 -1.1098 0.0005 28 8 1.7945 -2.2443 0.0076 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 2.3303 1.6432 1.0003 33 1 1.8986 1.9381 -0.7104 34 1 7.5466 3.7801 -1.4788 35 1 9.4879 5.2812 -1.6219 36 1 10.6355 6.0176 0.4235 37 1 11.7240 5.9820 5.0674 38 1 7.9089 3.7248 2.7932 39 1 4.2327 -1.3462 -0.7326 40 1 4.1191 -0.8528 0.9860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356946000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:09 Heat of formation + Delta-G solvation = 60.497814 kcal Electronic energy + Delta-G solvation = -25794.304162 eV Core-core repulsion = 21896.478925 eV Total energy + Delta-G solvation = -3897.825237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.69820 -40.85980 -38.90220 -37.28524 -35.90701 -34.06410 -32.71639 -32.52859 -30.85213 -30.20626 -28.27419 -27.38204 -25.05847 -24.72362 -24.47255 -22.73047 -22.21541 -20.66198 -20.09075 -18.61253 -18.19730 -18.14367 -17.35144 -16.95422 -16.48080 -15.91199 -15.73933 -14.96243 -14.68135 -14.55438 -14.29318 -14.03495 -13.93967 -13.72466 -13.40468 -13.23824 -12.96677 -12.82628 -12.76268 -12.72749 -12.63484 -12.45254 -11.79584 -11.66683 -11.52800 -11.30595 -11.14998 -11.01867 -10.59693 -10.25920 -10.21753 -9.75255 -9.26789 -9.23593 -9.19301 -8.69026 -8.11838 -7.00406 -6.76478 -4.20084 0.39831 1.38006 1.48345 2.12918 2.19651 2.50392 2.56049 2.97508 3.14452 3.29745 3.31631 3.50826 3.61992 3.77859 3.89830 4.02116 4.18412 4.29681 4.35879 4.76211 4.83004 4.89244 4.93169 4.98455 5.08242 5.10732 5.11665 5.18695 5.23823 5.27369 5.31355 5.41280 5.52543 5.55930 5.69516 5.77856 5.95439 5.99202 6.31260 6.44305 6.56426 6.63928 6.88321 7.69653 7.84049 7.93105 8.34392 9.08853 10.66121 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.002117 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.814185 B =13223.934187 C =13913.513071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.623 5.623 3 C 0.113 3.887 4 C -0.006 4.006 5 H 0.125 0.875 6 C 0.177 3.823 7 N -0.381 5.381 8 O 0.088 5.912 9 C 0.254 3.746 10 C -0.058 4.058 11 C -0.059 4.059 12 C -0.136 4.136 13 C -0.046 4.046 14 C -0.087 4.087 15 S -0.084 6.084 16 C -0.594 4.594 17 H 0.070 0.930 18 C 0.037 3.963 19 N -0.882 5.882 20 Si 1.083 2.917 21 H -0.284 1.284 22 H -0.277 1.277 23 H -0.283 1.283 24 C -0.036 4.036 25 N -0.480 5.480 26 C -0.148 4.148 27 C 0.523 3.477 28 O -0.527 6.527 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.276 0.724 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.015 -4.276 -13.545 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.358 5.358 3 C -0.011 4.011 4 C -0.027 4.027 5 H 0.144 0.856 6 C -0.097 4.097 7 N -0.088 5.088 8 O 0.029 5.971 9 C 0.038 3.962 10 C -0.062 4.062 11 C -0.079 4.079 12 C -0.155 4.155 13 C -0.068 4.068 14 C -0.198 4.198 15 S 0.150 5.850 16 C -0.741 4.741 17 H 0.088 0.912 18 C -0.173 4.173 19 N -0.516 5.516 20 Si 0.908 3.092 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.210 1.210 24 C -0.058 4.058 25 N -0.213 5.213 26 C -0.189 4.189 27 C 0.311 3.689 28 O -0.403 6.403 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.157 0.843 39 H 0.131 0.869 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.848 -4.913 -11.793 21.950 hybrid contribution -0.931 -0.465 -1.705 1.997 sum -18.779 -5.378 -13.498 23.744 Atomic orbital electron populations 1.21583 0.77420 1.03442 1.02138 1.48146 1.06780 1.06980 1.73924 1.22126 0.88450 0.87551 1.02965 1.20308 0.89177 0.92614 1.00554 0.85648 1.25046 0.98127 0.98892 0.87618 1.74579 1.04617 1.12655 1.16928 1.85446 1.31867 1.45249 1.34580 1.26448 0.95291 0.94482 0.79935 1.17260 0.93122 1.00287 0.95560 1.21129 0.95625 0.95387 0.95780 1.21125 0.96351 0.99207 0.98864 1.22074 0.97471 0.95884 0.91374 1.22337 0.98053 0.99446 0.99935 1.83163 1.34306 1.43620 1.23891 1.23695 1.13401 1.13331 1.23693 0.91179 1.26090 0.99326 1.00260 0.91630 1.70846 1.34466 1.12056 1.34207 0.83333 0.74867 0.74256 0.76715 1.20981 1.20178 1.20950 1.21878 0.93430 0.93300 0.97236 1.72087 1.06681 1.13680 1.28882 1.22481 0.95455 0.94981 1.05953 1.20714 0.88799 0.84376 0.75054 1.90746 1.78429 1.20938 1.50158 0.92249 0.90417 0.90791 0.90194 0.89096 0.84795 0.85045 0.84691 0.91184 0.84289 0.86851 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 10.96 59.85 0.66 1.24 16 2 N -0.62 -5.19 3.33 -180.29 -0.60 -5.80 16 3 C 0.11 0.80 6.90 -3.12 -0.02 0.78 16 4 C -0.01 -0.05 3.69 -90.14 -0.33 -0.38 16 5 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 6 C 0.18 2.03 6.75 -156.55 -1.06 0.98 16 7 N -0.38 -5.05 11.73 31.19 0.37 -4.68 16 8 O 0.09 1.27 11.13 16.67 0.19 1.45 16 9 C 0.25 3.55 8.01 -13.84 -0.11 3.44 16 10 C -0.06 -0.85 5.87 -105.01 -0.62 -1.46 16 11 C -0.06 -0.76 9.70 -39.12 -0.38 -1.14 16 12 C -0.14 -1.76 10.02 -39.68 -0.40 -2.16 16 13 C -0.05 -0.76 9.79 -39.25 -0.38 -1.14 16 14 C -0.09 -1.66 5.45 -39.00 -0.21 -1.87 16 15 S -0.08 -1.99 20.43 -107.50 -2.20 -4.19 16 16 C -0.59 -15.96 9.46 30.91 0.29 -15.67 16 17 H 0.07 1.88 7.79 -52.48 -0.41 1.47 16 18 C 0.04 1.02 5.49 -17.46 -0.10 0.93 16 19 N -0.88 -25.57 13.67 55.49 0.76 -24.81 16 20 Si 1.08 23.86 29.92 -169.99 -5.09 18.77 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.04 -0.61 9.48 -38.92 -0.37 -0.97 16 25 N -0.48 -6.18 11.25 -10.16 -0.11 -6.30 16 26 C -0.15 -1.31 6.41 -26.74 -0.17 -1.48 16 27 C 0.52 5.63 8.02 -10.86 -0.09 5.54 16 28 O -0.53 -7.62 17.59 5.55 0.10 -7.53 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.63 7.80 -51.93 -0.40 0.23 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 1.47 7.87 -52.49 -0.41 1.05 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.28 8.01 7.12 -40.82 -0.29 7.72 16 38 H 0.14 2.34 7.94 -52.49 -0.42 1.92 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.12 7.64 -51.93 -0.40 0.72 16 LS Contribution 367.29 15.07 5.54 5.54 Total: -1.00 -32.42 367.29 -8.84 -41.26 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.50 Total: -0.34 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.29 Total: -13.38 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.41 Total: -41.59 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.28 Total: -6.07 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.09 Total: 18.77 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.20 Total: -4.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.42 -8.84 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356946000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.755 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds