Wall clock time and date at job start Wed Apr 1 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99830 * 2 1 4 4 C 1.53010 * 109.46784 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47219 * 62.01832 * 4 3 2 6 6 C 1.37098 * 119.99784 * 263.34384 * 5 4 3 7 7 H 1.08002 * 120.00344 * 146.38583 * 6 5 4 8 8 C 1.38955 * 120.00133 * 326.38787 * 6 5 4 9 9 N 1.31408 * 120.00025 * 157.08886 * 8 6 5 10 10 Si 1.86797 * 119.99608 * 337.09348 * 8 6 5 11 11 H 1.48499 * 109.47304 * 90.83148 * 10 8 6 12 12 H 1.48504 * 109.46767 * 210.82802 * 10 8 6 13 13 H 1.48493 * 109.47347 * 330.83019 * 10 8 6 14 14 C 1.34778 * 120.00334 * 83.33988 * 5 4 3 15 15 O 1.21292 * 119.99891 * 5.04295 * 14 5 4 16 16 C 1.50701 * 119.99846 * 185.04009 * 14 5 4 17 17 H 1.09001 * 109.47515 * 311.95391 * 16 14 5 18 18 C 1.52996 * 109.47347 * 71.95949 * 16 14 5 19 19 O 1.42902 * 109.46883 * 191.95801 * 16 14 5 20 20 C 1.35973 * 117.00219 * 154.24090 * 19 16 14 21 21 C 1.38688 * 120.03158 * 3.61087 * 20 19 16 22 22 C 1.38160 * 119.98091 * 180.24831 * 21 20 19 23 23 C 1.38467 * 120.04887 * 359.47493 * 22 21 20 24 24 F 1.35100 * 119.96123 * 180.25065 * 23 22 21 25 25 C 1.38435 * 120.06849 * 0.27223 * 23 22 21 26 26 C 1.38253 * 120.01816 * 359.97438 * 25 23 22 27 27 Cl 1.73600 * 120.02570 * 180.02562 * 26 25 23 28 28 H 1.08995 * 109.46762 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.46651 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47197 * 300.00489 * 1 2 3 31 31 H 1.08993 * 109.47390 * 59.99890 * 3 2 1 32 32 H 1.09001 * 109.46769 * 299.99333 * 3 2 1 33 33 H 1.09001 * 109.47004 * 302.01300 * 4 3 2 34 34 H 1.08997 * 109.46321 * 182.01500 * 4 3 2 35 35 H 0.96997 * 119.99942 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.46905 * 307.31941 * 18 16 14 37 37 H 1.09002 * 109.46993 * 67.31477 * 18 16 14 38 38 H 1.08997 * 109.46808 * 187.31627 * 18 16 14 39 39 H 1.08003 * 120.01009 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.97388 * 179.74669 * 22 21 20 41 41 H 1.08005 * 119.98955 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9717 0.4998 -1.2187 6 6 4.2243 -0.8475 -1.1952 7 1 4.0148 -1.4515 -2.0657 8 6 4.7497 -1.4360 -0.0514 9 7 4.5822 -2.7218 0.1622 10 14 5.6941 -0.3994 1.1826 11 1 4.7567 0.1278 2.2066 12 1 6.7287 -1.2357 1.8426 13 1 6.3478 0.7337 0.4799 14 6 4.1245 1.1942 -2.3637 15 8 3.9902 2.3997 -2.3644 16 6 4.4624 0.4729 -3.6430 17 1 5.2876 -0.2165 -3.4644 18 6 3.2395 -0.3096 -4.1256 19 8 4.8432 1.4236 -4.6396 20 6 5.6662 0.9848 -5.6290 21 6 6.0374 -0.3505 -5.6819 22 6 6.8778 -0.7942 -6.6848 23 6 7.3412 0.0910 -7.6434 24 9 8.1588 -0.3458 -8.6261 25 6 6.9678 1.4232 -7.5955 26 6 6.1311 1.8713 -6.5903 27 17 5.6622 3.5418 -6.5305 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8543 0.6130 0.8723 34 1 3.9787 2.1798 0.0368 35 1 4.9487 -3.1325 0.9608 36 1 2.8703 -0.9413 -3.3177 37 1 2.4580 0.3877 -4.4277 38 1 3.5189 -0.9326 -4.9753 39 1 5.6724 -1.0425 -4.9374 40 1 7.1700 -1.8332 -6.7235 41 1 7.3297 2.1125 -8.3441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457181773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:20 Heat of formation + Delta-G solvation = -131.873318 kcal Electronic energy + Delta-G solvation = -28676.258204 eV Core-core repulsion = 24304.985446 eV Total energy + Delta-G solvation = -4371.272758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.90092 -41.72107 -40.55859 -38.80028 -38.20889 -37.39277 -36.69846 -33.95511 -33.35861 -32.04762 -30.83296 -30.20999 -27.24803 -26.95240 -25.50622 -24.58906 -23.95134 -23.02399 -20.83728 -19.66925 -19.36144 -18.47026 -18.10848 -17.59789 -17.48170 -16.92377 -16.86145 -16.54807 -16.37275 -16.11526 -15.90642 -15.75353 -15.44473 -15.31143 -14.83178 -14.58042 -14.51589 -14.23964 -13.96341 -13.63976 -13.62248 -13.27122 -13.22821 -13.17317 -12.84882 -12.51801 -12.44507 -12.35281 -12.15976 -11.97369 -11.84876 -11.80572 -11.66254 -11.04558 -10.59125 -10.36735 -10.11900 -9.79729 -9.18002 -8.44947 -5.99679 -0.11749 0.00849 1.02991 1.18117 1.34120 1.42851 1.67623 1.78634 2.21708 2.32288 2.71258 2.90310 3.12962 3.20819 3.58256 3.66983 3.87249 3.93655 4.03600 4.06499 4.12263 4.14802 4.21287 4.38308 4.48090 4.51153 4.55332 4.59875 4.71058 4.74078 4.77405 4.80329 4.85989 4.98208 5.01703 5.17202 5.38821 5.53051 6.04147 6.16833 6.27888 6.37603 6.98558 7.39877 7.72019 8.67596 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003556 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.561214 B = 7872.362376 C = 8692.018234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.060 3.940 4 C 0.087 3.913 5 N -0.451 5.451 6 C -0.338 4.338 7 H 0.105 0.895 8 C 0.043 3.957 9 N -0.881 5.881 10 Si 0.909 3.091 11 H -0.260 1.260 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.473 3.527 15 O -0.607 6.607 16 C 0.086 3.914 17 H 0.107 0.893 18 C -0.160 4.160 19 O -0.295 6.295 20 C 0.120 3.880 21 C -0.174 4.174 22 C -0.093 4.093 23 C 0.065 3.935 24 F -0.135 7.135 25 C -0.101 4.101 26 C -0.061 4.061 27 Cl -0.053 7.053 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.277 0.723 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 3.083 -9.786 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.018 4.018 4 C -0.035 4.035 5 N -0.172 5.172 6 C -0.465 4.465 7 H 0.123 0.877 8 C -0.163 4.163 9 N -0.517 5.517 10 Si 0.736 3.264 11 H -0.186 1.186 12 H -0.213 1.213 13 H -0.195 1.195 14 C 0.262 3.738 15 O -0.492 6.492 16 C 0.028 3.972 17 H 0.125 0.875 18 C -0.217 4.217 19 O -0.207 6.207 20 C 0.072 3.928 21 C -0.193 4.193 22 C -0.112 4.112 23 C 0.045 3.955 24 F -0.114 7.114 25 C -0.120 4.120 26 C -0.088 4.088 27 Cl -0.024 7.024 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.177 0.823 40 H 0.189 0.811 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.289 3.651 -9.635 10.307 hybrid contribution 0.296 0.412 0.845 0.986 sum 0.584 4.062 -8.789 9.700 Atomic orbital electron populations 1.22870 0.80476 1.03252 1.00358 1.88134 1.20542 1.27190 1.95350 1.22766 0.93078 0.85289 1.00629 1.21982 0.94450 0.98199 0.88906 1.43588 1.57956 1.08521 1.07107 1.19130 1.42989 0.81087 1.03321 0.87731 1.25596 0.96407 0.95897 0.98352 1.69817 1.41605 1.12375 1.27923 0.86513 0.79484 0.79722 0.80638 1.18635 1.21301 1.19525 1.20227 0.80921 0.86657 0.85964 1.90561 1.56738 1.15133 1.86804 1.22034 1.00272 0.89620 0.85304 0.87548 1.22196 0.96197 1.00176 1.03171 1.86252 1.61027 1.39087 1.34334 1.19111 0.91699 0.92829 0.89120 1.21386 1.02149 0.93833 1.01908 1.21306 0.95869 1.01697 0.92321 1.17329 0.96133 0.92391 0.89655 1.91511 1.70150 1.89842 1.59889 1.20932 0.97301 0.95443 0.98356 1.19963 1.04036 0.86395 0.98420 1.98378 1.91239 1.14624 1.98166 0.93998 0.89200 0.92843 0.90629 0.93880 0.90602 0.89613 0.91258 0.89845 0.92070 0.89141 0.82290 0.81122 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.01 16 2 O -0.39 -15.57 10.37 -148.98 -1.55 -17.11 16 3 C 0.06 2.22 6.24 71.99 0.45 2.67 16 4 C 0.09 3.69 4.38 86.38 0.38 4.07 16 5 N -0.45 -20.54 2.18 -635.53 -1.39 -21.93 16 6 C -0.34 -16.22 8.31 84.04 0.70 -15.52 16 7 H 0.11 5.05 5.44 -2.91 -0.02 5.03 16 8 C 0.04 2.14 5.29 84.93 0.45 2.58 16 9 N -0.88 -45.91 13.96 21.66 0.30 -45.60 16 10 Si 0.91 39.86 25.08 68.60 1.72 41.58 16 11 H -0.26 -10.79 6.44 99.48 0.64 -10.15 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 C 0.47 21.39 6.91 87.66 0.61 22.00 16 15 O -0.61 -30.38 16.20 15.69 0.25 -30.12 16 16 C 0.09 3.25 1.82 29.85 0.05 3.30 16 17 H 0.11 3.85 5.57 -2.39 -0.01 3.84 16 18 C -0.16 -5.22 8.92 71.98 0.64 -4.58 16 19 O -0.29 -11.00 8.82 -74.49 -0.66 -11.66 16 20 C 0.12 3.67 6.60 22.51 0.15 3.82 16 21 C -0.17 -4.43 8.38 22.36 0.19 -4.24 16 22 C -0.09 -1.96 10.02 22.31 0.22 -1.73 16 23 C 0.06 1.41 7.30 22.37 0.16 1.57 16 24 F -0.14 -2.89 17.27 44.97 0.78 -2.11 16 25 C -0.10 -2.27 9.80 22.32 0.22 -2.05 16 26 C -0.06 -1.69 6.33 22.40 0.14 -1.55 16 27 Cl -0.05 -1.54 28.50 -2.72 -0.08 -1.62 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 3.30 3.00 -2.39 -0.01 3.30 16 34 H 0.09 3.52 7.56 -2.39 -0.02 3.50 16 35 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.08 3.01 5.97 -2.39 -0.01 2.99 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.38 7.07 -2.39 -0.02 2.36 16 39 H 0.16 3.89 5.43 -2.91 -0.02 3.87 16 40 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -61.54 357.67 6.01 -55.52 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.02 Total: 20.70 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.61 Total: 12.35 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -1.08 Total: -67.53 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -1.95 Total: -58.89 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.72 Total: 41.58 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -61.54 6.01 -55.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.350 kcal (2) G-P(sol) polarization free energy of solvation -61.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds