Wall clock time and date at job start Wed Apr 1 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46765 * 2 1 4 4 C 1.52990 * 109.47073 * 119.99533 * 2 1 3 5 5 S 1.81402 * 109.47320 * 185.00024 * 4 2 1 6 6 C 1.81397 * 103.00374 * 180.02562 * 5 4 2 7 7 O 1.42094 * 109.47266 * 296.39407 * 5 4 2 8 8 N 1.46498 * 109.47429 * 240.00159 * 2 1 3 9 9 C 1.46506 * 119.99923 * 299.99767 * 8 2 1 10 10 S 1.65594 * 120.00572 * 119.99777 * 8 2 1 11 11 O 1.42106 * 106.40038 * 23.53814 * 10 8 2 12 12 O 1.42094 * 106.40667 * 156.46043 * 10 8 2 13 13 C 1.76202 * 107.21901 * 270.00290 * 10 8 2 14 14 C 1.38635 * 119.74671 * 269.72893 * 13 10 8 15 15 C 1.37618 * 120.24841 * 179.72404 * 14 13 10 16 16 C 1.40718 * 119.74549 * 0.56045 * 15 14 13 17 17 C 1.41391 * 120.24480 * 179.68324 * 16 15 14 18 18 H 1.07999 * 119.99822 * 24.41264 * 17 16 15 19 19 C 1.39947 * 120.00039 * 204.40180 * 17 16 15 20 20 N 1.30827 * 119.99869 * 17.87671 * 19 17 16 21 21 Si 1.86793 * 120.00265 * 197.86938 * 19 17 16 22 22 H 1.48504 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47432 * 120.00361 * 21 19 17 24 24 H 1.48500 * 109.47135 * 240.00620 * 21 19 17 25 25 C 1.40719 * 119.50788 * 359.71273 * 16 15 14 26 26 C 1.37616 * 119.74561 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46765 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47624 * 300.00281 * 1 2 3 29 29 H 1.09003 * 109.47376 * 60.00523 * 1 2 3 30 30 H 1.08995 * 109.47473 * 305.00341 * 4 2 1 31 31 H 1.09002 * 109.47403 * 65.00343 * 4 2 1 32 32 H 1.09001 * 109.46648 * 60.00304 * 6 5 4 33 33 H 1.08997 * 109.47013 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47177 * 300.00017 * 6 5 4 35 35 H 1.09003 * 109.47365 * 89.99525 * 9 8 2 36 36 H 1.09004 * 109.46590 * 330.00300 * 9 8 2 37 37 H 1.08991 * 109.47334 * 210.00450 * 9 8 2 38 38 H 1.08001 * 119.87723 * 359.96683 * 14 13 10 39 39 H 1.08001 * 120.12797 * 180.27364 * 15 14 13 40 40 H 0.96996 * 119.99956 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.12457 * 179.97438 * 25 16 15 42 42 H 1.08001 * 119.87709 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 16 3.8478 -0.5931 1.3257 6 6 4.2567 -1.4927 2.8469 7 8 4.4178 -1.2650 0.2109 8 7 2.0184 -0.6906 -1.1961 9 6 1.6646 -2.0932 -1.4280 10 16 2.9704 0.1141 -2.2862 11 8 3.5794 1.1830 -1.5748 12 8 3.7119 -0.8789 -2.9814 13 6 1.8961 0.8535 -3.4711 14 6 1.5449 0.1513 -4.6137 15 6 0.7020 0.7166 -5.5432 16 6 0.2057 2.0169 -5.3360 17 6 -0.6556 2.6105 -6.2873 18 1 -1.2452 1.9883 -6.9442 19 6 -0.7443 4.0042 -6.3774 20 7 0.1916 4.7544 -5.8549 21 14 -2.1987 4.7935 -7.2439 22 1 -3.1114 3.7342 -7.7439 23 1 -2.9293 5.6661 -6.2900 24 1 -1.7118 5.6078 -8.3864 25 6 0.5735 2.7224 -4.1752 26 6 1.4125 2.1348 -3.2562 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6053 -0.2616 2.1369 31 1 1.7517 -1.7714 1.2057 32 1 3.9130 -2.5237 2.7628 33 1 5.3362 -1.4804 2.9972 34 1 3.7667 -1.0142 3.6948 35 1 0.7377 -2.1445 -1.9993 36 1 1.5296 -2.5968 -0.4707 37 1 2.4630 -2.5819 -1.9862 38 1 1.9311 -0.8446 -4.7732 39 1 0.4262 0.1661 -6.4305 40 1 0.1303 5.7203 -5.9177 41 1 0.1988 3.7211 -4.0064 42 1 1.6958 2.6742 -2.3644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400000025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:24 Heat of formation + Delta-G solvation = -117.079433 kcal Electronic energy + Delta-G solvation = -26842.506119 eV Core-core repulsion = 23040.131755 eV Total energy + Delta-G solvation = -3802.374365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.39308 -38.54238 -38.11311 -36.73103 -36.59954 -35.80987 -32.54955 -32.07666 -31.30738 -29.78252 -28.16732 -27.61877 -27.34592 -23.30418 -22.98887 -22.06208 -19.85948 -19.44183 -18.91723 -18.38592 -18.19234 -17.26937 -17.02014 -16.22350 -15.91294 -15.90740 -15.77305 -15.29640 -15.08285 -14.95282 -14.72851 -14.16918 -14.10022 -13.99400 -13.78746 -13.60705 -13.55947 -13.51600 -13.19550 -13.03448 -12.96576 -12.90150 -12.86093 -12.82121 -12.58552 -12.47073 -12.25996 -11.98402 -11.82376 -11.55911 -11.36772 -11.21015 -10.97223 -9.97170 -9.76972 -9.57017 -9.05375 -8.87080 -6.65252 -0.33984 0.47446 0.71288 1.03540 1.36866 1.42568 1.54405 1.87550 2.12151 2.17827 2.53039 2.94569 3.10317 3.48957 3.51256 3.72046 4.07975 4.13117 4.27365 4.30119 4.34080 4.38762 4.49773 4.57335 4.65264 4.79387 4.83519 4.84622 4.91835 4.94356 4.98960 5.10052 5.16626 5.23310 5.30936 5.44405 5.51084 5.57466 5.71602 5.81072 5.92557 6.14192 6.47914 6.67520 6.80104 8.08603 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.003098 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.833066 B = 9034.540845 C = 9267.572818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.108 0.892 4 C -0.445 4.445 5 S 1.237 4.763 6 C -0.479 4.479 7 O -0.912 6.912 8 N -0.996 5.996 9 C 0.090 3.910 10 S 2.714 3.286 11 O -0.990 6.990 12 O -1.010 7.010 13 C -0.802 4.802 14 C -0.008 4.008 15 C -0.257 4.257 16 C 0.111 3.889 17 C -0.464 4.464 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.796 5.796 21 Si 0.994 3.006 22 H -0.254 1.254 23 H -0.257 1.257 24 H -0.264 1.264 25 C -0.203 4.203 26 C -0.017 4.017 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.300 0.700 41 H 0.116 0.884 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 -4.145 18.388 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.126 0.874 4 C -0.585 4.585 5 S 1.438 4.562 6 C -0.638 4.638 7 O -0.908 6.908 8 N -0.835 5.835 9 C -0.055 4.055 10 S 2.811 3.189 11 O -0.981 6.981 12 O -1.001 7.001 13 C -0.895 4.895 14 C -0.028 4.028 15 C -0.277 4.277 16 C 0.108 3.892 17 C -0.491 4.491 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.419 5.419 21 Si 0.813 3.187 22 H -0.178 1.178 23 H -0.182 1.182 24 H -0.188 1.188 25 C -0.223 4.223 26 C -0.037 4.037 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.196 0.804 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.168 0.832 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.285 -3.469 17.817 18.197 hybrid contribution -1.382 -1.787 -1.286 2.600 sum -2.667 -5.256 16.531 17.550 Atomic orbital electron populations 1.22123 0.92560 1.03193 1.03303 1.20827 0.96654 0.96433 0.81765 0.87374 1.28009 1.19141 1.07024 1.04305 1.70109 0.86356 1.14463 0.85235 1.27553 1.09105 1.10051 1.17066 1.93115 1.72461 1.77467 1.47754 1.57438 1.69861 1.20984 1.35195 1.21482 1.00542 0.80415 1.03051 1.00641 0.73439 0.72073 0.72735 1.93388 1.74999 1.56331 1.73362 1.93399 1.70374 1.61150 1.75127 1.29791 1.33006 1.08575 1.18139 1.20385 0.93155 0.97171 0.92051 1.21228 1.06226 0.98780 1.01450 1.18202 0.88153 0.91393 0.91461 1.20241 1.20413 0.92846 1.15574 0.89097 1.27047 0.99021 0.97525 0.94953 1.69860 1.30508 1.08320 1.33214 0.84975 0.76895 0.78474 0.78363 1.17761 1.18167 1.18813 1.21373 1.04503 1.01183 0.95289 1.20471 0.93243 0.92051 0.97897 0.91575 0.88125 0.93701 0.80367 0.88556 0.91137 0.87762 0.83164 0.91844 0.89033 0.92489 0.86912 0.87255 0.88896 0.86581 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.19 71.98 0.66 -2.30 16 2 C 0.15 3.49 2.63 44.99 0.12 3.61 16 3 H 0.11 2.53 6.91 -2.39 -0.02 2.51 16 4 C -0.45 -6.76 5.33 71.98 0.38 -6.37 16 5 S 1.24 24.87 13.73 -56.49 -0.78 24.10 16 6 C -0.48 -5.85 10.74 113.37 1.22 -4.64 16 7 O -0.91 -33.22 16.69 -148.98 -2.49 -35.71 16 8 N -1.00 -32.52 2.06 -516.52 -1.06 -33.59 16 9 C 0.09 2.64 9.72 127.77 1.24 3.88 16 10 S 2.71 117.86 5.13 -56.49 -0.29 117.57 16 11 O -0.99 -43.46 15.82 -128.00 -2.03 -45.48 16 12 O -1.01 -50.85 15.85 -128.00 -2.03 -52.88 16 13 C -0.80 -37.88 6.00 22.46 0.13 -37.74 16 14 C -0.01 -0.38 9.49 22.22 0.21 -0.17 16 15 C -0.26 -12.90 9.80 22.73 0.22 -12.67 16 16 C 0.11 5.89 5.58 -21.29 -0.12 5.77 16 17 C -0.46 -23.40 9.05 23.46 0.21 -23.19 16 18 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 19 C 0.03 1.58 5.14 85.26 0.44 2.02 16 20 N -0.80 -38.62 10.95 21.83 0.24 -38.38 16 21 Si 0.99 34.31 29.59 68.60 2.03 36.34 16 22 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 24 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 25 C -0.20 -10.49 8.70 22.73 0.20 -10.29 16 26 C -0.02 -0.80 9.49 22.22 0.21 -0.58 16 27 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.18 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 1.44 6.48 -2.39 -0.02 1.43 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 2.06 6.34 -2.38 -0.02 2.05 16 37 H 0.06 1.95 7.02 -2.39 -0.02 1.93 16 38 H 0.11 5.07 7.59 -2.91 -0.02 5.05 16 39 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 40 H 0.30 12.80 8.30 -92.71 -0.77 12.03 16 41 H 0.12 6.01 6.15 -2.91 -0.02 6.00 16 42 H 0.12 5.20 7.60 -2.91 -0.02 5.18 16 Total: -1.00 -79.75 369.01 -0.24 -80.00 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.02 Total: 30.70 kcal Atomic # 6 Polarization: -87.80 SS G_CDS: 5.13 Total: -82.67 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.82 Total: -71.97 kcal Atomic # 8 Polarization: -127.53 SS G_CDS: -6.54 Total: -134.07 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Atomic # 16 Polarization: 142.74 SS G_CDS: -1.07 Total: 141.67 kcal Total: -79.75 -0.24 -80.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400000025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.082 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds