Wall clock time and date at job start Wed Apr 1 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46765 * 2 1 4 4 C 1.52990 * 109.47073 * 119.99533 * 2 1 3 5 5 S 1.81402 * 109.47320 * 185.00024 * 4 2 1 6 6 C 1.81397 * 103.00374 * 180.02562 * 5 4 2 7 7 O 1.42094 * 109.47266 * 296.39407 * 5 4 2 8 8 N 1.46498 * 109.47429 * 240.00159 * 2 1 3 9 9 C 1.46506 * 119.99923 * 299.99767 * 8 2 1 10 10 S 1.65594 * 120.00572 * 119.99777 * 8 2 1 11 11 O 1.42106 * 106.40038 * 23.53814 * 10 8 2 12 12 O 1.42094 * 106.40667 * 156.46043 * 10 8 2 13 13 C 1.76202 * 107.21901 * 270.00290 * 10 8 2 14 14 C 1.38635 * 119.74671 * 269.72893 * 13 10 8 15 15 C 1.37618 * 120.24841 * 179.72404 * 14 13 10 16 16 C 1.40718 * 119.74549 * 0.56045 * 15 14 13 17 17 C 1.41391 * 120.24480 * 179.68324 * 16 15 14 18 18 H 1.07999 * 119.99822 * 24.41264 * 17 16 15 19 19 C 1.39947 * 120.00039 * 204.40180 * 17 16 15 20 20 N 1.30827 * 119.99869 * 17.87671 * 19 17 16 21 21 Si 1.86793 * 120.00265 * 197.86938 * 19 17 16 22 22 H 1.48504 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47432 * 120.00361 * 21 19 17 24 24 H 1.48500 * 109.47135 * 240.00620 * 21 19 17 25 25 C 1.40719 * 119.50788 * 359.71273 * 16 15 14 26 26 C 1.37616 * 119.74561 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47624 * 300.00281 * 1 2 3 29 29 H 1.09003 * 109.47376 * 60.00523 * 1 2 3 30 30 H 1.08995 * 109.47473 * 305.00341 * 4 2 1 31 31 H 1.09002 * 109.47403 * 65.00343 * 4 2 1 32 32 H 1.09001 * 109.46648 * 60.00304 * 6 5 4 33 33 H 1.08997 * 109.47013 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47177 * 300.00017 * 6 5 4 35 35 H 1.09003 * 109.47365 * 89.99525 * 9 8 2 36 36 H 1.09004 * 109.46590 * 330.00300 * 9 8 2 37 37 H 1.08991 * 109.47334 * 210.00450 * 9 8 2 38 38 H 1.08001 * 119.87723 * 359.96683 * 14 13 10 39 39 H 1.08001 * 120.12797 * 180.27364 * 15 14 13 40 40 H 0.96996 * 119.99956 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.12457 * 179.97438 * 25 16 15 42 42 H 1.08001 * 119.87709 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 16 3.8478 -0.5931 1.3257 6 6 4.2567 -1.4927 2.8469 7 8 4.4178 -1.2650 0.2109 8 7 2.0184 -0.6906 -1.1961 9 6 1.6646 -2.0932 -1.4280 10 16 2.9704 0.1141 -2.2862 11 8 3.5794 1.1830 -1.5748 12 8 3.7119 -0.8789 -2.9814 13 6 1.8961 0.8535 -3.4711 14 6 1.5449 0.1513 -4.6137 15 6 0.7020 0.7166 -5.5432 16 6 0.2057 2.0169 -5.3360 17 6 -0.6556 2.6105 -6.2873 18 1 -1.2452 1.9883 -6.9442 19 6 -0.7443 4.0042 -6.3774 20 7 0.1916 4.7544 -5.8549 21 14 -2.1987 4.7935 -7.2439 22 1 -3.1114 3.7342 -7.7439 23 1 -2.9293 5.6661 -6.2900 24 1 -1.7118 5.6078 -8.3864 25 6 0.5735 2.7224 -4.1752 26 6 1.4125 2.1348 -3.2562 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6053 -0.2616 2.1369 31 1 1.7517 -1.7714 1.2057 32 1 3.9130 -2.5237 2.7628 33 1 5.3362 -1.4804 2.9972 34 1 3.7667 -1.0142 3.6948 35 1 0.7377 -2.1445 -1.9993 36 1 1.5296 -2.5968 -0.4707 37 1 2.4630 -2.5819 -1.9862 38 1 1.9311 -0.8446 -4.7732 39 1 0.4262 0.1661 -6.4305 40 1 0.1303 5.7203 -5.9177 41 1 0.1988 3.7211 -4.0064 42 1 1.6958 2.6742 -2.3644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400000025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:24 Heat of formation + Delta-G solvation = -92.304785 kcal Electronic energy + Delta-G solvation = -26841.431810 eV Core-core repulsion = 23040.131755 eV Total energy + Delta-G solvation = -3801.300055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -37.54414 -37.38782 -36.39289 -35.56239 -34.95001 -34.01002 -31.45848 -30.22504 -29.43439 -29.10847 -27.34510 -26.16599 -25.75950 -21.48780 -21.19811 -20.84997 -18.43056 -17.61518 -17.45271 -17.34375 -16.52702 -15.85134 -15.47268 -15.18912 -14.81870 -14.59460 -14.14161 -14.08884 -13.74118 -13.37536 -13.18307 -13.15464 -12.93054 -12.76810 -12.41132 -12.29484 -12.22706 -12.11077 -11.97613 -11.70954 -11.63645 -11.39854 -11.31223 -11.22734 -11.13753 -10.95685 -10.86988 -10.73301 -10.37891 -10.10449 -9.72088 -9.54541 -9.45227 -8.66435 -8.19793 -7.92087 -7.67412 -7.11735 -4.77242 1.29361 1.50981 2.29140 2.62472 2.88670 2.90740 2.94883 2.96216 3.61339 3.68037 3.86323 4.27687 4.65506 4.71539 4.91817 4.98333 5.07131 5.08902 5.20632 5.39771 5.41681 5.49856 5.60833 5.73032 5.74898 5.80847 5.91280 6.07674 6.11641 6.13776 6.27714 6.40073 6.69382 6.71787 6.86140 7.05144 7.09416 7.36962 7.45787 7.66397 7.79585 7.99717 8.34447 8.53982 8.68022 9.79856 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.003098 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.833066 B = 9034.540845 C = 9267.572818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.109 0.891 4 C -0.461 4.461 5 S 1.246 4.754 6 C -0.498 4.498 7 O -0.831 6.831 8 N -1.002 6.002 9 C 0.095 3.905 10 S 2.698 3.302 11 O -0.982 6.982 12 O -0.974 6.974 13 C -0.791 4.791 14 C 0.001 3.999 15 C -0.239 4.239 16 C 0.139 3.861 17 C -0.437 4.437 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.916 3.084 22 H -0.257 1.257 23 H -0.268 1.268 24 H -0.270 1.270 25 C -0.183 4.183 26 C -0.016 4.016 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.289 0.711 41 H 0.123 0.877 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -4.420 15.831 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.126 0.874 4 C -0.599 4.599 5 S 1.443 4.557 6 C -0.655 4.655 7 O -0.826 6.826 8 N -0.837 5.837 9 C -0.051 4.051 10 S 2.797 3.203 11 O -0.973 6.973 12 O -0.965 6.965 13 C -0.886 4.886 14 C -0.019 4.019 15 C -0.260 4.260 16 C 0.136 3.864 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.388 5.388 21 Si 0.739 3.261 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.204 4.204 26 C -0.036 4.036 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.537 -3.765 15.295 15.760 hybrid contribution -1.981 -1.649 -0.708 2.673 sum -1.444 -5.414 14.587 15.626 Atomic orbital electron populations 1.22134 0.94169 1.02455 1.02842 1.20349 0.95324 0.96177 0.82110 0.87358 1.28130 1.21239 1.06559 1.03976 1.71097 0.85496 1.13802 0.85349 1.27742 1.08432 1.10656 1.18620 1.93196 1.69837 1.75542 1.44065 1.57776 1.70129 1.20664 1.35139 1.21343 1.01040 0.81324 1.01369 1.01259 0.73611 0.72540 0.72883 1.93418 1.74556 1.55729 1.73593 1.93451 1.69007 1.60289 1.73715 1.29384 1.33538 1.08418 1.17305 1.20164 0.93270 0.96554 0.91919 1.21020 1.05584 0.98661 1.00691 1.17850 0.87272 0.90625 0.90673 1.19949 1.19863 0.91498 1.15112 0.89488 1.26136 0.96557 0.97741 0.94563 1.69835 1.28946 1.07381 1.32591 0.86117 0.80882 0.79578 0.79478 1.18042 1.19245 1.19533 1.21336 1.03185 1.01164 0.94673 1.20246 0.93894 0.91848 0.97599 0.92452 0.91658 0.91066 0.85711 0.89061 0.90544 0.87938 0.87313 0.93010 0.92193 0.90096 0.87995 0.88249 0.90019 0.85955 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.19 37.16 0.34 -1.41 16 2 C 0.17 2.15 2.63 -67.94 -0.18 1.97 16 3 H 0.11 1.36 6.91 -51.93 -0.36 1.00 16 4 C -0.46 -4.37 5.33 37.15 0.20 -4.17 16 5 S 1.25 13.59 13.73 -107.50 -1.48 12.11 16 6 C -0.50 -3.89 10.74 101.05 1.09 -2.81 16 7 O -0.83 -14.93 16.69 -35.23 -0.59 -15.52 16 8 N -1.00 -16.63 2.06 -114.61 -0.24 -16.87 16 9 C 0.09 1.42 9.72 59.85 0.58 2.00 16 10 S 2.70 57.45 5.13 -107.50 -0.55 56.90 16 11 O -0.98 -21.25 15.82 -57.17 -0.90 -22.16 16 12 O -0.97 -23.65 15.85 -57.17 -0.91 -24.56 16 13 C -0.79 -18.22 6.00 -39.29 -0.24 -18.45 16 14 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 15 C -0.24 -5.81 9.80 -38.87 -0.38 -6.19 16 16 C 0.14 3.57 5.58 -106.82 -0.60 2.97 16 17 C -0.44 -10.78 9.05 -37.74 -0.34 -11.13 16 18 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 19 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 20 N -0.77 -18.36 10.95 55.55 0.61 -17.75 16 21 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 C -0.18 -4.58 8.70 -38.87 -0.34 -4.92 16 26 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 27 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.88 6.48 -51.92 -0.34 0.54 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.74 6.34 -51.93 -0.33 0.41 16 37 H 0.08 1.35 7.02 -51.93 -0.36 0.98 16 38 H 0.10 2.21 7.59 -52.49 -0.40 1.81 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.29 6.16 8.30 -40.82 -0.34 5.83 16 41 H 0.12 3.07 6.15 -52.49 -0.32 2.74 16 42 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -34.63 369.01 -10.07 -44.69 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.84 Total: 7.25 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: -0.71 Total: -41.63 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.37 Total: -34.62 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -2.40 Total: -62.23 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 16 Polarization: 71.04 SS G_CDS: -2.03 Total: 69.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.63 -10.07 -44.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400000025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.612 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds