Wall clock time and date at job start Wed Apr 1 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99830 * 2 1 4 4 C 1.53010 * 109.46784 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47219 * 62.01832 * 4 3 2 6 6 C 1.37098 * 119.99784 * 263.34384 * 5 4 3 7 7 H 1.08002 * 120.00344 * 146.38583 * 6 5 4 8 8 C 1.38955 * 120.00133 * 326.38787 * 6 5 4 9 9 N 1.31408 * 120.00025 * 157.08886 * 8 6 5 10 10 Si 1.86797 * 119.99608 * 337.09348 * 8 6 5 11 11 H 1.48499 * 109.47304 * 90.83148 * 10 8 6 12 12 H 1.48504 * 109.46767 * 210.82802 * 10 8 6 13 13 H 1.48493 * 109.47347 * 330.83019 * 10 8 6 14 14 C 1.34778 * 120.00334 * 83.33988 * 5 4 3 15 15 O 1.21292 * 119.99891 * 5.04295 * 14 5 4 16 16 C 1.50701 * 119.99846 * 185.04009 * 14 5 4 17 17 H 1.09001 * 109.47515 * 311.95391 * 16 14 5 18 18 C 1.52996 * 109.47347 * 71.95949 * 16 14 5 19 19 O 1.42902 * 109.46883 * 191.95801 * 16 14 5 20 20 C 1.35973 * 117.00219 * 154.24090 * 19 16 14 21 21 C 1.38688 * 120.03158 * 3.61087 * 20 19 16 22 22 C 1.38160 * 119.98091 * 180.24831 * 21 20 19 23 23 C 1.38467 * 120.04887 * 359.47493 * 22 21 20 24 24 F 1.35100 * 119.96123 * 180.25065 * 23 22 21 25 25 C 1.38435 * 120.06849 * 0.27223 * 23 22 21 26 26 C 1.38253 * 120.01816 * 359.97438 * 25 23 22 27 27 Cl 1.73600 * 120.02570 * 180.02562 * 26 25 23 28 28 H 1.08995 * 109.46762 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.46651 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47197 * 300.00489 * 1 2 3 31 31 H 1.08993 * 109.47390 * 59.99890 * 3 2 1 32 32 H 1.09001 * 109.46769 * 299.99333 * 3 2 1 33 33 H 1.09001 * 109.47004 * 302.01300 * 4 3 2 34 34 H 1.08997 * 109.46321 * 182.01500 * 4 3 2 35 35 H 0.96997 * 119.99942 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.46905 * 307.31941 * 18 16 14 37 37 H 1.09002 * 109.46993 * 67.31477 * 18 16 14 38 38 H 1.08997 * 109.46808 * 187.31627 * 18 16 14 39 39 H 1.08003 * 120.01009 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.97388 * 179.74669 * 22 21 20 41 41 H 1.08005 * 119.98955 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9717 0.4998 -1.2187 6 6 4.2243 -0.8475 -1.1952 7 1 4.0148 -1.4515 -2.0657 8 6 4.7497 -1.4360 -0.0514 9 7 4.5822 -2.7218 0.1622 10 14 5.6941 -0.3994 1.1826 11 1 4.7567 0.1278 2.2066 12 1 6.7287 -1.2357 1.8426 13 1 6.3478 0.7337 0.4799 14 6 4.1245 1.1942 -2.3637 15 8 3.9902 2.3997 -2.3644 16 6 4.4624 0.4729 -3.6430 17 1 5.2876 -0.2165 -3.4644 18 6 3.2395 -0.3096 -4.1256 19 8 4.8432 1.4236 -4.6396 20 6 5.6662 0.9848 -5.6290 21 6 6.0374 -0.3505 -5.6819 22 6 6.8778 -0.7942 -6.6848 23 6 7.3412 0.0910 -7.6434 24 9 8.1588 -0.3458 -8.6261 25 6 6.9678 1.4232 -7.5955 26 6 6.1311 1.8713 -6.5903 27 17 5.6622 3.5418 -6.5305 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8543 0.6130 0.8723 34 1 3.9787 2.1798 0.0368 35 1 4.9487 -3.1325 0.9608 36 1 2.8703 -0.9413 -3.3177 37 1 2.4580 0.3877 -4.4277 38 1 3.5189 -0.9326 -4.9753 39 1 5.6724 -1.0425 -4.9374 40 1 7.1700 -1.8332 -6.7235 41 1 7.3297 2.1125 -8.3441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457181773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:21 Heat of formation + Delta-G solvation = -116.005924 kcal Electronic energy + Delta-G solvation = -28675.570143 eV Core-core repulsion = 24304.985446 eV Total energy + Delta-G solvation = -4370.584696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.91619 -40.38214 -39.02216 -37.45822 -36.81804 -36.27719 -34.90244 -32.08975 -31.96387 -30.97192 -29.44214 -28.95348 -25.93415 -25.15806 -24.10966 -23.33406 -22.69403 -21.72130 -19.12098 -18.44871 -17.81840 -17.31343 -16.57138 -16.27634 -15.88782 -15.75823 -15.46685 -15.20732 -14.92182 -14.80671 -14.56004 -14.38582 -14.20548 -13.74012 -13.54663 -13.32754 -13.03234 -12.84630 -12.46189 -12.39493 -12.11253 -11.84569 -11.75451 -11.59657 -11.49772 -11.28391 -10.99885 -10.92365 -10.79726 -10.75524 -10.53123 -10.13519 -9.91520 -9.26960 -9.14722 -9.09747 -8.62777 -8.03037 -7.96463 -6.54932 -4.09648 0.90198 1.07772 2.13278 2.94834 3.06722 3.16290 3.22445 3.36987 3.51274 4.05534 4.20023 4.25536 4.39939 4.61308 4.74018 4.90120 4.96226 5.22593 5.36191 5.44198 5.47059 5.52585 5.59709 5.66379 5.76048 5.78138 5.81590 5.89073 5.97426 5.99061 5.99415 6.08878 6.12484 6.23236 6.36705 6.51889 6.56722 7.18177 7.41437 7.71778 7.94294 8.11875 8.84346 9.22702 9.52205 10.54968 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003556 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.561214 B = 7872.362376 C = 8692.018234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.053 3.947 4 C 0.098 3.902 5 N -0.445 5.445 6 C -0.348 4.348 7 H 0.111 0.889 8 C 0.076 3.924 9 N -0.847 5.847 10 Si 0.870 3.130 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.481 3.519 15 O -0.579 6.579 16 C 0.080 3.920 17 H 0.103 0.897 18 C -0.173 4.173 19 O -0.272 6.272 20 C 0.147 3.853 21 C -0.174 4.174 22 C -0.103 4.103 23 C 0.060 3.940 24 F -0.139 7.139 25 C -0.109 4.109 26 C -0.051 4.051 27 Cl -0.044 7.044 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.275 0.725 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 3.322 -8.964 9.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C -0.024 4.024 4 C -0.025 4.025 5 N -0.166 5.166 6 C -0.474 4.474 7 H 0.128 0.872 8 C -0.133 4.133 9 N -0.482 5.482 10 Si 0.698 3.302 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.269 3.731 15 O -0.463 6.463 16 C 0.021 3.979 17 H 0.121 0.879 18 C -0.230 4.230 19 O -0.184 6.184 20 C 0.098 3.902 21 C -0.193 4.193 22 C -0.122 4.122 23 C 0.040 3.960 24 F -0.118 7.118 25 C -0.128 4.128 26 C -0.078 4.078 27 Cl -0.015 7.015 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.173 0.827 40 H 0.161 0.839 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.046 3.891 -8.813 9.633 hybrid contribution 0.352 0.322 0.715 0.859 sum 0.398 4.213 -8.098 9.137 Atomic orbital electron populations 1.22668 0.82931 1.02125 0.98834 1.88202 1.17738 1.26555 1.95050 1.22862 0.94781 0.85286 0.99518 1.21842 0.92445 0.98462 0.89704 1.43478 1.57836 1.08843 1.06427 1.19114 1.43966 0.80695 1.03673 0.87202 1.25185 0.95742 0.95332 0.97003 1.69768 1.40081 1.11319 1.27008 0.87154 0.80251 0.81115 0.81700 1.19908 1.21427 1.18567 1.19579 0.81855 0.86767 0.84944 1.90592 1.55631 1.13882 1.86196 1.22183 0.99348 0.89991 0.86372 0.87918 1.22310 0.97267 1.00539 1.02879 1.86304 1.59729 1.38709 1.33635 1.18842 0.90777 0.91524 0.89045 1.21329 1.01889 0.94719 1.01343 1.21045 0.97235 1.00400 0.93513 1.17261 0.96577 0.92409 0.89757 1.91492 1.70320 1.89916 1.60051 1.20735 0.98448 0.94877 0.98787 1.19817 1.03296 0.86830 0.97871 1.98384 1.91051 1.13954 1.98102 0.94871 0.90033 0.95121 0.93730 0.93174 0.89863 0.89829 0.91437 0.88229 0.91742 0.92010 0.82659 0.83854 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.22 10.37 -35.23 -0.37 -7.59 16 3 C 0.05 1.02 6.24 37.16 0.23 1.25 16 4 C 0.10 2.10 4.38 -4.04 -0.02 2.08 16 5 N -0.44 -10.11 2.18 -114.81 -0.25 -10.36 16 6 C -0.35 -8.32 8.31 -14.93 -0.12 -8.45 16 7 H 0.11 2.63 5.44 -52.49 -0.29 2.35 16 8 C 0.08 1.89 5.29 -17.47 -0.09 1.79 16 9 N -0.85 -22.03 13.96 55.50 0.77 -21.25 16 10 Si 0.87 19.49 25.08 -169.99 -4.26 15.22 16 11 H -0.27 -5.87 6.44 56.52 0.36 -5.51 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 14 C 0.48 10.79 6.91 -10.98 -0.08 10.71 16 15 O -0.58 -14.33 16.20 -14.07 -0.23 -14.56 16 16 C 0.08 1.50 1.82 -27.88 -0.05 1.45 16 17 H 0.10 1.87 5.57 -51.93 -0.29 1.58 16 18 C -0.17 -2.86 8.92 37.16 0.33 -2.53 16 19 O -0.27 -5.10 8.82 -39.28 -0.35 -5.45 16 20 C 0.15 2.32 6.60 -39.21 -0.26 2.06 16 21 C -0.17 -2.37 8.38 -39.44 -0.33 -2.70 16 22 C -0.10 -1.23 10.02 -39.53 -0.40 -1.62 16 23 C 0.06 0.73 7.30 -39.42 -0.29 0.44 16 24 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 25 C -0.11 -1.34 9.80 -39.50 -0.39 -1.73 16 26 C -0.05 -0.73 6.33 -39.37 -0.25 -0.98 16 27 Cl -0.04 -0.65 28.50 -51.86 -1.48 -2.13 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.84 3.00 -51.93 -0.16 1.68 16 34 H 0.08 1.72 7.56 -51.93 -0.39 1.33 16 35 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.10 1.80 5.97 -51.93 -0.31 1.49 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.86 7.07 -51.93 -0.37 0.49 16 39 H 0.16 2.02 5.43 -52.48 -0.28 1.74 16 40 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -28.83 357.67 -5.96 -34.79 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.64 Total: 4.22 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.59 Total: 3.38 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.52 Total: -31.62 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.94 Total: -27.60 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.26 Total: 15.22 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.83 -5.96 -34.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.211 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds