Wall clock time and date at job start Wed Apr 1 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47475 * 2 1 4 4 C 1.52996 * 109.47507 * 239.99865 * 2 1 3 5 5 S 1.81393 * 109.47622 * 180.02562 * 4 2 1 6 6 C 1.81400 * 103.00380 * 179.97438 * 5 4 2 7 7 O 1.42105 * 109.46716 * 296.38718 * 5 4 2 8 8 N 1.46505 * 109.46974 * 119.99720 * 2 1 3 9 9 C 1.46498 * 119.99783 * 60.00022 * 8 2 1 10 10 S 1.65601 * 119.99982 * 240.00183 * 8 2 1 11 11 O 1.42098 * 106.39741 * 203.54038 * 10 8 2 12 12 O 1.42104 * 106.40188 * 336.45588 * 10 8 2 13 13 C 1.76200 * 107.21777 * 89.99934 * 10 8 2 14 14 C 1.38630 * 119.74682 * 269.72477 * 13 10 8 15 15 C 1.37622 * 120.24650 * 179.72230 * 14 13 10 16 16 C 1.40719 * 119.74375 * 0.57156 * 15 14 13 17 17 C 1.41391 * 120.24561 * 179.67807 * 16 15 14 18 18 H 1.07997 * 119.99724 * 155.31132 * 17 16 15 19 19 C 1.39945 * 120.00147 * 335.31478 * 17 16 15 20 20 N 1.30824 * 120.00018 * 342.23541 * 19 17 16 21 21 Si 1.86804 * 119.99955 * 162.22709 * 19 17 16 22 22 H 1.48505 * 109.46728 * 94.66866 * 21 19 17 23 23 H 1.48495 * 109.47104 * 214.66462 * 21 19 17 24 24 H 1.48494 * 109.47149 * 334.66730 * 21 19 17 25 25 C 1.40716 * 119.51073 * 359.70526 * 16 15 14 26 26 C 1.37624 * 119.74418 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47043 * 300.00684 * 1 2 3 29 29 H 1.08995 * 109.46616 * 60.00212 * 1 2 3 30 30 H 1.09006 * 109.47464 * 59.99880 * 4 2 1 31 31 H 1.09001 * 109.46863 * 300.00509 * 4 2 1 32 32 H 1.09007 * 109.46892 * 59.99808 * 6 5 4 33 33 H 1.09002 * 109.47102 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47201 * 299.99858 * 6 5 4 35 35 H 1.09002 * 109.47072 * 90.00307 * 9 8 2 36 36 H 1.09001 * 109.46835 * 209.99701 * 9 8 2 37 37 H 1.08997 * 109.47101 * 330.00241 * 9 8 2 38 38 H 1.07997 * 119.88045 * 359.97438 * 14 13 10 39 39 H 1.08003 * 120.12922 * 180.27902 * 15 14 13 40 40 H 0.97001 * 120.00028 * 179.97438 * 20 19 17 41 41 H 1.07997 * 120.12977 * 179.97438 * 25 16 15 42 42 H 1.08001 * 119.87512 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 3.8540 -0.7219 -1.2488 6 6 4.2622 -1.6063 -2.7791 7 8 4.3281 0.6151 -1.3330 8 7 2.0183 -0.6906 1.1963 9 6 1.6644 -2.0931 1.4281 10 16 2.9704 0.1143 2.2863 11 8 3.7117 -0.8788 2.9815 12 8 3.5795 1.1830 1.5748 13 6 1.8960 0.8536 3.4711 14 6 1.4174 2.1373 3.2589 15 6 0.5731 2.7225 4.1747 16 6 0.2056 2.0174 5.3357 17 6 -0.6557 2.6111 6.2869 18 1 -1.2488 1.9889 6.9408 19 6 -0.7398 4.0048 6.3811 20 7 0.1987 4.7533 5.8609 21 14 -2.1921 4.7964 7.2493 22 1 -1.8337 5.0700 8.6642 23 1 -2.5393 6.0711 6.5712 24 1 -3.3575 3.8775 7.2026 25 6 0.7022 0.7172 5.5433 26 6 1.5399 0.1492 4.6108 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.6768 -0.2075 -2.1393 31 1 1.6767 -1.7489 -1.2492 32 1 3.8436 -1.0704 -3.6311 33 1 5.3453 -1.6677 -2.8855 34 1 3.8429 -2.6117 -2.7406 35 1 2.4157 -2.7377 0.9718 36 1 1.6238 -2.2851 2.5003 37 1 0.6904 -2.3001 0.9847 38 1 1.7049 2.6786 2.3697 39 1 0.1978 3.7210 4.0054 40 1 0.1402 5.7194 5.9259 41 1 0.4269 0.1671 6.4310 42 1 1.9219 -0.8487 4.7678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400000030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:27 Heat of formation + Delta-G solvation = -116.443911 kcal Electronic energy + Delta-G solvation = -26703.136809 eV Core-core repulsion = 22900.790003 eV Total energy + Delta-G solvation = -3802.346806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.37932 -38.52927 -38.10584 -36.74886 -36.69060 -35.80557 -32.55122 -32.06928 -31.29408 -29.82937 -28.23412 -27.60911 -27.15645 -23.27922 -22.99621 -22.11124 -19.79800 -19.43261 -18.82943 -18.46592 -18.20733 -17.25877 -17.00832 -16.28773 -16.05247 -15.87168 -15.80888 -15.19076 -15.04885 -14.91841 -14.66226 -14.33590 -14.10133 -14.01033 -13.73765 -13.56371 -13.50005 -13.40834 -13.20861 -13.03668 -12.98721 -12.96431 -12.85426 -12.77402 -12.55377 -12.53318 -12.21166 -12.02827 -11.77859 -11.55205 -11.33073 -11.20449 -11.03779 -9.97871 -9.75125 -9.55310 -9.14404 -8.87349 -6.64836 -0.33821 0.48906 0.60050 1.05212 1.34795 1.41328 1.52436 1.79522 2.09982 2.17598 2.52965 2.87989 2.96434 3.49728 3.53547 3.71429 4.04074 4.08983 4.27540 4.29719 4.33428 4.38420 4.50732 4.59678 4.83466 4.86476 4.89209 4.91049 4.96155 4.97386 5.09986 5.12287 5.20850 5.24043 5.27344 5.45712 5.51937 5.59525 5.72770 5.82809 5.93837 6.15186 6.49065 6.68074 6.81302 8.07904 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.003080 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.100566 B = 9087.278707 C = 9248.297064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.435 4.435 5 S 1.208 4.792 6 C -0.477 4.477 7 O -0.910 6.910 8 N -0.997 5.997 9 C 0.068 3.932 10 S 2.696 3.304 11 O -0.984 6.984 12 O -0.998 6.998 13 C -0.798 4.798 14 C -0.023 4.023 15 C -0.207 4.207 16 C 0.112 3.888 17 C -0.466 4.466 18 H 0.096 0.904 19 C 0.032 3.968 20 N -0.803 5.803 21 Si 0.993 3.007 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.250 1.250 25 C -0.254 4.254 26 C 0.000 4.000 27 H 0.096 0.904 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.297 0.703 41 H 0.116 0.884 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 -15.851 -12.100 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.082 0.918 4 C -0.576 4.576 5 S 1.410 4.590 6 C -0.636 4.636 7 O -0.906 6.906 8 N -0.836 5.836 9 C -0.075 4.075 10 S 2.793 3.207 11 O -0.974 6.974 12 O -0.989 6.989 13 C -0.890 4.890 14 C -0.043 4.043 15 C -0.227 4.227 16 C 0.108 3.892 17 C -0.492 4.492 18 H 0.114 0.886 19 C -0.187 4.187 20 N -0.426 5.426 21 Si 0.812 3.188 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.174 1.174 25 C -0.274 4.274 26 C -0.020 4.020 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.192 0.808 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.173 0.827 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.854 -15.181 -11.507 19.069 hybrid contribution -1.639 2.440 -0.944 3.088 sum -2.493 -12.741 -12.451 17.988 Atomic orbital electron populations 1.22123 0.92389 1.04546 1.02220 1.20431 0.96578 0.94916 0.82666 0.91777 1.27837 1.18230 1.10145 1.01344 1.69868 0.88620 0.96910 1.03570 1.27558 1.09072 1.12103 1.14916 1.93169 1.75299 1.38032 1.84091 1.57594 1.69829 1.22380 1.33817 1.22001 1.04320 0.78168 1.03052 1.01285 0.73968 0.72546 0.72943 1.93462 1.69380 1.60138 1.74430 1.93564 1.75197 1.56844 1.73246 1.29768 1.32691 1.07825 1.18707 1.20366 0.93731 0.92896 0.97322 1.21319 1.04629 1.01027 0.95752 1.18193 0.88150 0.91822 0.90991 1.20236 1.20539 0.92687 1.15784 0.88642 1.27089 0.98940 0.97776 0.94920 1.69884 1.30814 1.08237 1.33641 0.85023 0.77297 0.77986 0.78510 1.18307 1.19023 1.17351 1.21288 1.06189 0.98282 1.01670 1.20491 0.92601 0.97648 0.91212 0.88518 0.93693 0.90691 0.87655 0.80837 0.90723 0.87455 0.82713 0.88473 0.91378 0.87630 0.88037 0.87599 0.89180 0.86623 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.17 71.98 0.66 -2.44 16 2 C 0.16 4.00 2.68 44.99 0.12 4.12 16 3 H 0.06 2.14 6.91 -2.39 -0.02 2.13 16 4 C -0.44 -7.21 5.29 71.98 0.38 -6.83 16 5 S 1.21 27.11 13.38 -56.49 -0.76 26.35 16 6 C -0.48 -6.22 10.74 113.37 1.22 -5.01 16 7 O -0.91 -36.31 18.14 -148.98 -2.70 -39.02 16 8 N -1.00 -26.17 2.61 -516.51 -1.35 -27.52 16 9 C 0.07 1.09 9.35 127.77 1.19 2.28 16 10 S 2.70 104.28 5.64 -56.49 -0.32 103.96 16 11 O -0.98 -38.67 16.33 -128.00 -2.09 -40.76 16 12 O -1.00 -46.31 15.82 -128.00 -2.02 -48.33 16 13 C -0.80 -35.86 6.00 22.46 0.13 -35.72 16 14 C -0.02 -1.15 9.49 22.22 0.21 -0.93 16 15 C -0.21 -11.00 8.70 22.73 0.20 -10.80 16 16 C 0.11 5.86 5.57 -21.29 -0.12 5.75 16 17 C -0.47 -23.40 9.05 23.46 0.21 -23.19 16 18 H 0.10 4.45 7.91 -2.91 -0.02 4.43 16 19 C 0.03 1.49 5.14 85.26 0.44 1.93 16 20 N -0.80 -40.43 10.97 21.83 0.24 -40.19 16 21 Si 0.99 35.02 29.60 68.60 2.03 37.05 16 22 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 23 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 24 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 25 C -0.25 -12.04 9.80 22.73 0.22 -11.82 16 26 C 0.00 0.01 9.49 22.22 0.21 0.22 16 27 H 0.10 1.29 6.66 -2.39 -0.02 1.28 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.17 1.03 7.67 -2.39 -0.02 1.01 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.23 7.79 -2.39 -0.02 1.22 16 37 H 0.11 1.00 6.43 -2.39 -0.02 0.99 16 38 H 0.10 4.88 7.59 -2.91 -0.02 4.86 16 39 H 0.11 5.81 6.18 -2.91 -0.02 5.79 16 40 H 0.30 13.38 8.30 -92.71 -0.77 12.61 16 41 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.13 4.93 7.60 -2.91 -0.02 4.91 16 Total: -1.00 -82.07 372.35 -0.86 -82.93 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 1.02 Total: 27.97 kcal Atomic # 6 Polarization: -87.53 SS G_CDS: 5.08 Total: -82.45 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.11 Total: -67.71 kcal Atomic # 8 Polarization: -121.30 SS G_CDS: -6.82 Total: -128.12 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: 131.39 SS G_CDS: -1.07 Total: 130.32 kcal Total: -82.07 -0.86 -82.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400000030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.510 kcal (2) G-P(sol) polarization free energy of solvation -82.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds