Wall clock time and date at job start Wed Apr 1 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47040 * 2 1 4 4 N 1.46502 * 109.47018 * 240.00215 * 2 1 3 5 5 C 1.34777 * 120.00133 * 85.00135 * 4 2 1 6 6 O 1.21700 * 119.99854 * 359.97438 * 5 4 2 7 7 C 1.46585 * 120.00067 * 180.02562 * 5 4 2 8 8 C 1.36645 * 125.45861 * 179.97438 * 7 5 4 9 9 C 1.37464 * 113.29936 * 179.97438 * 8 7 5 10 10 C 1.33818 * 115.10347 * 359.97438 * 9 8 7 11 11 S 1.70624 * 110.94971 * 359.72769 * 10 9 8 12 12 C 1.50694 * 109.47415 * 120.00306 * 2 1 3 13 13 O 1.21273 * 120.00406 * 119.99656 * 12 2 1 14 14 N 1.34780 * 119.99896 * 299.99999 * 12 2 1 15 15 C 1.39468 * 120.00345 * 185.05327 * 14 12 2 16 16 C 1.38589 * 119.58301 * 185.35151 * 15 14 12 17 17 C 1.40814 * 118.79768 * 179.97438 * 16 15 14 18 18 C 1.41540 * 120.99637 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99950 * 153.73095 * 18 17 16 20 20 C 1.40030 * 120.00251 * 333.74095 * 18 17 16 21 21 N 1.30742 * 120.00111 * 350.15916 * 20 18 17 22 22 Si 1.86795 * 120.00026 * 170.16525 * 20 18 17 23 23 H 1.48501 * 109.47191 * 59.99676 * 22 20 18 24 24 H 1.48501 * 109.47323 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47314 * 299.99606 * 22 20 18 26 26 C 1.41173 * 118.00445 * 0.02562 * 17 16 15 27 27 C 1.37589 * 119.01676 * 359.97438 * 26 17 16 28 28 N 1.32077 * 121.10938 * 359.97438 * 27 26 17 29 29 H 1.09004 * 109.47041 * 60.00010 * 1 2 3 30 30 H 1.09006 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47124 * 299.99509 * 1 2 3 32 32 H 0.97007 * 120.00010 * 264.99853 * 4 2 1 33 33 H 1.08005 * 123.35039 * 359.97438 * 8 7 5 34 34 H 1.08002 * 122.45183 * 180.02562 * 9 8 7 35 35 H 1.07994 * 124.53083 * 180.02562 * 10 9 8 36 36 H 0.97001 * 119.99811 * 5.05452 * 14 12 2 37 37 H 1.08000 * 120.60165 * 0.02562 * 16 15 14 38 38 H 0.96995 * 120.00131 * 180.02562 * 21 20 18 39 39 H 1.08003 * 120.49197 * 180.02562 * 26 17 16 40 40 H 1.07998 * 119.44241 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8572 1.1625 -2.4119 7 6 2.6351 -0.7093 -3.5542 8 6 2.8074 -0.1390 -4.7839 9 6 3.2792 -1.0180 -5.7297 10 6 3.4873 -2.2653 -5.2917 11 16 3.1015 -2.4027 -3.6354 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.2561 -0.8425 3.5913 16 6 1.8317 -0.4375 4.8469 17 6 2.3970 -1.0472 5.9834 18 6 1.9975 -0.6698 7.2877 19 1 2.0835 -1.3725 8.1034 20 6 1.4907 0.6146 7.5206 21 7 1.5634 1.5256 6.5857 22 14 0.7108 1.0265 9.1672 23 1 1.7085 0.8328 10.2499 24 1 0.2570 2.4405 9.1602 25 1 -0.4528 0.1340 9.4009 26 6 3.3741 -2.0462 5.7827 27 6 3.7314 -2.3816 4.4971 28 7 3.1762 -1.7861 3.4571 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 2.5941 0.8991 -4.9922 34 1 3.4689 -0.7234 -6.7513 35 1 3.8553 -3.0755 -5.9036 36 1 1.0904 0.4935 2.5449 37 1 1.0805 0.3313 4.9518 38 1 1.2127 2.4154 6.7471 39 1 3.8337 -2.5405 6.6259 40 1 4.4785 -3.1446 4.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532435021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:04 Heat of formation + Delta-G solvation = -17.979767 kcal Electronic energy + Delta-G solvation = -26193.324129 eV Core-core repulsion = 22292.095848 eV Total energy + Delta-G solvation = -3901.228281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74258 -40.75576 -39.61497 -38.42471 -36.32206 -36.00895 -35.58768 -32.68863 -32.35618 -30.65307 -29.94257 -27.92007 -26.44638 -25.45526 -23.86095 -23.42678 -22.21716 -21.33813 -20.48890 -19.86634 -19.52654 -18.42405 -17.61095 -17.29627 -16.98176 -16.78866 -16.46003 -16.11810 -16.05231 -15.97965 -15.69158 -15.05795 -14.77503 -14.64297 -14.39953 -14.30943 -13.95957 -13.70651 -13.59147 -13.42961 -13.20477 -13.16697 -12.86782 -12.73795 -12.68806 -12.09798 -11.92844 -11.91753 -11.54437 -11.34880 -11.19716 -11.09490 -10.48732 -9.93736 -9.88662 -9.65027 -9.57253 -8.91072 -8.58955 -6.58093 -0.52272 0.46954 0.67978 0.93648 1.00080 1.36981 1.42099 1.52161 1.53873 1.60995 1.74216 2.08601 2.20522 2.23398 2.82055 3.34343 3.68267 3.72782 3.92717 4.01728 4.13564 4.17686 4.34528 4.53820 4.54809 4.68987 4.73768 4.81109 4.91150 5.00733 5.07284 5.09975 5.10895 5.20295 5.24158 5.36099 5.46598 5.59602 5.91173 6.10283 6.22833 6.41132 6.54585 6.78072 6.83591 6.90681 7.12762 7.78321 8.28655 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.002167 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.142268 B =12915.569128 C =13798.905434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.119 0.881 4 N -0.707 5.707 5 C 0.595 3.405 6 O -0.563 6.563 7 C -0.305 4.305 8 C -0.051 4.051 9 C -0.158 4.158 10 C -0.215 4.215 11 S 0.214 5.786 12 C 0.500 3.500 13 O -0.513 6.513 14 N -0.643 5.643 15 C 0.331 3.669 16 C -0.253 4.253 17 C 0.111 3.889 18 C -0.482 4.482 19 H 0.084 0.916 20 C 0.037 3.963 21 N -0.816 5.816 22 Si 0.989 3.011 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.259 1.259 26 C -0.294 4.294 27 C 0.113 3.887 28 N -0.576 5.576 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.425 0.575 37 H 0.131 0.869 38 H 0.292 0.708 39 H 0.116 0.884 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -2.627 -19.251 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.136 0.864 4 N -0.359 5.359 5 C 0.384 3.616 6 O -0.444 6.444 7 C -0.425 4.425 8 C -0.086 4.086 9 C -0.188 4.188 10 C -0.352 4.352 11 S 0.482 5.518 12 C 0.286 3.714 13 O -0.386 6.386 14 N -0.291 5.291 15 C 0.106 3.894 16 C -0.279 4.279 17 C 0.103 3.897 18 C -0.513 4.513 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.442 5.442 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.318 4.318 27 C -0.041 4.041 28 N -0.296 5.296 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.172 0.828 34 H 0.191 0.809 35 H 0.218 0.782 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.658 -3.704 -19.296 19.718 hybrid contribution -0.482 1.611 0.736 1.836 sum -2.141 -2.093 -18.560 18.800 Atomic orbital electron populations 1.22136 0.90410 1.03828 1.04812 1.20791 0.97337 0.97397 0.81781 0.86371 1.45642 1.67241 1.14678 1.08358 1.17201 0.76564 0.85728 0.82156 1.90794 1.52278 1.16097 1.85273 1.24496 1.18940 1.00546 0.98566 1.21057 0.95450 1.01900 0.90193 1.20292 1.03922 0.92139 1.02464 1.25822 1.06400 1.03098 0.99926 1.83371 1.58153 1.04288 1.06013 1.21093 0.80556 0.84890 0.84890 1.90745 1.36172 1.25620 1.86047 1.43297 1.46486 1.35737 1.03538 1.18387 0.92859 0.92563 0.85602 1.21665 1.07491 1.08778 0.89935 1.18031 0.88282 0.89445 0.93945 1.19845 1.37973 0.99028 0.94457 0.89837 1.26804 0.93233 0.95196 1.02737 1.69758 1.34142 1.04458 1.35878 0.85140 0.79104 0.78147 0.76685 1.18605 1.19099 1.18341 1.22119 1.04785 1.07340 0.97537 1.22204 0.97010 0.97012 0.87865 1.67283 1.14426 1.13235 1.34650 0.90235 0.91383 0.88870 0.75349 0.82841 0.80881 0.78224 0.73678 0.85186 0.89730 0.86575 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.38 71.98 0.68 -2.69 16 2 C 0.14 3.76 2.99 44.24 0.13 3.89 16 3 H 0.12 3.29 7.58 -2.39 -0.02 3.27 16 4 N -0.71 -19.45 4.95 -450.17 -2.23 -21.67 16 5 C 0.60 16.72 7.75 86.42 0.67 17.39 16 6 O -0.56 -18.61 16.50 -4.35 -0.07 -18.69 16 7 C -0.31 -6.96 6.45 24.08 0.16 -6.80 16 8 C -0.05 -0.97 10.01 21.71 0.22 -0.76 16 9 C -0.16 -2.09 10.15 21.08 0.21 -1.88 16 10 C -0.21 -2.62 10.92 66.81 0.73 -1.89 16 11 S 0.21 3.70 22.16 -56.49 -1.25 2.45 16 12 C 0.50 17.96 7.17 87.65 0.63 18.59 16 13 O -0.51 -22.11 14.13 -3.01 -0.04 -22.16 16 14 N -0.64 -24.16 5.31 -308.67 -1.64 -25.80 16 15 C 0.33 15.77 7.40 132.75 0.98 16.75 16 16 C -0.25 -12.74 8.61 22.98 0.20 -12.54 16 17 C 0.11 5.83 5.60 -21.11 -0.12 5.72 16 18 C -0.48 -24.53 9.14 23.52 0.21 -24.31 16 19 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 20 C 0.04 1.72 5.31 85.29 0.45 2.18 16 21 N -0.82 -39.31 10.70 21.84 0.23 -39.08 16 22 Si 0.99 35.49 29.57 68.60 2.03 37.51 16 23 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 24 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 25 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 26 C -0.29 -14.29 9.90 22.84 0.23 -14.07 16 27 C 0.11 5.31 11.15 84.50 0.94 6.25 16 28 N -0.58 -28.77 7.89 -193.54 -1.53 -30.30 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.09 1.72 7.46 -2.39 -0.02 1.70 16 32 H 0.41 11.10 6.90 -92.70 -0.64 10.46 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.42 12.98 7.98 -92.71 -0.74 12.24 16 37 H 0.13 6.50 6.11 -2.91 -0.02 6.48 16 38 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 39 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 40 H 0.15 6.04 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -69.24 363.22 1.56 -67.68 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.26 Total: 44.23 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.32 Total: 5.82 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -5.16 Total: -116.85 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.11 Total: -40.84 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.51 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.25 Total: 2.45 kcal Total: -69.24 1.56 -67.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.696 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds