Wall clock time and date at job start Wed Apr 1 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46755 * 124.34887 * 2 1 4 4 C 1.54483 * 105.47112 * 196.99688 * 3 2 1 5 5 H 1.08994 * 110.97290 * 92.73881 * 4 3 2 6 6 C 1.50706 * 110.96904 * 216.46320 * 4 3 2 7 7 N 1.30038 * 126.18432 * 59.97499 * 6 4 3 8 8 O 1.21286 * 110.48244 * 179.97438 * 7 6 4 9 9 C 1.34192 * 109.69557 * 0.02562 * 8 7 6 10 10 C 1.47831 * 126.67978 * 179.97438 * 9 8 7 11 11 C 1.39674 * 120.10373 * 180.02562 * 10 9 8 12 12 C 1.38041 * 120.03658 * 179.97438 * 11 10 9 13 13 C 1.38177 * 120.24590 * 359.67487 * 12 11 10 14 14 C 1.39186 * 120.19886 * 0.60021 * 13 12 11 15 15 S 1.76203 * 120.01983 * 179.69329 * 14 13 12 16 16 C 1.76200 * 100.00285 * 274.26956 * 15 14 13 17 17 H 1.08004 * 119.99376 * 354.88821 * 16 15 14 18 18 C 1.38714 * 120.00103 * 174.88850 * 16 15 14 19 19 N 1.31625 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47308 * 59.99505 * 20 18 16 22 22 H 1.48502 * 109.47217 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46694 * 299.99409 * 20 18 16 24 24 C 1.38871 * 119.95919 * 359.42301 * 14 13 12 25 25 N 1.32118 * 106.65082 * 0.22198 * 9 8 7 26 26 C 1.54626 * 101.76482 * 334.58263 * 4 3 2 27 27 C 1.34419 * 124.34699 * 179.97438 * 2 1 3 28 28 O 1.21286 * 124.94397 * 359.61864 * 27 2 1 29 29 H 1.09000 * 109.47390 * 89.99700 * 1 2 3 30 30 H 1.08997 * 109.47370 * 210.00606 * 1 2 3 31 31 H 1.09004 * 109.47201 * 329.99933 * 1 2 3 32 32 H 1.09003 * 110.25133 * 77.99534 * 3 2 1 33 33 H 1.08998 * 110.25036 * 315.99451 * 3 2 1 34 34 H 1.08001 * 119.98178 * 359.97438 * 11 10 9 35 35 H 1.08008 * 119.87777 * 179.97438 * 12 11 10 36 36 H 1.07994 * 119.90624 * 180.31887 * 13 12 11 37 37 H 0.97000 * 120.00120 * 0.02562 * 19 18 16 38 38 H 1.07998 * 120.12353 * 180.29235 * 24 14 13 39 39 H 1.08997 * 110.48926 * 143.47642 * 26 4 3 40 40 H 1.09002 * 110.48439 * 266.12058 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7011 0.7485 -0.4352 5 1 3.8275 0.8449 -1.5135 6 6 4.7716 1.5123 0.3009 7 7 4.9437 1.5441 1.5894 8 8 5.8901 2.2472 1.8740 9 6 6.4324 2.7505 0.7545 10 6 7.6000 3.6530 0.6673 11 6 8.0510 4.0968 -0.5779 12 6 9.1411 4.9399 -0.6576 13 6 9.7864 5.3538 0.4920 14 6 9.3490 4.9132 1.7377 15 16 10.1804 5.4375 3.2001 16 6 11.4643 4.2329 3.2709 17 1 11.4820 3.4202 2.5596 18 6 12.4522 4.3282 4.2400 19 7 12.4308 5.3188 5.1064 20 14 13.8137 3.0514 4.3146 21 1 14.5658 3.0543 3.0342 22 1 14.7370 3.3770 5.4312 23 1 13.2209 1.7082 4.5375 24 6 8.2535 4.0645 1.8277 25 7 5.7164 2.2869 -0.2545 26 6 3.6897 -0.7379 -0.0093 27 6 2.2234 -1.1098 0.0005 28 8 1.7945 -2.2443 0.0076 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 2.3303 1.6432 1.0003 33 1 1.8986 1.9381 -0.7104 34 1 7.5466 3.7801 -1.4788 35 1 9.4879 5.2812 -1.6219 36 1 10.6355 6.0176 0.4235 37 1 11.7240 5.9820 5.0674 38 1 7.9089 3.7248 2.7932 39 1 4.2327 -1.3462 -0.7326 40 1 4.1191 -0.8528 0.9860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356946000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:08 Heat of formation + Delta-G solvation = 39.763925 kcal Electronic energy + Delta-G solvation = -25795.203251 eV Core-core repulsion = 21896.478925 eV Total energy + Delta-G solvation = -3898.724326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.71742 -41.60446 -40.11709 -38.16284 -36.85362 -34.97310 -34.79340 -33.41081 -32.07946 -31.32285 -28.99725 -27.97834 -27.13927 -25.82039 -25.35880 -23.75111 -23.41642 -21.61328 -20.83240 -20.47786 -19.34138 -19.18670 -18.33507 -17.76855 -17.39371 -17.04212 -16.59842 -16.25098 -16.01351 -15.73311 -15.32452 -15.02175 -14.91500 -14.78621 -14.75517 -14.53818 -14.19493 -13.97773 -13.80480 -13.55834 -13.40842 -13.27300 -12.95398 -12.80582 -12.57936 -12.54841 -12.47405 -12.15988 -11.97337 -11.64080 -11.46477 -11.15250 -11.10205 -10.83289 -9.90988 -9.89439 -9.67421 -8.97977 -8.90496 -6.29668 -0.73582 0.11561 0.44701 1.10704 1.34691 1.38250 1.49559 1.54480 1.58508 1.79499 1.85692 2.22850 2.29945 2.61869 2.72415 3.00658 3.22742 3.23874 3.28080 3.45697 3.71085 3.84796 3.91901 4.02632 4.24535 4.26871 4.30800 4.35255 4.41053 4.45627 4.57312 4.59168 4.62591 4.67189 4.80609 4.82027 4.83104 5.14948 5.27328 5.34710 5.38349 5.67169 5.71776 5.86434 6.17001 6.89660 6.92639 7.01985 8.51353 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.002117 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.814185 B =13223.934187 C =13913.513071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.116 3.884 4 C -0.001 4.001 5 H 0.153 0.847 6 C 0.190 3.810 7 N -0.395 5.395 8 O 0.068 5.932 9 C 0.247 3.753 10 C -0.053 4.053 11 C -0.041 4.041 12 C -0.115 4.115 13 C -0.056 4.056 14 C -0.111 4.111 15 S -0.131 6.131 16 C -0.602 4.602 17 H 0.063 0.937 18 C -0.012 4.012 19 N -0.910 5.910 20 Si 1.128 2.872 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.047 4.047 25 N -0.473 5.473 26 C -0.143 4.143 27 C 0.516 3.484 28 O -0.573 6.573 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.133 0.867 37 H 0.264 0.736 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.030 -4.703 -16.972 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.352 5.352 3 C -0.008 4.008 4 C -0.021 4.021 5 H 0.170 0.830 6 C -0.084 4.084 7 N -0.105 5.105 8 O 0.012 5.988 9 C 0.031 3.969 10 C -0.058 4.058 11 C -0.061 4.061 12 C -0.134 4.134 13 C -0.077 4.077 14 C -0.223 4.223 15 S 0.104 5.896 16 C -0.749 4.749 17 H 0.081 0.919 18 C -0.216 4.216 19 N -0.545 5.545 20 Si 0.946 3.054 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.070 4.070 25 N -0.206 5.206 26 C -0.184 4.184 27 C 0.305 3.695 28 O -0.453 6.453 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.184 0.816 35 H 0.194 0.806 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.881 -5.284 -15.223 24.822 hybrid contribution -0.830 -0.343 -0.769 1.182 sum -19.711 -5.626 -15.992 25.998 Atomic orbital electron populations 1.21780 0.76119 1.03939 1.03312 1.48293 1.07753 1.06732 1.72374 1.22223 0.87677 0.87362 1.03496 1.20511 0.88716 0.91367 1.01549 0.82972 1.25574 0.97896 0.97823 0.87120 1.74609 1.04733 1.13136 1.18068 1.85449 1.32420 1.45773 1.35109 1.26379 0.95460 0.94801 0.80288 1.17283 0.93053 1.00064 0.95370 1.21546 0.94867 0.93702 0.95940 1.21505 0.95118 0.97582 0.99239 1.22116 0.98000 0.96229 0.91383 1.22062 0.99271 1.02343 0.98597 1.83099 1.34364 1.43630 1.28522 1.23954 1.13970 1.13822 1.23127 0.91866 1.27587 1.01662 1.01272 0.91097 1.70942 1.34713 1.13115 1.35750 0.82799 0.72569 0.72465 0.77522 1.18866 1.20206 1.19541 1.21688 0.93542 0.93752 0.98006 1.72091 1.06601 1.13597 1.28318 1.22436 0.94450 0.95817 1.05722 1.20993 0.89707 0.84221 0.74611 1.90719 1.79252 1.22746 1.52571 0.90725 0.91833 0.88429 0.90972 0.85904 0.81556 0.80626 0.84884 0.92510 0.85534 0.85515 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.96 127.77 1.40 2.31 16 2 N -0.62 -8.97 3.33 -842.90 -2.81 -11.78 16 3 C 0.12 1.27 6.90 86.83 0.60 1.87 16 4 C 0.00 -0.02 3.69 -10.48 -0.04 -0.06 16 5 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 6 C 0.19 3.89 6.75 138.53 0.93 4.82 16 7 N -0.40 -10.05 11.73 -58.64 -0.69 -10.74 16 8 O 0.07 1.93 11.13 69.73 0.78 2.70 16 9 C 0.25 6.47 8.01 87.31 0.70 7.17 16 10 C -0.05 -1.47 5.87 -20.12 -0.12 -1.58 16 11 C -0.04 -0.90 9.70 22.57 0.22 -0.68 16 12 C -0.12 -2.54 10.02 22.21 0.22 -2.32 16 13 C -0.06 -1.76 9.79 22.48 0.22 -1.54 16 14 C -0.11 -4.32 5.45 22.65 0.12 -4.20 16 15 S -0.13 -6.49 20.43 -56.49 -1.15 -7.65 16 16 C -0.60 -33.29 9.46 67.93 0.64 -32.65 16 17 H 0.06 3.46 7.79 -2.91 -0.02 3.44 16 18 C -0.01 -0.68 5.49 84.84 0.47 -0.21 16 19 N -0.91 -54.51 13.67 21.63 0.30 -54.21 16 20 Si 1.13 48.24 29.92 68.60 2.05 50.29 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C -0.05 -1.62 9.48 22.70 0.22 -1.41 16 25 N -0.47 -10.69 11.25 -302.75 -3.41 -14.09 16 26 C -0.14 -2.30 6.41 30.59 0.20 -2.11 16 27 C 0.52 10.55 8.02 87.90 0.71 11.25 16 28 O -0.57 -16.61 17.59 -3.05 -0.05 -16.67 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.85 7.92 -2.39 -0.02 0.83 16 31 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.96 7.80 -2.39 -0.02 0.94 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.17 2.67 7.87 -2.91 -0.02 2.65 16 35 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.26 16.06 7.12 -92.71 -0.66 15.40 16 38 H 0.13 4.53 7.94 -2.91 -0.02 4.50 16 39 H 0.13 1.67 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.91 7.64 -2.39 -0.02 1.89 16 Total: -1.00 -74.24 367.29 2.69 -71.55 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.19 Total: 9.93 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 6.49 Total: -19.33 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -6.61 Total: -90.83 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.72 Total: -13.96 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.05 Total: 50.29 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -1.15 Total: -7.65 kcal Total: -74.24 2.69 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356946000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.309 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds