Wall clock time and date at job start Wed Apr 1 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38361 * 127.15624 * 2 1 4 4 C 1.39771 * 126.55905 * 0.02562 * 3 2 1 5 5 H 1.07996 * 120.00583 * 0.30492 * 4 3 2 6 6 C 1.40082 * 119.99820 * 180.30358 * 4 3 2 7 7 N 1.30820 * 119.99938 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47379 * 90.00173 * 8 6 4 10 10 H 1.48503 * 109.47433 * 210.00530 * 8 6 4 11 11 H 1.48501 * 109.47081 * 330.00211 * 8 6 4 12 12 N 1.33096 * 106.87125 * 180.29229 * 3 2 1 13 13 N 1.28518 * 109.74945 * 359.74864 * 12 3 2 14 14 C 1.32394 * 110.19873 * 359.97438 * 13 12 3 15 15 S 1.76197 * 126.25409 * 180.02562 * 14 13 12 16 16 C 1.80997 * 100.00256 * 0.03121 * 15 14 13 17 17 C 1.50705 * 109.47509 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99399 * 359.97438 * 17 16 15 19 19 C 1.46856 * 120.00232 * 180.02562 * 17 16 15 20 20 C 1.40033 * 120.29543 * 359.97438 * 19 17 16 21 21 C 1.36377 * 120.30860 * 180.25399 * 20 19 17 22 22 C 1.39657 * 120.58661 * 0.27793 * 21 20 19 23 23 C 1.39297 * 119.12684 * 359.06911 * 22 21 20 24 24 C 1.37214 * 120.86350 * 1.09573 * 23 22 21 25 25 C 1.51654 * 107.00651 * 181.09164 * 23 22 21 26 26 C 1.54709 * 101.90061 * 15.52125 * 25 23 22 27 27 O 1.35947 * 129.73547 * 179.35499 * 22 21 20 28 28 H 1.08999 * 109.46533 * 270.15639 * 1 2 3 29 29 H 1.09005 * 109.46841 * 30.15522 * 1 2 3 30 30 H 1.08997 * 109.46839 * 150.15526 * 1 2 3 31 31 H 0.97002 * 120.00306 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47540 * 59.99710 * 16 15 14 33 33 H 1.09000 * 109.46984 * 299.99771 * 16 15 14 34 34 H 1.07998 * 119.84986 * 0.22821 * 20 19 17 35 35 H 1.08002 * 119.70459 * 179.97438 * 21 20 19 36 36 H 1.08006 * 120.15132 * 179.38414 * 24 23 22 37 37 H 1.08994 * 110.94749 * 133.66872 * 25 23 22 38 38 H 1.09002 * 110.94858 * 257.33628 * 25 23 22 39 39 H 1.09004 * 110.74370 * 93.01947 * 26 25 23 40 40 H 1.09007 * 110.73842 * 216.16823 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3007 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8596 2.7005 0.0059 6 6 2.8768 3.4568 -0.0060 7 7 4.1477 3.1466 -0.0130 8 14 2.3532 5.2499 -0.0061 9 1 2.2216 5.7272 1.3939 10 1 3.3746 6.0639 -0.7127 11 1 1.0469 5.3841 -0.6996 12 7 3.5491 0.6413 -0.0065 13 7 3.5371 -0.6438 -0.0051 14 6 2.2904 -1.0893 0.0029 15 16 1.7873 -2.7779 0.0083 16 6 3.4058 -3.5882 0.0009 17 6 3.2190 -5.0836 0.0037 18 8 2.1015 -5.5551 0.0105 19 6 4.3900 -5.9699 -0.0007 20 6 5.6829 -5.4321 -0.0080 21 6 6.7705 -6.2548 -0.0174 22 6 6.6119 -7.6423 -0.0256 23 6 5.3262 -8.1779 -0.0043 24 6 4.2235 -7.3613 0.0018 25 6 5.4745 -9.6871 0.0080 26 6 6.9623 -9.8583 0.3960 27 8 7.5517 -8.6244 -0.0471 28 1 -0.3632 0.0028 1.0277 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8914 -0.5114 31 1 4.8181 3.8476 -0.0172 32 1 3.9655 -3.2899 0.8873 33 1 3.9559 -3.2928 -0.8925 34 1 5.8195 -4.3608 -0.0067 35 1 7.7633 -5.8296 -0.0234 36 1 3.2317 -7.7890 0.0082 37 1 4.8224 -10.1367 0.7568 38 1 5.2780 -10.1061 -0.9789 39 1 7.0693 -9.9718 1.4748 40 1 7.4019 -10.7086 -0.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357104410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:16 Heat of formation + Delta-G solvation = 32.947629 kcal Electronic energy + Delta-G solvation = -25688.104900 eV Core-core repulsion = 21789.084997 eV Total energy + Delta-G solvation = -3899.019903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51163 -40.51418 -39.56888 -37.28256 -33.70979 -33.33488 -33.21868 -31.41823 -30.08930 -29.38324 -28.88336 -26.48995 -25.54290 -24.16171 -23.37809 -22.15686 -20.90007 -20.64485 -19.74054 -17.80377 -17.42668 -17.13228 -16.80049 -16.54842 -16.06188 -15.41884 -15.29962 -14.84260 -14.65972 -14.46289 -14.36934 -13.79079 -13.54313 -13.44192 -13.35148 -13.14353 -13.01242 -12.68065 -12.52356 -12.24531 -12.21330 -12.17052 -11.39743 -11.31111 -11.23483 -11.11812 -10.94442 -10.41141 -10.25800 -9.94325 -9.72695 -9.63379 -9.31146 -8.71690 -8.52783 -8.42620 -8.40312 -6.83928 -6.66277 -4.58425 0.41296 1.02686 1.87776 2.19209 2.76250 2.82688 2.90769 3.05856 3.09224 3.34573 3.45817 3.80396 3.86673 4.02781 4.22942 4.24802 4.40408 4.46381 4.55490 4.76334 4.88616 4.98020 5.11400 5.23993 5.29599 5.30750 5.31860 5.32609 5.56665 5.66994 5.71065 5.88407 5.90046 5.97312 6.05225 6.06029 6.17230 6.74672 6.74922 6.87972 7.22962 7.38988 7.47951 7.87469 8.16713 8.69022 8.84764 10.26264 10.61341 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002068 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.132893 B =13533.938553 C =14662.658244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.347 3.653 4 C -0.446 4.446 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.737 5.737 8 Si 0.921 3.079 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.262 1.262 12 N -0.333 5.333 13 N -0.288 5.288 14 C 0.035 3.965 15 S -0.002 6.002 16 C -0.155 4.155 17 C 0.420 3.580 18 O -0.443 6.443 19 C -0.191 4.191 20 C -0.030 4.030 21 C -0.148 4.148 22 C 0.138 3.862 23 C -0.195 4.195 24 C -0.007 4.007 25 C -0.109 4.109 26 C 0.050 3.950 27 O -0.301 6.301 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.279 0.721 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -20.738 0.559 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.216 5.216 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.361 5.361 8 Si 0.745 3.255 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.186 1.186 12 N -0.180 5.180 13 N -0.135 5.135 14 C -0.337 4.337 15 S 0.224 5.776 16 C -0.304 4.304 17 C 0.297 3.703 18 O -0.318 6.318 19 C -0.193 4.193 20 C -0.048 4.048 21 C -0.167 4.167 22 C 0.092 3.908 23 C -0.196 4.196 24 C -0.025 4.025 25 C -0.146 4.146 26 C -0.024 4.024 27 O -0.214 6.214 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.616 -21.432 0.491 21.597 hybrid contribution -0.423 1.482 0.039 1.542 sum 2.193 -19.950 0.530 20.077 Atomic orbital electron populations 1.21510 0.78456 1.02757 1.01705 1.46017 1.06120 1.05249 1.64208 1.21626 0.84733 0.88432 0.94994 1.18105 0.94714 0.86446 1.49403 0.89776 1.25799 0.94352 1.01305 0.93296 1.70009 1.00699 1.34999 1.30362 0.86117 0.79413 0.80817 0.79187 1.19371 1.19987 1.18648 1.75430 1.15297 0.97831 1.29473 1.74504 1.15141 1.07729 1.16107 1.25552 0.91696 0.93236 1.23173 1.84945 1.06742 0.90215 1.95650 1.23873 1.02163 0.95240 1.09117 1.21661 0.88021 0.89272 0.71371 1.90547 1.26620 1.78359 1.36261 1.20143 0.94425 0.93707 1.11047 1.21104 0.90463 1.00874 0.92381 1.20025 1.00589 0.88840 1.07227 1.19991 0.87469 0.90308 0.93027 1.20680 0.93432 0.95687 1.09758 1.20483 0.98321 0.91415 0.92305 1.21790 0.96893 0.92044 1.03828 1.23899 0.92090 0.85716 1.00738 1.86794 1.35493 1.17865 1.81267 0.92491 0.90319 0.91459 0.90978 0.85640 0.85662 0.83341 0.84469 0.84476 0.88756 0.88946 0.90186 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.87 59.85 0.65 2.52 16 2 N -0.51 -12.47 3.26 -123.18 -0.40 -12.87 16 3 C 0.35 9.66 7.53 -154.81 -1.17 8.49 16 4 C -0.45 -11.78 9.04 -38.32 -0.35 -12.13 16 5 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 6 C 0.08 1.98 5.50 -17.29 -0.10 1.89 16 7 N -0.74 -20.08 11.94 55.56 0.66 -19.41 16 8 Si 0.92 18.44 29.56 -169.99 -5.03 13.41 16 9 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 12 N -0.33 -9.89 10.48 31.26 0.33 -9.56 16 13 N -0.29 -7.73 11.62 30.89 0.36 -7.37 16 14 C 0.04 0.84 8.09 -87.27 -0.71 0.14 16 15 S 0.00 -0.05 20.92 -107.50 -2.25 -2.30 16 16 C -0.15 -2.40 4.32 36.01 0.16 -2.25 16 17 C 0.42 5.93 7.13 -30.82 -0.22 5.71 16 18 O -0.44 -7.23 15.87 5.54 0.09 -7.14 16 19 C -0.19 -2.27 5.87 -105.03 -0.62 -2.89 16 20 C -0.03 -0.32 9.40 -39.58 -0.37 -0.69 16 21 C -0.15 -1.50 9.99 -39.72 -0.40 -1.90 16 22 C 0.14 1.44 7.05 -38.66 -0.27 1.17 16 23 C -0.19 -1.89 6.26 -104.13 -0.65 -2.54 16 24 C -0.01 -0.07 9.59 -39.24 -0.38 -0.45 16 25 C -0.11 -0.69 7.12 -26.51 -0.19 -0.87 16 26 C 0.05 0.30 8.01 38.06 0.30 0.60 16 27 O -0.30 -2.92 11.09 -19.57 -0.22 -3.14 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 30 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 31 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 32 H 0.13 1.90 8.08 -51.92 -0.42 1.48 16 33 H 0.13 1.90 8.09 -51.92 -0.42 1.48 16 34 H 0.15 1.43 7.04 -52.49 -0.37 1.06 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.41 7.66 -52.48 -0.40 1.00 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -34.82 362.45 -9.75 -44.57 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.46 Total: 1.56 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.30 Total: -3.21 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.95 Total: -49.22 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.13 Total: -10.28 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.25 Total: -2.30 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.82 -9.75 -44.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357104410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.519 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds