Wall clock time and date at job start Wed Apr 1 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35400 * 126.44139 * 2 1 4 4 C 1.35670 * 107.16961 * 179.97438 * 3 2 1 5 5 N 1.33041 * 108.35294 * 359.73950 * 4 3 2 6 6 C 1.31724 * 109.09763 * 0.42958 * 5 4 3 7 7 C 1.47257 * 125.86883 * 179.84013 * 6 5 4 8 8 O 1.21667 * 120.00065 * 184.73937 * 7 6 5 9 9 C 1.47510 * 120.00145 * 4.45450 * 7 6 5 10 10 C 1.39869 * 120.07951 * 354.00307 * 9 7 6 11 11 C 1.37619 * 119.91877 * 179.74270 * 10 9 7 12 12 C 1.39190 * 120.08149 * 0.53197 * 11 10 9 13 13 N 1.39396 * 119.91952 * 179.72130 * 12 11 10 14 14 C 1.34783 * 119.99746 * 146.73443 * 13 12 11 15 15 O 1.21279 * 119.99821 * 354.84457 * 14 13 12 16 16 C 1.50696 * 119.99640 * 174.83831 * 14 13 12 17 17 S 1.81003 * 109.47016 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00215 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99518 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47208 * 90.00250 * 22 20 18 24 24 H 1.48498 * 109.47219 * 209.99979 * 22 20 18 25 25 H 1.48497 * 109.47281 * 330.00213 * 22 20 18 26 26 C 1.39190 * 120.15888 * 359.74091 * 12 11 10 27 27 C 1.37616 * 120.08165 * 359.97438 * 26 12 11 28 28 H 1.08996 * 109.47628 * 270.00364 * 1 2 3 29 29 H 1.08994 * 109.47196 * 30.01186 * 1 2 3 30 30 H 1.09005 * 109.46713 * 150.00665 * 1 2 3 31 31 H 1.08007 * 126.41904 * 0.02562 * 3 2 1 32 32 H 1.07998 * 125.82698 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.04021 * 359.97438 * 10 9 7 34 34 H 1.07998 * 119.96076 * 180.27649 * 11 10 9 35 35 H 0.96993 * 119.99804 * 326.73885 * 13 12 11 36 36 H 1.08994 * 109.47527 * 300.00096 * 16 14 13 37 37 H 1.09004 * 109.47031 * 60.00480 * 16 14 13 38 38 H 0.97008 * 119.99753 * 179.97438 * 21 20 18 39 39 H 1.08001 * 119.95558 * 179.97438 * 26 12 11 40 40 H 1.07999 * 120.04029 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0892 0.0000 4 6 3.5500 0.6415 0.0006 5 7 3.5286 -0.6888 0.0067 6 6 2.2772 -1.0998 0.0006 7 6 1.8297 -2.5027 0.0010 8 8 0.6450 -2.7634 -0.0920 9 6 2.8184 -3.5922 0.1079 10 6 4.1865 -3.3023 0.0826 11 6 5.1060 -4.3207 0.1879 12 6 4.6762 -5.6391 0.3082 13 7 5.6105 -6.6687 0.4088 14 6 5.3347 -7.7589 1.1517 15 8 4.3153 -7.8038 1.8073 16 6 6.2928 -8.9219 1.1676 17 16 5.6471 -10.2207 2.2504 18 6 6.9273 -11.4203 2.0865 19 1 7.7785 -11.2184 1.4531 20 6 6.8419 -12.6244 2.7714 21 7 5.8042 -12.8706 3.5429 22 14 8.1988 -13.8964 2.5971 23 1 9.2324 -13.6633 3.6376 24 1 7.6266 -15.2565 2.7638 25 1 8.8161 -13.7805 1.2515 26 6 3.3156 -5.9320 0.3280 27 6 2.3903 -4.9181 0.2291 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8898 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.9510 2.1213 0.0004 32 1 4.4357 1.2594 0.0011 33 1 4.5208 -2.2800 -0.0156 34 1 6.1625 -4.0972 0.1729 35 1 6.4592 -6.6004 -0.0559 36 1 6.4055 -9.3137 0.1568 37 1 7.2622 -8.5890 1.5385 38 1 5.7443 -13.7124 4.0213 39 1 2.9857 -6.9561 0.4211 40 1 1.3347 -5.1461 0.2449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357126474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:12 Heat of formation + Delta-G solvation = 11.067274 kcal Electronic energy + Delta-G solvation = -25445.401643 eV Core-core repulsion = 21545.432936 eV Total energy + Delta-G solvation = -3899.968707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.30185 -41.66674 -40.42002 -38.99339 -36.00121 -35.13235 -34.58698 -32.51923 -31.99102 -31.01296 -29.67840 -28.18736 -27.67373 -25.68277 -24.24662 -23.23222 -22.25250 -21.79155 -20.69755 -19.92655 -18.83244 -18.48867 -17.88237 -17.49708 -17.06120 -16.88039 -16.76639 -16.38255 -16.15208 -15.48644 -15.41685 -15.27496 -15.09457 -14.82521 -14.59834 -14.51006 -14.34567 -14.00851 -13.90483 -13.85161 -13.45439 -13.41157 -13.17190 -12.89158 -12.62209 -12.36077 -11.75751 -11.56436 -11.32785 -11.17036 -11.14305 -10.85768 -10.75783 -10.29718 -10.00542 -9.60707 -9.24085 -8.67845 -8.35181 -6.13521 -0.68548 0.40017 0.42371 1.22040 1.34508 1.43124 1.44792 1.55832 1.56335 1.62939 2.07843 2.21224 2.26376 2.74944 2.83886 2.99573 3.26575 3.53177 3.70582 3.86376 3.93610 3.96762 4.05351 4.26149 4.29486 4.31983 4.39373 4.46512 4.46962 4.51834 4.60267 4.67339 4.98730 5.14213 5.18703 5.24978 5.33287 5.41866 5.42313 5.73007 5.82638 5.96819 6.19656 6.20911 6.29070 6.85893 7.01745 7.06604 8.73920 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.001735 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.912842 B =16130.836813 C =16655.985296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.419 5.419 3 C -0.004 4.004 4 C -0.043 4.043 5 N -0.448 5.448 6 C 0.077 3.923 7 C 0.489 3.511 8 O -0.483 6.483 9 C -0.197 4.197 10 C -0.039 4.039 11 C -0.157 4.157 12 C 0.184 3.816 13 N -0.655 5.655 14 C 0.535 3.465 15 O -0.536 6.536 16 C -0.129 4.129 17 S -0.149 6.149 18 C -0.546 4.546 19 H 0.086 0.914 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.257 1.257 26 C -0.164 4.164 27 C -0.042 4.042 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.208 0.792 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.433 0.567 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.119 0.881 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 32.514 -11.763 34.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.099 5.099 3 C -0.143 4.143 4 C -0.196 4.196 5 N -0.171 5.171 6 C -0.176 4.176 7 C 0.370 3.630 8 O -0.360 6.360 9 C -0.199 4.199 10 C -0.057 4.057 11 C -0.178 4.178 12 C 0.088 3.912 13 N -0.303 5.303 14 C 0.323 3.677 15 O -0.411 6.411 16 C -0.280 4.280 17 S 0.078 5.922 18 C -0.693 4.693 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.181 1.181 26 C -0.184 4.184 27 C -0.061 4.061 28 H 0.109 0.891 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.245 0.755 32 H 0.225 0.775 33 H 0.205 0.795 34 H 0.184 0.816 35 H 0.274 0.726 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.300 31.501 -10.614 33.661 hybrid contribution 1.117 -0.684 -0.627 1.452 sum -4.184 30.817 -11.241 33.069 Atomic orbital electron populations 1.22581 0.73797 1.06723 1.05357 1.45487 1.09457 1.06095 1.48876 1.23822 0.90908 0.94219 1.05398 1.23221 0.98495 0.90201 1.07718 1.69785 1.17625 1.13864 1.15837 1.23004 0.87000 0.90543 1.17014 1.19195 0.87603 0.85282 0.70891 1.90598 1.19361 1.85908 1.40150 1.19977 0.95086 0.92800 1.12045 1.22499 0.90580 1.02538 0.90098 1.21259 1.02212 0.88867 1.05423 1.18298 0.89000 0.88615 0.95260 1.43324 1.20628 1.16822 1.49485 1.20365 0.86432 0.83174 0.77749 1.90735 1.28192 1.80363 1.41800 1.23371 1.02081 0.96448 1.06090 1.85637 1.33177 1.13449 1.59911 1.23213 1.08440 1.03707 1.33979 0.89583 1.26129 0.99156 1.00047 0.93851 1.70187 1.30631 1.25412 1.28585 0.84947 0.77282 0.76357 0.79361 1.19318 1.20484 1.18082 1.21059 0.92393 1.00109 1.04839 1.21157 1.00045 0.91114 0.93778 0.89149 0.85674 0.89417 0.75513 0.77487 0.79530 0.81562 0.72644 0.86367 0.86237 0.92020 0.86337 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.69 127.77 1.37 1.87 16 2 N -0.42 -5.94 3.16 -539.73 -1.70 -7.64 16 3 C 0.00 -0.03 11.54 83.55 0.96 0.93 16 4 C -0.04 -0.50 11.85 83.91 0.99 0.50 16 5 N -0.45 -8.49 7.89 -189.53 -1.50 -9.98 16 6 C 0.08 1.61 7.63 136.19 1.04 2.65 16 7 C 0.49 12.32 7.10 27.09 0.19 12.52 16 8 O -0.48 -13.35 14.68 -4.24 -0.06 -13.42 16 9 C -0.20 -5.14 5.88 -20.05 -0.12 -5.26 16 10 C -0.04 -0.86 9.35 22.52 0.21 -0.65 16 11 C -0.16 -3.31 9.94 22.35 0.22 -3.09 16 12 C 0.18 4.96 6.28 38.40 0.24 5.20 16 13 N -0.66 -16.70 5.32 -303.43 -1.61 -18.31 16 14 C 0.54 19.16 7.58 87.65 0.66 19.82 16 15 O -0.54 -24.22 13.52 -3.03 -0.04 -24.26 16 16 C -0.13 -4.83 6.16 71.23 0.44 -4.39 16 17 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 18 C -0.55 -30.55 9.50 67.95 0.65 -29.90 16 19 H 0.09 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.73 5.49 84.85 0.47 1.19 16 21 N -0.91 -55.71 13.22 21.65 0.29 -55.43 16 22 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 C -0.16 -5.14 8.63 22.35 0.19 -4.95 16 27 C -0.04 -1.21 9.58 22.52 0.22 -1.00 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 1.19 6.25 -2.38 -0.01 1.18 16 31 H 0.23 -0.31 8.06 -2.91 -0.02 -0.33 16 32 H 0.21 1.03 8.06 -2.91 -0.02 1.00 16 33 H 0.19 3.76 4.79 -2.91 -0.01 3.75 16 34 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.43 7.14 8.81 -92.71 -0.82 6.33 16 36 H 0.12 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.12 4.31 6.39 -2.91 -0.02 4.30 16 40 H 0.13 3.72 7.66 -2.91 -0.02 3.70 16 Total: -1.00 -83.29 363.19 4.26 -79.03 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.29 Total: 18.65 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 7.73 Total: -4.55 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -4.53 Total: -91.37 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.10 Total: -37.68 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -83.29 4.26 -79.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357126474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.094 kcal (2) G-P(sol) polarization free energy of solvation -83.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds