Wall clock time and date at job start Wed Apr 1 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35400 * 126.44139 * 2 1 4 4 C 1.35670 * 107.16961 * 179.97438 * 3 2 1 5 5 N 1.33041 * 108.35294 * 359.73950 * 4 3 2 6 6 C 1.31724 * 109.09763 * 0.42958 * 5 4 3 7 7 C 1.47257 * 125.86883 * 179.84013 * 6 5 4 8 8 O 1.21667 * 120.00065 * 184.73937 * 7 6 5 9 9 C 1.47510 * 120.00145 * 4.45450 * 7 6 5 10 10 C 1.39869 * 120.07951 * 354.00307 * 9 7 6 11 11 C 1.37619 * 119.91877 * 179.74270 * 10 9 7 12 12 C 1.39190 * 120.08149 * 0.53197 * 11 10 9 13 13 N 1.39396 * 119.91952 * 179.72130 * 12 11 10 14 14 C 1.34783 * 119.99746 * 146.73443 * 13 12 11 15 15 O 1.21279 * 119.99821 * 354.84457 * 14 13 12 16 16 C 1.50696 * 119.99640 * 174.83831 * 14 13 12 17 17 S 1.81003 * 109.47016 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00215 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99518 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47208 * 90.00250 * 22 20 18 24 24 H 1.48498 * 109.47219 * 209.99979 * 22 20 18 25 25 H 1.48497 * 109.47281 * 330.00213 * 22 20 18 26 26 C 1.39190 * 120.15888 * 359.74091 * 12 11 10 27 27 C 1.37616 * 120.08165 * 359.97438 * 26 12 11 28 28 H 1.08996 * 109.47628 * 270.00364 * 1 2 3 29 29 H 1.08994 * 109.47196 * 30.01186 * 1 2 3 30 30 H 1.09005 * 109.46713 * 150.00665 * 1 2 3 31 31 H 1.08007 * 126.41904 * 0.02562 * 3 2 1 32 32 H 1.07998 * 125.82698 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.04021 * 359.97438 * 10 9 7 34 34 H 1.07998 * 119.96076 * 180.27649 * 11 10 9 35 35 H 0.96993 * 119.99804 * 326.73885 * 13 12 11 36 36 H 1.08994 * 109.47527 * 300.00096 * 16 14 13 37 37 H 1.09004 * 109.47031 * 60.00480 * 16 14 13 38 38 H 0.97008 * 119.99753 * 179.97438 * 21 20 18 39 39 H 1.08001 * 119.95558 * 179.97438 * 26 12 11 40 40 H 1.07999 * 120.04029 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0892 0.0000 4 6 3.5500 0.6415 0.0006 5 7 3.5286 -0.6888 0.0067 6 6 2.2772 -1.0998 0.0006 7 6 1.8297 -2.5027 0.0010 8 8 0.6450 -2.7634 -0.0920 9 6 2.8184 -3.5922 0.1079 10 6 4.1865 -3.3023 0.0826 11 6 5.1060 -4.3207 0.1879 12 6 4.6762 -5.6391 0.3082 13 7 5.6105 -6.6687 0.4088 14 6 5.3347 -7.7589 1.1517 15 8 4.3153 -7.8038 1.8073 16 6 6.2928 -8.9219 1.1676 17 16 5.6471 -10.2207 2.2504 18 6 6.9273 -11.4203 2.0865 19 1 7.7785 -11.2184 1.4531 20 6 6.8419 -12.6244 2.7714 21 7 5.8042 -12.8706 3.5429 22 14 8.1988 -13.8964 2.5971 23 1 9.2324 -13.6633 3.6376 24 1 7.6266 -15.2565 2.7638 25 1 8.8161 -13.7805 1.2515 26 6 3.3156 -5.9320 0.3280 27 6 2.3903 -4.9181 0.2291 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8898 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.9510 2.1213 0.0004 32 1 4.4357 1.2594 0.0011 33 1 4.5208 -2.2800 -0.0156 34 1 6.1625 -4.0972 0.1729 35 1 6.4592 -6.6004 -0.0559 36 1 6.4055 -9.3137 0.1568 37 1 7.2622 -8.5890 1.5385 38 1 5.7443 -13.7124 4.0213 39 1 2.9857 -6.9561 0.4211 40 1 1.3347 -5.1461 0.2449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357126474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:13 Heat of formation + Delta-G solvation = 33.787305 kcal Electronic energy + Delta-G solvation = -25444.416428 eV Core-core repulsion = 21545.432936 eV Total energy + Delta-G solvation = -3898.983492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.69250 -40.46399 -39.38706 -37.86562 -34.90338 -34.40250 -32.47242 -31.53050 -30.86253 -30.03651 -28.55006 -27.66114 -25.56320 -24.76217 -23.18002 -22.38909 -21.61423 -20.52150 -19.86383 -18.16144 -17.72442 -17.50832 -16.59771 -16.49173 -16.43207 -15.74883 -15.24237 -14.84150 -14.76950 -14.54566 -14.43802 -14.23147 -13.98662 -13.92091 -13.56744 -13.41271 -13.36426 -13.12469 -12.88452 -12.70553 -12.52626 -12.05471 -11.37181 -11.09768 -11.06525 -10.81063 -10.50978 -10.37098 -10.25927 -10.14708 -9.88061 -9.55423 -9.10677 -9.01827 -8.96632 -8.32085 -8.14817 -6.56755 -6.26037 -3.97813 0.25292 1.24620 1.45028 2.10952 2.16050 2.76953 2.85095 3.03692 3.20286 3.24515 3.28542 3.48665 3.57089 3.85763 4.14792 4.15505 4.27228 4.61839 4.67395 4.77007 4.89717 4.98536 4.99285 5.06368 5.09517 5.13169 5.34074 5.40831 5.48414 5.61267 5.73006 5.76040 6.01611 6.03533 6.12077 6.23329 6.30972 6.36915 6.40293 6.63239 6.98065 7.03833 7.40837 7.50550 7.55607 8.30324 8.31570 9.19423 10.81350 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.001735 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.912842 B =16130.836813 C =16655.985296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.419 5.419 3 C -0.029 4.029 4 C -0.027 4.027 5 N -0.433 5.433 6 C 0.121 3.879 7 C 0.492 3.508 8 O -0.463 6.463 9 C -0.194 4.194 10 C -0.043 4.043 11 C -0.175 4.175 12 C 0.202 3.798 13 N -0.680 5.680 14 C 0.531 3.469 15 O -0.490 6.490 16 C -0.155 4.155 17 S -0.056 6.056 18 C -0.537 4.537 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.147 4.147 27 C -0.031 4.031 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.131 0.869 35 H 0.412 0.588 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 29.343 -10.410 31.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.099 5.099 3 C -0.167 4.167 4 C -0.180 4.180 5 N -0.155 5.155 6 C -0.134 4.134 7 C 0.371 3.629 8 O -0.338 6.338 9 C -0.196 4.196 10 C -0.061 4.061 11 C -0.196 4.196 12 C 0.105 3.895 13 N -0.326 5.326 14 C 0.319 3.681 15 O -0.361 6.361 16 C -0.305 4.305 17 S 0.170 5.830 18 C -0.685 4.685 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.168 4.168 27 C -0.050 4.050 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.201 0.799 32 H 0.198 0.802 33 H 0.192 0.808 34 H 0.149 0.851 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.162 0.838 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.577 28.311 -9.220 30.724 hybrid contribution 1.880 -0.014 -0.980 2.120 sum -5.697 28.297 -10.200 30.614 Atomic orbital electron populations 1.22416 0.75094 1.05923 1.04682 1.45257 1.08493 1.06250 1.49919 1.23029 0.91646 0.93069 1.08999 1.22587 0.96640 0.91033 1.07779 1.69931 1.17657 1.12045 1.15883 1.23456 0.86096 0.90714 1.13173 1.19138 0.88058 0.84242 0.71423 1.90617 1.18798 1.85358 1.38995 1.19729 0.93993 0.92972 1.12925 1.22276 0.91169 1.01826 0.90860 1.20954 1.00491 0.90412 1.07728 1.18204 0.89624 0.87765 0.93862 1.43746 1.19910 1.18309 1.50641 1.20605 0.87414 0.82491 0.77635 1.90735 1.26465 1.79423 1.39499 1.23559 1.01433 0.98566 1.06967 1.85436 1.30984 1.09799 1.56764 1.22853 1.08338 1.03392 1.33952 0.90793 1.24998 0.96529 0.97593 0.94433 1.70016 1.28206 1.24661 1.27308 0.86147 0.80798 0.79771 0.78669 1.20233 1.20720 1.19664 1.21171 0.91082 1.01032 1.03473 1.21163 1.00211 0.90620 0.92987 0.89777 0.89258 0.87415 0.79929 0.80240 0.80843 0.85083 0.75133 0.88597 0.88716 0.92104 0.83775 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.69 59.85 0.64 0.96 16 2 N -0.42 -3.40 3.16 -121.95 -0.39 -3.79 16 3 C -0.03 -0.18 11.54 -16.90 -0.19 -0.37 16 4 C -0.03 -0.20 11.85 -17.95 -0.21 -0.41 16 5 N -0.43 -4.49 7.89 -11.26 -0.09 -4.58 16 6 C 0.12 1.31 7.63 -154.45 -1.18 0.14 16 7 C 0.49 6.03 7.10 -32.14 -0.23 5.80 16 8 O -0.46 -6.06 14.68 5.22 0.08 -5.99 16 9 C -0.19 -2.48 5.88 -104.90 -0.62 -3.09 16 10 C -0.04 -0.50 9.35 -39.20 -0.37 -0.87 16 11 C -0.18 -2.02 9.94 -39.45 -0.39 -2.41 16 12 C 0.20 2.77 6.28 -83.71 -0.53 2.25 16 13 N -0.68 -9.10 5.32 -9.84 -0.05 -9.15 16 14 C 0.53 9.49 7.58 -10.98 -0.08 9.41 16 15 O -0.49 -10.59 13.52 5.56 0.08 -10.51 16 16 C -0.15 -2.96 6.16 36.00 0.22 -2.73 16 17 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 18 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 22 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.15 -2.19 8.63 -39.46 -0.34 -2.53 16 27 C -0.03 -0.42 9.58 -39.20 -0.38 -0.79 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.11 0.73 6.25 -51.93 -0.32 0.41 16 31 H 0.18 0.40 8.06 -52.48 -0.42 -0.02 16 32 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.17 1.90 4.79 -52.49 -0.25 1.65 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.41 3.97 8.81 -40.82 -0.36 3.61 16 36 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.14 2.39 6.39 -52.49 -0.34 2.06 16 40 H 0.13 1.70 7.66 -52.49 -0.40 1.30 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -36.01 363.19 -9.04 -45.05 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.18 Total: 3.54 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.46 Total: -7.35 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.21 Total: -42.60 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.15 Total: -16.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.01 -9.04 -45.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357126474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.833 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds