Wall clock time and date at job start Wed Apr 1 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38361 * 127.15624 * 2 1 4 4 C 1.39771 * 126.55905 * 0.02562 * 3 2 1 5 5 H 1.07996 * 120.00583 * 0.30492 * 4 3 2 6 6 C 1.40082 * 119.99820 * 180.30358 * 4 3 2 7 7 N 1.30820 * 119.99938 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00346 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47379 * 90.00173 * 8 6 4 10 10 H 1.48503 * 109.47433 * 210.00530 * 8 6 4 11 11 H 1.48501 * 109.47081 * 330.00211 * 8 6 4 12 12 N 1.33096 * 106.87125 * 180.29229 * 3 2 1 13 13 N 1.28518 * 109.74945 * 359.74864 * 12 3 2 14 14 C 1.32394 * 110.19873 * 359.97438 * 13 12 3 15 15 S 1.76197 * 126.25409 * 180.02562 * 14 13 12 16 16 C 1.80997 * 100.00256 * 0.03121 * 15 14 13 17 17 C 1.50705 * 109.47509 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99399 * 359.97438 * 17 16 15 19 19 C 1.46856 * 120.00232 * 180.02562 * 17 16 15 20 20 C 1.40033 * 120.29543 * 359.97438 * 19 17 16 21 21 C 1.36377 * 120.30860 * 180.25399 * 20 19 17 22 22 C 1.39657 * 120.58661 * 0.27793 * 21 20 19 23 23 C 1.39297 * 119.12684 * 359.06911 * 22 21 20 24 24 C 1.37214 * 120.86350 * 1.09573 * 23 22 21 25 25 C 1.51654 * 107.00651 * 181.09164 * 23 22 21 26 26 C 1.54709 * 101.90061 * 15.52125 * 25 23 22 27 27 O 1.35947 * 129.73547 * 179.35499 * 22 21 20 28 28 H 1.08999 * 109.46533 * 270.15639 * 1 2 3 29 29 H 1.09005 * 109.46841 * 30.15522 * 1 2 3 30 30 H 1.08997 * 109.46839 * 150.15526 * 1 2 3 31 31 H 0.97002 * 120.00306 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47540 * 59.99710 * 16 15 14 33 33 H 1.09000 * 109.46984 * 299.99771 * 16 15 14 34 34 H 1.07998 * 119.84986 * 0.22821 * 20 19 17 35 35 H 1.08002 * 119.70459 * 179.97438 * 21 20 19 36 36 H 1.08006 * 120.15132 * 179.38414 * 24 23 22 37 37 H 1.08994 * 110.94749 * 133.66872 * 25 23 22 38 38 H 1.09002 * 110.94858 * 257.33628 * 25 23 22 39 39 H 1.09004 * 110.74370 * 93.01947 * 26 25 23 40 40 H 1.09007 * 110.73842 * 216.16823 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3007 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8596 2.7005 0.0059 6 6 2.8768 3.4568 -0.0060 7 7 4.1477 3.1466 -0.0130 8 14 2.3532 5.2499 -0.0061 9 1 2.2216 5.7272 1.3939 10 1 3.3746 6.0639 -0.7127 11 1 1.0469 5.3841 -0.6996 12 7 3.5491 0.6413 -0.0065 13 7 3.5371 -0.6438 -0.0051 14 6 2.2904 -1.0893 0.0029 15 16 1.7873 -2.7779 0.0083 16 6 3.4058 -3.5882 0.0009 17 6 3.2190 -5.0836 0.0037 18 8 2.1015 -5.5551 0.0105 19 6 4.3900 -5.9699 -0.0007 20 6 5.6829 -5.4321 -0.0080 21 6 6.7705 -6.2548 -0.0174 22 6 6.6119 -7.6423 -0.0256 23 6 5.3262 -8.1779 -0.0043 24 6 4.2235 -7.3613 0.0018 25 6 5.4745 -9.6871 0.0080 26 6 6.9623 -9.8583 0.3960 27 8 7.5517 -8.6244 -0.0471 28 1 -0.3632 0.0028 1.0277 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8914 -0.5114 31 1 4.8181 3.8476 -0.0172 32 1 3.9655 -3.2899 0.8873 33 1 3.9559 -3.2928 -0.8925 34 1 5.8195 -4.3608 -0.0067 35 1 7.7633 -5.8296 -0.0234 36 1 3.2317 -7.7890 0.0082 37 1 4.8224 -10.1367 0.7568 38 1 5.2780 -10.1061 -0.9789 39 1 7.0693 -9.9718 1.4748 40 1 7.4019 -10.7086 -0.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357104410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:15 Heat of formation + Delta-G solvation = 12.771570 kcal Electronic energy + Delta-G solvation = -25688.979799 eV Core-core repulsion = 21789.084997 eV Total energy + Delta-G solvation = -3899.894803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44921 -42.23134 -40.65064 -38.15157 -35.61942 -35.15256 -33.91516 -32.47058 -31.31762 -30.85483 -29.84115 -28.22484 -27.40098 -25.01037 -24.09251 -22.87262 -22.79268 -22.46678 -20.83636 -19.26737 -18.52648 -18.21312 -17.92332 -17.50850 -17.23510 -16.99022 -16.69923 -16.29076 -16.10243 -15.93693 -15.23917 -15.14256 -14.61574 -14.58583 -14.25096 -14.11146 -13.95792 -13.83734 -13.80047 -13.65112 -13.43214 -13.12710 -12.93713 -12.76598 -12.68160 -12.01713 -11.94594 -11.85044 -11.81111 -11.66343 -11.44212 -11.08903 -10.58368 -10.37249 -10.28739 -10.09726 -9.30035 -8.56564 -8.53980 -6.57697 -0.51363 0.23977 0.32390 1.15504 1.17239 1.19837 1.42733 1.58737 1.62098 2.17122 2.19142 2.44840 2.50412 2.61125 2.76373 3.34453 3.40349 3.59954 3.79201 3.84646 4.02851 4.08104 4.09465 4.15406 4.26307 4.40529 4.45082 4.45287 4.61818 4.61945 4.79173 4.86030 4.87524 4.96056 4.98250 5.06697 5.18575 5.21231 5.32607 5.40320 5.57240 6.02228 6.02831 6.22411 6.25816 6.76323 6.92113 8.41525 8.63553 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002068 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.132893 B =13533.938553 C =14662.658244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.521 5.521 3 C 0.317 3.683 4 C -0.470 4.470 5 H 0.102 0.898 6 C 0.029 3.971 7 N -0.786 5.786 8 Si 1.006 2.994 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.249 1.249 12 N -0.385 5.385 13 N -0.324 5.324 14 C 0.047 3.953 15 S 0.021 5.979 16 C -0.153 4.153 17 C 0.433 3.567 18 O -0.469 6.469 19 C -0.206 4.206 20 C -0.030 4.030 21 C -0.156 4.156 22 C 0.134 3.866 23 C -0.198 4.198 24 C -0.011 4.011 25 C -0.106 4.106 26 C 0.045 3.955 27 O -0.316 6.316 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.285 0.715 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -22.030 0.632 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.071 3.929 4 C -0.511 4.511 5 H 0.120 0.880 6 C -0.192 4.192 7 N -0.411 5.411 8 Si 0.825 3.175 9 H -0.186 1.186 10 H -0.195 1.195 11 H -0.172 1.172 12 N -0.232 5.232 13 N -0.168 5.168 14 C -0.327 4.327 15 S 0.248 5.752 16 C -0.302 4.302 17 C 0.312 3.688 18 O -0.346 6.346 19 C -0.209 4.209 20 C -0.048 4.048 21 C -0.175 4.175 22 C 0.088 3.912 23 C -0.199 4.199 24 C -0.029 4.029 25 C -0.143 4.143 26 C -0.029 4.029 27 O -0.229 6.229 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.854 -22.751 0.566 22.833 hybrid contribution -0.147 1.588 0.024 1.595 sum 1.706 -21.164 0.590 21.240 Atomic orbital electron populations 1.21850 0.75387 1.04414 1.03349 1.46351 1.08071 1.04440 1.63395 1.22046 0.85122 0.89872 0.95875 1.18614 0.95974 0.86480 1.49994 0.87965 1.26971 0.93950 1.06409 0.91884 1.70147 1.02323 1.36994 1.31644 0.84859 0.79390 0.73769 0.79499 1.18605 1.19528 1.17175 1.75298 1.17170 0.99171 1.31556 1.74381 1.16802 1.07093 1.18568 1.26461 0.91270 0.95602 1.19361 1.84879 1.08757 0.86501 1.95063 1.24031 1.00367 0.96228 1.09605 1.21611 0.88442 0.88408 0.70369 1.90537 1.27568 1.78404 1.38114 1.19959 0.93747 0.93937 1.13270 1.21162 0.90222 1.01281 0.92177 1.20212 1.01037 0.89148 1.07064 1.20217 0.88091 0.90645 0.92276 1.21022 0.92654 0.97690 1.08522 1.20562 0.99021 0.91045 0.92269 1.21920 0.97574 0.89590 1.05188 1.24246 0.91746 0.84928 1.01992 1.86783 1.36019 1.18889 1.81219 0.90770 0.89167 0.89333 0.90494 0.85252 0.85309 0.82894 0.83145 0.84092 0.86907 0.87781 0.88938 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.32 10.87 127.77 1.39 4.71 16 2 N -0.52 -25.43 3.26 -543.62 -1.77 -27.20 16 3 C 0.32 18.12 7.53 133.23 1.00 19.12 16 4 C -0.47 -25.13 9.04 23.09 0.21 -24.92 16 5 H 0.10 4.85 7.31 -2.91 -0.02 4.83 16 6 C 0.03 1.47 5.50 85.29 0.47 1.94 16 7 N -0.79 -44.21 11.94 21.86 0.26 -43.95 16 8 Si 1.01 37.61 29.56 68.60 2.03 39.64 16 9 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 10 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 12 N -0.39 -23.81 10.48 -55.02 -0.58 -24.38 16 13 N -0.32 -17.92 11.62 -56.17 -0.65 -18.57 16 14 C 0.05 2.26 8.09 179.18 1.45 3.71 16 15 S 0.02 0.80 20.92 -56.49 -1.18 -0.38 16 16 C -0.15 -4.77 4.32 71.24 0.31 -4.46 16 17 C 0.43 12.13 7.13 27.94 0.20 12.33 16 18 O -0.47 -15.12 15.87 -3.08 -0.05 -15.17 16 19 C -0.21 -4.84 5.87 -20.13 -0.12 -4.96 16 20 C -0.03 -0.63 9.40 22.27 0.21 -0.42 16 21 C -0.16 -3.05 9.99 22.18 0.22 -2.82 16 22 C 0.13 2.61 7.05 22.87 0.16 2.77 16 23 C -0.20 -3.51 6.26 -19.55 -0.12 -3.64 16 24 C -0.01 -0.22 9.59 22.49 0.22 -0.01 16 25 C -0.11 -1.05 7.12 30.74 0.22 -0.83 16 26 C 0.04 0.40 8.01 72.56 0.58 0.98 16 27 O -0.32 -5.51 11.09 -92.95 -1.03 -6.54 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 3.00 7.54 -2.38 -0.02 2.98 16 30 H 0.09 2.77 7.85 -2.39 -0.02 2.75 16 31 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 32 H 0.13 3.96 8.08 -2.40 -0.02 3.94 16 33 H 0.13 3.96 8.09 -2.40 -0.02 3.94 16 34 H 0.15 2.96 7.04 -2.91 -0.02 2.94 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.14 2.76 7.66 -2.91 -0.02 2.74 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.14 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -78.18 362.45 4.51 -73.67 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.09 Total: 19.37 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.39 Total: 3.51 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -2.74 Total: -114.10 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.08 Total: -21.71 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -1.18 Total: -0.38 kcal Total: -78.18 4.51 -73.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357104410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.438 kcal (2) G-P(sol) polarization free energy of solvation -78.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds