Wall clock time and date at job start Wed Apr 1 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46686 * 2 1 4 4 N 1.46499 * 109.47234 * 119.99740 * 2 1 3 5 5 C 1.34777 * 119.99770 * 275.00665 * 4 2 1 6 6 O 1.21705 * 120.00289 * 359.97438 * 5 4 2 7 7 C 1.46582 * 119.99932 * 180.02562 * 5 4 2 8 8 C 1.36652 * 125.46287 * 179.97438 * 7 5 4 9 9 C 1.37467 * 113.29749 * 179.97438 * 8 7 5 10 10 C 1.33814 * 115.10658 * 0.02562 * 9 8 7 11 11 S 1.70621 * 110.95066 * 359.75991 * 10 9 8 12 12 C 1.50692 * 109.47182 * 240.00201 * 2 1 3 13 13 O 1.21278 * 119.99925 * 239.99584 * 12 2 1 14 14 N 1.34775 * 120.00352 * 59.99735 * 12 2 1 15 15 C 1.39469 * 120.00218 * 175.18812 * 14 12 2 16 16 C 1.38597 * 119.58338 * 185.05161 * 15 14 12 17 17 C 1.40806 * 118.79554 * 179.77923 * 16 15 14 18 18 C 1.41544 * 120.99314 * 180.25805 * 17 16 15 19 19 H 1.08002 * 120.00088 * 203.80257 * 18 17 16 20 20 C 1.40032 * 120.00238 * 23.80564 * 18 17 16 21 21 N 1.30744 * 120.00006 * 17.14672 * 20 18 17 22 22 Si 1.86799 * 120.00189 * 197.14395 * 20 18 17 23 23 H 1.48498 * 109.46780 * 60.00008 * 22 20 18 24 24 H 1.48500 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47308 * 300.00187 * 22 20 18 26 26 C 1.41169 * 118.01170 * 0.48348 * 17 16 15 27 27 C 1.37598 * 119.01359 * 359.75423 * 26 17 16 28 28 N 1.32078 * 121.10518 * 0.02562 * 27 26 17 29 29 H 1.09000 * 109.46686 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47114 * 299.99717 * 1 2 3 31 31 H 1.08995 * 109.46945 * 60.00276 * 1 2 3 32 32 H 0.96992 * 120.00073 * 95.00360 * 4 2 1 33 33 H 1.08002 * 123.34407 * 359.94158 * 8 7 5 34 34 H 1.08004 * 122.44420 * 180.02562 * 9 8 7 35 35 H 1.07994 * 124.52864 * 179.97438 * 10 9 8 36 36 H 0.97000 * 119.99972 * 355.18068 * 14 12 2 37 37 H 1.08003 * 120.59878 * 359.97438 * 16 15 14 38 38 H 0.96992 * 120.00093 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.49678 * 179.78289 * 26 17 16 40 40 H 1.07993 * 119.44578 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8579 1.1628 2.4117 7 6 2.6362 -0.7089 3.5539 8 6 2.8094 -0.1384 4.7835 9 6 3.2811 -1.0175 5.7292 10 6 3.4883 -2.2650 5.2915 11 16 3.0882 -2.4060 3.6389 12 6 2.0324 -0.7103 -1.2304 13 8 2.7297 -1.6963 -1.1192 14 7 1.7068 -0.2499 -2.4545 15 6 2.2523 -0.8457 -3.5915 16 6 1.9955 -0.3006 -4.8396 17 6 2.5584 -0.9127 -5.9759 18 6 2.3311 -0.3919 -7.2723 19 1 2.4199 -1.0347 -8.1357 20 6 1.9911 0.9567 -7.4354 21 7 2.2048 1.8067 -6.4653 22 14 1.2323 1.5412 -9.0391 23 1 -0.0433 0.8186 -9.2755 24 1 0.9665 3.0000 -8.9583 25 1 2.1697 1.2697 -10.1583 26 6 3.3522 -2.0642 -5.7840 27 6 3.5468 -2.5352 -4.5058 28 7 3.0044 -1.9289 -3.4653 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2492 -1.6316 1.1527 33 1 2.5974 0.9000 4.9913 34 1 3.4707 -0.7228 6.7508 35 1 3.8560 -3.0752 5.9035 36 1 1.0931 0.4958 -2.5448 37 1 1.3775 0.5796 -4.9386 38 1 1.9690 2.7407 -6.5781 39 1 3.8005 -2.5677 -6.6277 40 1 4.1531 -3.4153 -4.3509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532435026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:08 Heat of formation + Delta-G solvation = 1.641916 kcal Electronic energy + Delta-G solvation = -26198.541430 eV Core-core repulsion = 22298.164009 eV Total energy + Delta-G solvation = -3900.377421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40790 -39.40832 -38.05877 -37.55085 -35.00056 -34.42271 -33.87543 -31.52223 -30.59198 -29.64784 -28.42912 -26.05758 -25.55020 -24.35476 -22.19231 -21.95556 -20.93534 -20.02090 -19.42679 -18.95899 -17.81236 -17.03433 -16.38943 -16.04240 -15.61380 -15.44210 -15.23947 -14.95526 -14.68808 -14.27009 -14.03496 -13.88142 -13.63745 -13.25963 -13.05570 -12.93819 -12.76097 -12.62973 -12.60815 -12.37156 -12.16058 -11.66982 -11.48074 -11.26454 -11.21832 -10.94390 -10.36032 -10.27788 -10.21459 -9.86044 -9.61609 -9.40459 -9.32411 -9.10376 -8.87718 -8.07027 -7.80876 -7.11906 -6.87816 -4.66694 0.24130 1.20093 1.61468 2.12778 2.42336 2.75083 2.77477 2.98086 3.00429 3.02230 3.13017 3.34913 3.56825 3.80574 4.55386 4.60421 4.68665 4.79437 4.98226 5.01581 5.11556 5.18112 5.47498 5.61721 5.62804 5.69159 5.87372 5.89179 6.02182 6.03135 6.18131 6.49700 6.56505 6.74516 6.87847 7.03966 7.28498 7.31877 7.37630 7.65815 7.83582 7.97576 8.12292 8.33148 8.60446 8.68003 8.74036 9.60769 10.00629 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.002187 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.674988 B =12802.721603 C =13674.334237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.117 0.883 4 N -0.706 5.706 5 C 0.595 3.405 6 O -0.531 6.531 7 C -0.266 4.266 8 C -0.056 4.056 9 C -0.152 4.152 10 C -0.233 4.233 11 S 0.216 5.784 12 C 0.497 3.503 13 O -0.478 6.478 14 N -0.650 5.650 15 C 0.335 3.665 16 C -0.242 4.242 17 C 0.143 3.857 18 C -0.455 4.455 19 H 0.083 0.917 20 C 0.078 3.922 21 N -0.785 5.785 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.284 4.284 27 C 0.119 3.881 28 N -0.556 5.556 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.410 0.590 37 H 0.128 0.872 38 H 0.284 0.716 39 H 0.102 0.898 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 -2.788 18.068 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.134 0.866 4 N -0.359 5.359 5 C 0.381 3.619 6 O -0.410 6.410 7 C -0.387 4.387 8 C -0.090 4.090 9 C -0.183 4.183 10 C -0.371 4.371 11 S 0.483 5.517 12 C 0.281 3.719 13 O -0.348 6.348 14 N -0.296 5.296 15 C 0.111 3.889 16 C -0.267 4.267 17 C 0.135 3.865 18 C -0.486 4.486 19 H 0.101 0.899 20 C -0.141 4.141 21 N -0.411 5.411 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.307 4.307 27 C -0.035 4.035 28 N -0.275 5.275 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.245 0.755 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.147 -3.963 18.108 18.660 hybrid contribution -0.521 1.824 -0.505 1.963 sum -2.668 -2.139 17.602 17.931 Atomic orbital electron populations 1.22144 0.92717 1.03307 1.03672 1.20853 0.95750 0.98194 0.83594 0.86572 1.45598 1.67165 1.14671 1.08437 1.16886 0.77292 0.86037 0.81679 1.90828 1.50646 1.14803 1.84689 1.24615 1.16243 0.98902 0.98931 1.20801 0.96541 1.01459 0.90200 1.20042 1.04190 0.92520 1.01554 1.25395 1.08396 1.02353 1.00984 1.83354 1.58162 1.05554 1.04640 1.20466 0.81691 0.85412 0.84364 1.90777 1.34751 1.23802 1.85481 1.43308 1.46764 1.35280 1.04256 1.18144 0.94576 0.91746 0.84451 1.21528 1.09314 1.05756 0.90117 1.17557 0.86616 0.89349 0.92992 1.19555 1.41285 0.94476 0.93236 0.89933 1.25972 0.92888 0.96686 0.98589 1.69763 1.33635 1.04378 1.33281 0.86300 0.80543 0.77900 0.81655 1.18669 1.20209 1.18841 1.21896 1.08176 1.03801 0.96867 1.21751 0.96331 0.97164 0.88219 1.67188 1.16050 1.10500 1.33771 0.91596 0.90815 0.90581 0.75481 0.82842 0.83720 0.81351 0.75480 0.85429 0.90537 0.87943 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.38 37.16 0.35 -1.47 16 2 C 0.12 1.74 2.99 -69.08 -0.21 1.54 16 3 H 0.12 1.63 7.58 -51.93 -0.39 1.23 16 4 N -0.71 -9.68 4.95 -56.27 -0.28 -9.95 16 5 C 0.59 8.31 7.75 -12.90 -0.10 8.21 16 6 O -0.53 -8.69 16.50 5.18 0.09 -8.60 16 7 C -0.27 -3.09 6.45 -36.79 -0.24 -3.33 16 8 C -0.06 -0.57 10.01 -40.44 -0.40 -0.97 16 9 C -0.15 -1.21 10.15 -41.42 -0.42 -1.63 16 10 C -0.23 -1.77 10.92 29.18 0.32 -1.45 16 11 S 0.22 1.99 22.16 -107.50 -2.38 -0.40 16 12 C 0.50 8.91 7.18 -10.99 -0.08 8.83 16 13 O -0.48 -10.20 14.09 5.56 0.08 -10.12 16 14 N -0.65 -12.14 5.31 -11.49 -0.06 -12.20 16 15 C 0.34 7.85 7.42 -154.70 -1.15 6.71 16 16 C -0.24 -5.95 8.62 -38.48 -0.33 -6.28 16 17 C 0.14 3.68 5.60 -106.55 -0.60 3.08 16 18 C -0.45 -11.42 9.12 -37.65 -0.34 -11.76 16 19 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 20 C 0.08 1.85 5.19 -17.34 -0.09 1.76 16 21 N -0.79 -18.95 10.94 55.55 0.61 -18.34 16 22 Si 0.91 17.53 29.59 -169.99 -5.03 12.50 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 24 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 26 C -0.28 -6.80 9.90 -38.70 -0.38 -7.19 16 27 C 0.12 2.80 11.15 -17.68 -0.20 2.60 16 28 N -0.56 -13.72 7.85 -12.52 -0.10 -13.82 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.75 7.46 -51.93 -0.39 0.36 16 32 H 0.41 5.48 6.90 -40.82 -0.28 5.19 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.41 6.25 7.98 -40.82 -0.33 5.92 16 37 H 0.13 3.11 6.21 -52.48 -0.33 2.78 16 38 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -31.79 363.45 -9.69 -41.49 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -4.22 Total: 15.35 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.87 Total: -1.36 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.17 Total: -54.32 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.16 Total: -18.73 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.79 -9.69 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.128 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds