Wall clock time and date at job start Wed Apr 1 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00563 * 2 1 4 4 C 1.52999 * 109.47551 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47005 * 64.99495 * 4 3 2 6 6 C 1.37090 * 119.99948 * 270.00221 * 5 4 3 7 7 H 1.07999 * 119.99824 * 145.16517 * 6 5 4 8 8 C 1.38959 * 120.00236 * 325.16008 * 6 5 4 9 9 N 1.31408 * 119.99720 * 337.41153 * 8 6 5 10 10 Si 1.86792 * 120.00026 * 157.41298 * 8 6 5 11 11 H 1.48507 * 109.47445 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47372 * 119.99935 * 10 8 6 13 13 H 1.48506 * 109.47199 * 240.00219 * 10 8 6 14 14 C 1.34770 * 119.99720 * 90.00219 * 5 4 3 15 15 O 1.21293 * 120.00373 * 4.90382 * 14 5 4 16 16 C 1.50699 * 120.00243 * 184.89428 * 14 5 4 17 17 C 1.52994 * 109.47676 * 177.67353 * 16 14 5 18 18 O 1.42895 * 109.47328 * 180.02562 * 17 16 14 19 19 C 1.35978 * 117.00020 * 180.02562 * 18 17 16 20 20 C 1.38684 * 120.03414 * 0.24873 * 19 18 17 21 21 C 1.38148 * 119.97986 * 180.25644 * 20 19 18 22 22 C 1.38467 * 120.05467 * 359.49428 * 21 20 19 23 23 F 1.35100 * 119.96869 * 180.27356 * 22 21 20 24 24 C 1.38438 * 120.06779 * 0.25152 * 22 21 20 25 25 C 1.38264 * 120.01249 * 0.02562 * 24 22 21 26 26 Cl 1.73595 * 120.02123 * 180.02562 * 25 24 22 27 27 H 1.08993 * 109.47000 * 59.99722 * 1 2 3 28 28 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46661 * 300.00261 * 1 2 3 30 30 H 1.09000 * 109.47259 * 59.99471 * 3 2 1 31 31 H 1.09009 * 109.46844 * 299.99987 * 3 2 1 32 32 H 1.09001 * 109.46964 * 304.99798 * 4 3 2 33 33 H 1.08994 * 109.47321 * 185.00128 * 4 3 2 34 34 H 0.97001 * 119.99858 * 184.98730 * 9 8 6 35 35 H 1.09004 * 109.46785 * 57.67031 * 16 14 5 36 36 H 1.08998 * 109.47401 * 297.67768 * 16 14 5 37 37 H 1.09004 * 109.47276 * 59.99979 * 17 16 14 38 38 H 1.09007 * 109.47010 * 300.00358 * 17 16 14 39 39 H 1.08000 * 120.00863 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.97541 * 179.76815 * 21 20 19 41 41 H 1.08000 * 119.99060 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0968 -0.7988 -1.3369 7 1 3.8636 -1.3055 -2.2616 8 6 4.5198 -1.5283 -0.2324 9 7 5.2124 -0.9405 0.7171 10 14 4.1039 -3.3443 -0.0975 11 1 3.3210 -3.7627 -1.2881 12 1 5.3586 -4.1356 -0.0265 13 1 3.3009 -3.5784 1.1295 14 6 4.2615 1.3334 -2.3218 15 8 4.2407 2.5421 -2.2223 16 6 4.6074 0.6920 -3.6409 17 6 4.8298 1.7792 -4.6940 18 8 5.1571 1.1708 -5.9449 19 6 5.3878 2.0036 -6.9948 20 6 5.3057 3.3773 -6.8223 21 6 5.5350 4.2222 -7.8909 22 6 5.8571 3.6991 -9.1319 23 9 6.0864 4.5271 -10.1744 24 6 5.9448 2.3284 -9.3052 25 6 5.7102 1.4800 -8.2390 26 17 5.8207 -0.2388 -8.4560 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8515 0.5681 0.8410 33 1 3.9787 2.1763 0.0889 34 1 5.5695 -1.4637 1.4517 35 1 3.7894 0.0436 -3.9551 36 1 5.5169 0.1016 -3.5305 37 1 5.6478 2.4275 -4.3798 38 1 3.9202 2.3696 -4.8045 39 1 5.0589 3.7862 -5.8536 40 1 5.4674 5.2918 -7.7573 41 1 6.1957 1.9217 -10.2738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457178874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:57 Heat of formation + Delta-G solvation = -137.061498 kcal Electronic energy + Delta-G solvation = -27458.340489 eV Core-core repulsion = 23086.842755 eV Total energy + Delta-G solvation = -4371.497734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.05257 -40.26691 -38.81265 -37.51220 -36.95954 -36.45854 -34.79284 -31.76402 -31.62543 -31.20792 -29.56609 -28.77655 -25.89736 -25.01679 -24.37704 -23.04253 -22.34015 -21.24226 -19.12984 -18.58458 -17.63444 -17.07535 -16.65958 -16.24110 -16.13009 -15.71007 -15.39556 -15.37495 -15.08166 -14.65251 -14.44514 -14.39378 -14.12892 -14.04796 -13.78912 -13.53215 -13.06170 -12.72133 -12.62070 -12.03893 -11.95912 -11.69092 -11.53471 -11.30526 -11.20026 -11.11336 -11.04335 -11.00303 -10.88220 -10.62958 -10.39998 -10.32900 -10.06690 -9.26140 -9.22192 -9.01743 -8.56855 -8.22670 -7.56242 -6.37595 -4.01329 0.74602 0.92169 1.96216 3.02538 3.14587 3.21067 3.27046 3.31089 3.76951 4.06548 4.14334 4.42266 4.47871 4.58691 4.72905 4.84775 5.03153 5.11892 5.29221 5.36521 5.38833 5.62538 5.63083 5.68360 5.70897 5.85223 5.86683 5.92293 5.96093 6.02008 6.22927 6.26843 6.34905 6.40310 6.49155 6.67968 7.23933 7.26361 7.48718 7.76161 7.94727 8.33227 9.06737 9.42596 9.84259 10.65403 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.002622 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.614728 B =10674.992557 C =11696.185287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.421 5.421 6 C -0.330 4.330 7 H 0.091 0.909 8 C 0.054 3.946 9 N -0.862 5.862 10 Si 0.918 3.082 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.279 1.279 14 C 0.469 3.531 15 O -0.617 6.617 16 C -0.116 4.116 17 C 0.074 3.926 18 O -0.300 6.300 19 C 0.145 3.855 20 C -0.171 4.171 21 C -0.105 4.105 22 C 0.062 3.938 23 F -0.138 7.138 24 C -0.109 4.109 25 C -0.050 4.050 26 Cl -0.044 7.044 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.270 0.730 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 4.985 -12.566 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.138 5.138 6 C -0.458 4.458 7 H 0.108 0.892 8 C -0.152 4.152 9 N -0.499 5.499 10 Si 0.745 3.255 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.205 1.205 14 C 0.258 3.742 15 O -0.505 6.505 16 C -0.156 4.156 17 C 0.000 4.000 18 O -0.212 6.212 19 C 0.097 3.903 20 C -0.189 4.189 21 C -0.124 4.124 22 C 0.043 3.957 23 F -0.117 7.117 24 C -0.128 4.128 25 C -0.078 4.078 26 Cl -0.015 7.015 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.722 4.990 -12.287 13.373 hybrid contribution -0.468 -0.565 0.087 0.739 sum -2.190 4.425 -12.200 13.162 Atomic orbital electron populations 1.22650 0.83488 1.01770 0.98800 1.88160 1.17287 1.27563 1.95003 1.23012 0.96426 0.84412 0.98470 1.21563 0.89352 0.99348 0.91351 1.43299 1.55123 1.06401 1.08961 1.19365 1.45971 0.80421 1.00014 0.89181 1.25224 0.94133 1.00025 0.95855 1.69817 1.30312 1.36929 1.12825 0.86034 0.78220 0.82511 0.78770 1.19199 1.21113 1.20509 1.19958 0.81157 0.86585 0.86536 1.90521 1.59493 1.14532 1.85989 1.21182 1.04797 0.97763 0.91862 1.22727 1.01003 0.96487 0.79813 1.86156 1.82922 1.34404 1.17751 1.18745 0.94792 0.89327 0.87424 1.21264 1.05396 0.91315 1.00974 1.21052 0.99183 1.01333 0.90821 1.17276 1.06288 0.87221 0.84953 1.91501 1.92586 1.71280 1.56300 1.20766 1.01726 0.91109 0.99233 1.19849 1.09136 0.86544 0.92277 1.98388 1.96627 1.09271 1.97175 0.94998 0.90420 0.95184 0.94224 0.94433 0.86348 0.90879 0.92001 0.89189 0.88253 0.90977 0.91345 0.82930 0.83883 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.50 10.18 -35.23 -0.36 -7.86 16 3 C 0.05 1.09 6.28 37.16 0.23 1.33 16 4 C 0.11 2.48 5.47 -4.04 -0.02 2.46 16 5 N -0.42 -10.16 2.52 -114.81 -0.29 -10.45 16 6 C -0.33 -8.14 8.23 -14.93 -0.12 -8.26 16 7 H 0.09 2.15 6.96 -52.49 -0.37 1.79 16 8 C 0.05 1.33 4.95 -17.47 -0.09 1.25 16 9 N -0.86 -22.30 11.34 55.50 0.63 -21.67 16 10 Si 0.92 19.78 29.61 -169.99 -5.03 14.74 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 14 C 0.47 10.66 7.62 -10.99 -0.08 10.58 16 15 O -0.62 -14.89 15.54 5.55 0.09 -14.80 16 16 C -0.12 -2.19 4.70 -27.89 -0.13 -2.32 16 17 C 0.07 1.20 4.03 37.15 0.15 1.35 16 18 O -0.30 -4.62 9.60 -19.67 -0.19 -4.81 16 19 C 0.15 1.97 6.68 -39.21 -0.26 1.70 16 20 C -0.17 -2.01 9.04 -39.45 -0.36 -2.36 16 21 C -0.10 -1.08 10.02 -39.53 -0.40 -1.48 16 22 C 0.06 0.67 7.30 -39.42 -0.29 0.39 16 23 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.11 -1.17 9.80 -39.50 -0.39 -1.56 16 25 C -0.05 -0.63 6.33 -39.37 -0.25 -0.88 16 26 Cl -0.04 -0.55 28.50 -51.86 -1.48 -2.03 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.12 2.96 5.37 -51.93 -0.28 2.68 16 33 H 0.07 1.68 7.36 -51.93 -0.38 1.30 16 34 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 35 H 0.09 1.64 7.68 -51.93 -0.40 1.24 16 36 H 0.10 1.90 8.10 -51.93 -0.42 1.48 16 37 H 0.07 1.16 7.58 -51.93 -0.39 0.76 16 38 H 0.07 1.07 7.65 -51.93 -0.40 0.67 16 39 H 0.15 1.71 6.30 -52.49 -0.33 1.37 16 40 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -28.27 369.47 -6.98 -35.25 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.06 Total: 3.77 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.89 Total: 3.76 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.34 Total: -32.11 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.46 Total: -27.47 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.74 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.27 -6.98 -35.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457178874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.810 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds