Wall clock time and date at job start Wed Apr 1 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47040 * 2 1 4 4 N 1.46502 * 109.47018 * 240.00215 * 2 1 3 5 5 C 1.34777 * 120.00133 * 85.00135 * 4 2 1 6 6 O 1.21700 * 119.99854 * 359.97438 * 5 4 2 7 7 C 1.46585 * 120.00067 * 180.02562 * 5 4 2 8 8 C 1.36645 * 125.45861 * 179.97438 * 7 5 4 9 9 C 1.37464 * 113.29936 * 179.97438 * 8 7 5 10 10 C 1.33818 * 115.10347 * 359.97438 * 9 8 7 11 11 S 1.70624 * 110.94971 * 359.72769 * 10 9 8 12 12 C 1.50694 * 109.47415 * 120.00306 * 2 1 3 13 13 O 1.21273 * 120.00406 * 119.99656 * 12 2 1 14 14 N 1.34780 * 119.99896 * 299.99999 * 12 2 1 15 15 C 1.39468 * 120.00345 * 185.05327 * 14 12 2 16 16 C 1.38589 * 119.58301 * 185.35151 * 15 14 12 17 17 C 1.40814 * 118.79768 * 179.97438 * 16 15 14 18 18 C 1.41540 * 120.99637 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99950 * 153.73095 * 18 17 16 20 20 C 1.40030 * 120.00251 * 333.74095 * 18 17 16 21 21 N 1.30742 * 120.00111 * 350.15916 * 20 18 17 22 22 Si 1.86795 * 120.00026 * 170.16525 * 20 18 17 23 23 H 1.48501 * 109.47191 * 59.99676 * 22 20 18 24 24 H 1.48501 * 109.47323 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47314 * 299.99606 * 22 20 18 26 26 C 1.41173 * 118.00445 * 0.02562 * 17 16 15 27 27 C 1.37589 * 119.01676 * 359.97438 * 26 17 16 28 28 N 1.32077 * 121.10938 * 359.97438 * 27 26 17 29 29 H 1.09004 * 109.47041 * 60.00010 * 1 2 3 30 30 H 1.09006 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47124 * 299.99509 * 1 2 3 32 32 H 0.97007 * 120.00010 * 264.99853 * 4 2 1 33 33 H 1.08005 * 123.35039 * 359.97438 * 8 7 5 34 34 H 1.08002 * 122.45183 * 180.02562 * 9 8 7 35 35 H 1.07994 * 124.53083 * 180.02562 * 10 9 8 36 36 H 0.97001 * 119.99811 * 5.05452 * 14 12 2 37 37 H 1.08000 * 120.60165 * 0.02562 * 16 15 14 38 38 H 0.96995 * 120.00131 * 180.02562 * 21 20 18 39 39 H 1.08003 * 120.49197 * 180.02562 * 26 17 16 40 40 H 1.07998 * 119.44241 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8572 1.1625 -2.4119 7 6 2.6351 -0.7093 -3.5542 8 6 2.8074 -0.1390 -4.7839 9 6 3.2792 -1.0180 -5.7297 10 6 3.4873 -2.2653 -5.2917 11 16 3.1015 -2.4027 -3.6354 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.2561 -0.8425 3.5913 16 6 1.8317 -0.4375 4.8469 17 6 2.3970 -1.0472 5.9834 18 6 1.9975 -0.6698 7.2877 19 1 2.0835 -1.3725 8.1034 20 6 1.4907 0.6146 7.5206 21 7 1.5634 1.5256 6.5857 22 14 0.7108 1.0265 9.1672 23 1 1.7085 0.8328 10.2499 24 1 0.2570 2.4405 9.1602 25 1 -0.4528 0.1340 9.4009 26 6 3.3741 -2.0462 5.7827 27 6 3.7314 -2.3816 4.4971 28 7 3.1762 -1.7861 3.4571 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 2.5941 0.8991 -4.9922 34 1 3.4689 -0.7234 -6.7513 35 1 3.8553 -3.0755 -5.9036 36 1 1.0904 0.4935 2.5449 37 1 1.0805 0.3313 4.9518 38 1 1.2127 2.4154 6.7471 39 1 3.8337 -2.5405 6.6259 40 1 4.4785 -3.1446 4.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532435021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:05 Heat of formation + Delta-G solvation = 1.692753 kcal Electronic energy + Delta-G solvation = -26192.471065 eV Core-core repulsion = 22292.095848 eV Total energy + Delta-G solvation = -3900.375216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41025 -39.41217 -38.06569 -37.55488 -35.00101 -34.41880 -33.86618 -31.52202 -30.56855 -29.64820 -28.43233 -26.05689 -25.54995 -24.35504 -22.19109 -21.94796 -20.94066 -20.02320 -19.42562 -18.95711 -17.81770 -17.02656 -16.38959 -16.04134 -15.63126 -15.45544 -15.22214 -14.95901 -14.67946 -14.25166 -14.05418 -13.88314 -13.58406 -13.27229 -13.05894 -12.94044 -12.74791 -12.63422 -12.62159 -12.35958 -12.18085 -11.66565 -11.45579 -11.23900 -11.21953 -10.95866 -10.34771 -10.27518 -10.20529 -9.85665 -9.61764 -9.44854 -9.32520 -9.10484 -8.87888 -8.04731 -7.82343 -7.12634 -6.80375 -4.68118 0.24005 1.19958 1.61315 2.12661 2.41511 2.76133 2.77462 2.98652 3.01256 3.01989 3.12452 3.34514 3.56868 3.81874 4.55193 4.63170 4.68830 4.79885 4.98295 5.01502 5.11511 5.17964 5.48016 5.60461 5.62803 5.69409 5.87320 5.88989 6.02108 6.03554 6.18088 6.49527 6.56036 6.73670 6.88934 7.07162 7.28165 7.31406 7.38677 7.66192 7.85921 7.97544 8.12325 8.33699 8.60680 8.69565 8.73769 9.59500 10.04871 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.002167 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.142268 B =12915.569128 C =13798.905434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.117 0.883 4 N -0.706 5.706 5 C 0.595 3.405 6 O -0.531 6.531 7 C -0.266 4.266 8 C -0.056 4.056 9 C -0.152 4.152 10 C -0.233 4.233 11 S 0.216 5.784 12 C 0.498 3.502 13 O -0.479 6.479 14 N -0.650 5.650 15 C 0.333 3.667 16 C -0.236 4.236 17 C 0.141 3.859 18 C -0.453 4.453 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.916 3.084 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.280 4.280 27 C 0.118 3.882 28 N -0.554 5.554 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.410 0.590 37 H 0.134 0.866 38 H 0.282 0.718 39 H 0.103 0.897 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -2.594 -18.238 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.134 0.866 4 N -0.359 5.359 5 C 0.381 3.619 6 O -0.410 6.410 7 C -0.387 4.387 8 C -0.090 4.090 9 C -0.183 4.183 10 C -0.371 4.371 11 S 0.483 5.517 12 C 0.281 3.719 13 O -0.350 6.350 14 N -0.296 5.296 15 C 0.109 3.891 16 C -0.261 4.261 17 C 0.133 3.867 18 C -0.485 4.485 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.420 5.420 22 Si 0.740 3.260 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.304 4.304 27 C -0.037 4.037 28 N -0.273 5.273 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.246 0.754 37 H 0.152 0.848 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.259 -3.673 -18.259 18.667 hybrid contribution -0.671 1.640 0.533 1.850 sum -1.930 -2.033 -17.725 17.946 Atomic orbital electron populations 1.22148 0.92699 1.03319 1.03708 1.20851 0.95760 0.98186 0.83577 0.86572 1.45603 1.67162 1.14661 1.08448 1.16885 0.77298 0.86033 0.81675 1.90827 1.50625 1.14826 1.84689 1.24614 1.16157 0.98997 0.98924 1.20798 0.96526 1.01436 0.90241 1.20042 1.04212 0.92479 1.01572 1.25397 1.08454 1.02358 1.00924 1.83355 1.58132 1.05896 1.04324 1.20464 0.81594 0.85420 0.84381 1.90769 1.34728 1.23958 1.85520 1.43318 1.46492 1.35577 1.04240 1.18167 0.93425 0.93089 0.84459 1.21678 1.06841 1.08168 0.89451 1.17590 0.87505 0.88532 0.93091 1.19556 1.36562 0.97911 0.94431 0.90048 1.25957 0.93440 0.95937 0.98993 1.69718 1.34361 1.03885 1.34071 0.86239 0.80195 0.78022 0.81548 1.18897 1.20223 1.18759 1.21936 1.04618 1.07159 0.96709 1.21743 0.96896 0.96851 0.88172 1.67152 1.13634 1.12443 1.34110 0.90814 0.91599 0.90529 0.75491 0.82843 0.83721 0.81353 0.75396 0.84844 0.90651 0.87904 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.38 37.16 0.35 -1.48 16 2 C 0.12 1.74 2.99 -69.08 -0.21 1.54 16 3 H 0.12 1.62 7.58 -51.93 -0.39 1.23 16 4 N -0.71 -9.65 4.95 -56.27 -0.28 -9.93 16 5 C 0.59 8.29 7.75 -12.89 -0.10 8.19 16 6 O -0.53 -8.67 16.50 5.19 0.09 -8.59 16 7 C -0.27 -3.09 6.45 -36.79 -0.24 -3.32 16 8 C -0.06 -0.57 10.01 -40.44 -0.40 -0.97 16 9 C -0.15 -1.20 10.15 -41.42 -0.42 -1.62 16 10 C -0.23 -1.76 10.92 29.18 0.32 -1.44 16 11 S 0.22 1.98 22.16 -107.50 -2.38 -0.40 16 12 C 0.50 8.90 7.17 -10.99 -0.08 8.82 16 13 O -0.48 -10.20 14.13 5.56 0.08 -10.12 16 14 N -0.65 -12.14 5.31 -11.49 -0.06 -12.20 16 15 C 0.33 7.80 7.40 -154.70 -1.15 6.65 16 16 C -0.24 -5.81 8.61 -38.48 -0.33 -6.14 16 17 C 0.14 3.63 5.60 -106.55 -0.60 3.03 16 18 C -0.45 -11.39 9.14 -37.65 -0.34 -11.73 16 19 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 20 C 0.08 1.77 5.31 -17.34 -0.09 1.68 16 21 N -0.79 -19.12 10.70 55.55 0.59 -18.52 16 22 Si 0.92 17.64 29.57 -169.99 -5.03 12.61 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 24 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.28 -6.72 9.90 -38.71 -0.38 -7.10 16 27 C 0.12 2.75 11.15 -17.68 -0.20 2.55 16 28 N -0.55 -13.68 7.89 -12.53 -0.10 -13.78 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.76 7.46 -51.93 -0.39 0.37 16 32 H 0.41 5.46 6.90 -40.82 -0.28 5.18 16 33 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.41 6.29 7.98 -40.82 -0.33 5.97 16 37 H 0.13 3.26 6.11 -52.49 -0.32 2.94 16 38 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 39 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 40 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -31.70 363.22 -9.70 -41.40 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -4.22 Total: 15.42 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.87 Total: -1.35 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.16 Total: -54.44 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.16 Total: -18.71 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.70 -9.70 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.092 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds