Wall clock time and date at job start Wed Apr 1 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00563 * 2 1 4 4 C 1.52999 * 109.47551 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47005 * 64.99495 * 4 3 2 6 6 C 1.37090 * 119.99948 * 270.00221 * 5 4 3 7 7 H 1.07999 * 119.99824 * 145.16517 * 6 5 4 8 8 C 1.38959 * 120.00236 * 325.16008 * 6 5 4 9 9 N 1.31408 * 119.99720 * 337.41153 * 8 6 5 10 10 Si 1.86792 * 120.00026 * 157.41298 * 8 6 5 11 11 H 1.48507 * 109.47445 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47372 * 119.99935 * 10 8 6 13 13 H 1.48506 * 109.47199 * 240.00219 * 10 8 6 14 14 C 1.34770 * 119.99720 * 90.00219 * 5 4 3 15 15 O 1.21293 * 120.00373 * 4.90382 * 14 5 4 16 16 C 1.50699 * 120.00243 * 184.89428 * 14 5 4 17 17 C 1.52994 * 109.47676 * 177.67353 * 16 14 5 18 18 O 1.42895 * 109.47328 * 180.02562 * 17 16 14 19 19 C 1.35978 * 117.00020 * 180.02562 * 18 17 16 20 20 C 1.38684 * 120.03414 * 0.24873 * 19 18 17 21 21 C 1.38148 * 119.97986 * 180.25644 * 20 19 18 22 22 C 1.38467 * 120.05467 * 359.49428 * 21 20 19 23 23 F 1.35100 * 119.96869 * 180.27356 * 22 21 20 24 24 C 1.38438 * 120.06779 * 0.25152 * 22 21 20 25 25 C 1.38264 * 120.01249 * 0.02562 * 24 22 21 26 26 Cl 1.73595 * 120.02123 * 180.02562 * 25 24 22 27 27 H 1.08993 * 109.47000 * 59.99722 * 1 2 3 28 28 H 1.08998 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46661 * 300.00261 * 1 2 3 30 30 H 1.09000 * 109.47259 * 59.99471 * 3 2 1 31 31 H 1.09009 * 109.46844 * 299.99987 * 3 2 1 32 32 H 1.09001 * 109.46964 * 304.99798 * 4 3 2 33 33 H 1.08994 * 109.47321 * 185.00128 * 4 3 2 34 34 H 0.97001 * 119.99858 * 184.98730 * 9 8 6 35 35 H 1.09004 * 109.46785 * 57.67031 * 16 14 5 36 36 H 1.08998 * 109.47401 * 297.67768 * 16 14 5 37 37 H 1.09004 * 109.47276 * 59.99979 * 17 16 14 38 38 H 1.09007 * 109.47010 * 300.00358 * 17 16 14 39 39 H 1.08000 * 120.00863 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.97541 * 179.76815 * 21 20 19 41 41 H 1.08000 * 119.99060 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0968 -0.7988 -1.3369 7 1 3.8636 -1.3055 -2.2616 8 6 4.5198 -1.5283 -0.2324 9 7 5.2124 -0.9405 0.7171 10 14 4.1039 -3.3443 -0.0975 11 1 3.3210 -3.7627 -1.2881 12 1 5.3586 -4.1356 -0.0265 13 1 3.3009 -3.5784 1.1295 14 6 4.2615 1.3334 -2.3218 15 8 4.2407 2.5421 -2.2223 16 6 4.6074 0.6920 -3.6409 17 6 4.8298 1.7792 -4.6940 18 8 5.1571 1.1708 -5.9449 19 6 5.3878 2.0036 -6.9948 20 6 5.3057 3.3773 -6.8223 21 6 5.5350 4.2222 -7.8909 22 6 5.8571 3.6991 -9.1319 23 9 6.0864 4.5271 -10.1744 24 6 5.9448 2.3284 -9.3052 25 6 5.7102 1.4800 -8.2390 26 17 5.8207 -0.2388 -8.4560 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8515 0.5681 0.8410 33 1 3.9787 2.1763 0.0889 34 1 5.5695 -1.4637 1.4517 35 1 3.7894 0.0436 -3.9551 36 1 5.5169 0.1016 -3.5305 37 1 5.6478 2.4275 -4.3798 38 1 3.9202 2.3696 -4.8045 39 1 5.0589 3.7862 -5.8536 40 1 5.4674 5.2918 -7.7573 41 1 6.1957 1.9217 -10.2738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457178874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:56 Heat of formation + Delta-G solvation = -151.869230 kcal Electronic energy + Delta-G solvation = -27458.982601 eV Core-core repulsion = 23086.842755 eV Total energy + Delta-G solvation = -4372.139846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.92048 -41.33509 -40.51799 -38.70181 -38.37135 -37.41096 -36.60380 -33.50580 -33.17294 -32.12906 -30.93586 -30.01788 -27.28471 -26.71789 -25.74787 -24.11484 -23.50206 -22.66010 -20.92377 -19.68322 -18.67023 -18.50423 -17.91485 -17.72279 -17.47351 -17.03986 -16.89656 -16.61061 -16.17289 -16.09567 -15.94265 -15.71499 -15.52152 -15.29116 -14.96230 -14.58464 -14.34753 -14.15191 -13.75494 -13.58418 -13.41978 -13.14090 -12.90117 -12.87237 -12.68084 -12.49809 -12.43454 -12.30427 -12.09752 -12.02606 -11.92438 -11.75823 -11.66983 -11.04789 -10.52186 -10.37474 -10.14507 -9.43732 -9.20834 -8.25314 -5.93667 -0.13292 -0.00382 1.01557 1.42346 1.51951 1.62063 1.85385 1.98553 2.30641 2.38243 3.00196 3.04764 3.18667 3.24519 3.56544 3.70613 3.94237 4.00906 4.02440 4.13330 4.24572 4.27371 4.41464 4.48241 4.54047 4.55999 4.62622 4.65772 4.78002 4.81607 4.86118 4.89889 4.95390 4.96884 5.02292 5.39020 5.51873 5.58736 6.01124 6.15308 6.43874 6.44682 7.18215 7.59348 8.00049 8.78295 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.002622 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.614728 B =10674.992557 C =11696.185287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.105 3.895 5 N -0.435 5.435 6 C -0.338 4.338 7 H 0.095 0.905 8 C 0.015 3.985 9 N -0.892 5.892 10 Si 0.975 3.025 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.461 3.539 15 O -0.634 6.634 16 C -0.108 4.108 17 C 0.089 3.911 18 O -0.312 6.312 19 C 0.121 3.879 20 C -0.172 4.172 21 C -0.097 4.097 22 C 0.063 3.937 23 F -0.136 7.136 24 C -0.103 4.103 25 C -0.059 4.059 26 Cl -0.049 7.049 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.271 0.729 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 5.144 -13.822 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.019 4.019 5 N -0.152 5.152 6 C -0.465 4.465 7 H 0.112 0.888 8 C -0.188 4.188 9 N -0.530 5.530 10 Si 0.800 3.200 11 H -0.184 1.184 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.251 3.749 15 O -0.524 6.524 16 C -0.148 4.148 17 C 0.014 3.986 18 O -0.225 6.225 19 C 0.074 3.926 20 C -0.191 4.191 21 C -0.116 4.116 22 C 0.044 3.956 23 F -0.115 7.115 24 C -0.122 4.122 25 C -0.087 4.087 26 Cl -0.020 7.020 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.174 0.826 40 H 0.187 0.813 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.509 5.154 -13.564 14.726 hybrid contribution -0.226 -0.520 0.407 0.698 sum -2.735 4.634 -13.157 14.215 Atomic orbital electron populations 1.22882 0.80806 1.03242 1.00268 1.88089 1.20270 1.27747 1.95287 1.22807 0.94264 0.84670 0.99466 1.21509 0.91706 0.98138 0.90567 1.43518 1.55562 1.06544 1.09544 1.19573 1.45780 0.80829 1.00328 0.88787 1.25912 0.93874 1.03434 0.95540 1.69911 1.31388 1.38253 1.13451 0.85157 0.77899 0.78372 0.78560 1.18442 1.20796 1.20898 1.20560 0.80373 0.86492 0.87505 1.90494 1.60066 1.15302 1.86510 1.21054 1.04574 0.98356 0.90795 1.22428 1.01182 0.95171 0.79823 1.86099 1.83663 1.34991 1.17763 1.18988 0.96399 0.89988 0.87196 1.21342 1.05341 0.90740 1.01654 1.21302 0.97704 1.02507 0.90061 1.17368 1.05867 0.87266 0.85124 1.91512 1.92529 1.71209 1.56265 1.20957 1.00658 0.91008 0.99582 1.19964 1.09744 0.86548 0.92426 1.98383 1.96701 1.09775 1.97165 0.94032 0.89033 0.93121 0.91633 0.94802 0.88400 0.91867 0.91967 0.88601 0.88757 0.91173 0.90867 0.82571 0.81340 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.95 16 2 O -0.39 -16.01 10.18 -148.98 -1.52 -17.52 16 3 C 0.07 2.59 6.28 71.98 0.45 3.04 16 4 C 0.10 4.90 5.47 86.38 0.47 5.37 16 5 N -0.43 -21.22 2.52 -635.54 -1.60 -22.82 16 6 C -0.34 -16.72 8.23 84.04 0.69 -16.02 16 7 H 0.09 4.48 6.96 -2.91 -0.02 4.46 16 8 C 0.02 0.77 4.95 84.93 0.42 1.19 16 9 N -0.89 -46.85 11.34 21.67 0.25 -46.60 16 10 Si 0.97 40.38 29.61 68.60 2.03 42.41 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 12 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 C 0.46 21.14 7.62 87.66 0.67 21.81 16 15 O -0.63 -30.84 15.54 -3.07 -0.05 -30.89 16 16 C -0.11 -4.07 4.70 29.85 0.14 -3.93 16 17 C 0.09 2.83 4.03 71.98 0.29 3.12 16 18 O -0.31 -9.47 9.60 -93.30 -0.90 -10.37 16 19 C 0.12 3.17 6.68 22.51 0.15 3.32 16 20 C -0.17 -3.79 9.04 22.36 0.20 -3.59 16 21 C -0.10 -1.78 10.02 22.30 0.22 -1.56 16 22 C 0.06 1.22 7.30 22.37 0.16 1.39 16 23 F -0.14 -2.65 17.27 44.97 0.78 -1.87 16 24 C -0.10 -2.01 9.80 22.32 0.22 -1.79 16 25 C -0.06 -1.41 6.33 22.41 0.14 -1.27 16 26 Cl -0.05 -1.20 28.50 -2.72 -0.08 -1.27 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.10 5.02 5.37 -2.39 -0.01 5.01 16 33 H 0.06 2.99 7.36 -2.39 -0.02 2.97 16 34 H 0.27 13.46 8.32 -92.71 -0.77 12.69 16 35 H 0.10 3.48 7.68 -2.38 -0.02 3.46 16 36 H 0.09 3.64 8.10 -2.39 -0.02 3.62 16 37 H 0.07 2.24 7.58 -2.38 -0.02 2.22 16 38 H 0.07 2.24 7.65 -2.38 -0.02 2.22 16 39 H 0.16 3.30 6.30 -2.91 -0.02 3.28 16 40 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -60.11 369.47 5.46 -54.64 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.06 Total: 21.25 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.48 Total: 13.04 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.35 Total: -69.42 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -2.46 Total: -58.78 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.27 kcal Total: -60.11 5.46 -54.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457178874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.225 kcal (2) G-P(sol) polarization free energy of solvation -60.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds