Wall clock time and date at job start Wed Apr 1 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46686 * 2 1 4 4 N 1.46499 * 109.47234 * 119.99740 * 2 1 3 5 5 C 1.34777 * 119.99770 * 275.00665 * 4 2 1 6 6 O 1.21705 * 120.00289 * 359.97438 * 5 4 2 7 7 C 1.46582 * 119.99932 * 180.02562 * 5 4 2 8 8 C 1.36652 * 125.46287 * 179.97438 * 7 5 4 9 9 C 1.37467 * 113.29749 * 179.97438 * 8 7 5 10 10 C 1.33814 * 115.10658 * 0.02562 * 9 8 7 11 11 S 1.70621 * 110.95066 * 359.75991 * 10 9 8 12 12 C 1.50692 * 109.47182 * 240.00201 * 2 1 3 13 13 O 1.21278 * 119.99925 * 239.99584 * 12 2 1 14 14 N 1.34775 * 120.00352 * 59.99735 * 12 2 1 15 15 C 1.39469 * 120.00218 * 175.18812 * 14 12 2 16 16 C 1.38597 * 119.58338 * 185.05161 * 15 14 12 17 17 C 1.40806 * 118.79554 * 179.77923 * 16 15 14 18 18 C 1.41544 * 120.99314 * 180.25805 * 17 16 15 19 19 H 1.08002 * 120.00088 * 203.80257 * 18 17 16 20 20 C 1.40032 * 120.00238 * 23.80564 * 18 17 16 21 21 N 1.30744 * 120.00006 * 17.14672 * 20 18 17 22 22 Si 1.86799 * 120.00189 * 197.14395 * 20 18 17 23 23 H 1.48498 * 109.46780 * 60.00008 * 22 20 18 24 24 H 1.48500 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47308 * 300.00187 * 22 20 18 26 26 C 1.41169 * 118.01170 * 0.48348 * 17 16 15 27 27 C 1.37598 * 119.01359 * 359.75423 * 26 17 16 28 28 N 1.32078 * 121.10518 * 0.02562 * 27 26 17 29 29 H 1.09000 * 109.46686 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47114 * 299.99717 * 1 2 3 31 31 H 1.08995 * 109.46945 * 60.00276 * 1 2 3 32 32 H 0.96992 * 120.00073 * 95.00360 * 4 2 1 33 33 H 1.08002 * 123.34407 * 359.94158 * 8 7 5 34 34 H 1.08004 * 122.44420 * 180.02562 * 9 8 7 35 35 H 1.07994 * 124.52864 * 179.97438 * 10 9 8 36 36 H 0.97000 * 119.99972 * 355.18068 * 14 12 2 37 37 H 1.08003 * 120.59878 * 359.97438 * 16 15 14 38 38 H 0.96992 * 120.00093 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.49678 * 179.78289 * 26 17 16 40 40 H 1.07993 * 119.44578 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8579 1.1628 2.4117 7 6 2.6362 -0.7089 3.5539 8 6 2.8094 -0.1384 4.7835 9 6 3.2811 -1.0175 5.7292 10 6 3.4883 -2.2650 5.2915 11 16 3.0882 -2.4060 3.6389 12 6 2.0324 -0.7103 -1.2304 13 8 2.7297 -1.6963 -1.1192 14 7 1.7068 -0.2499 -2.4545 15 6 2.2523 -0.8457 -3.5915 16 6 1.9955 -0.3006 -4.8396 17 6 2.5584 -0.9127 -5.9759 18 6 2.3311 -0.3919 -7.2723 19 1 2.4199 -1.0347 -8.1357 20 6 1.9911 0.9567 -7.4354 21 7 2.2048 1.8067 -6.4653 22 14 1.2323 1.5412 -9.0391 23 1 -0.0433 0.8186 -9.2755 24 1 0.9665 3.0000 -8.9583 25 1 2.1697 1.2697 -10.1583 26 6 3.3522 -2.0642 -5.7840 27 6 3.5468 -2.5352 -4.5058 28 7 3.0044 -1.9289 -3.4653 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2492 -1.6316 1.1527 33 1 2.5974 0.9000 4.9913 34 1 3.4707 -0.7228 6.7508 35 1 3.8560 -3.0752 5.9035 36 1 1.0931 0.4958 -2.5448 37 1 1.3775 0.5796 -4.9386 38 1 1.9690 2.7407 -6.5781 39 1 3.8005 -2.5677 -6.6277 40 1 4.1531 -3.4153 -4.3509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532435026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:07 Heat of formation + Delta-G solvation = -18.137220 kcal Electronic energy + Delta-G solvation = -26199.399117 eV Core-core repulsion = 22298.164009 eV Total energy + Delta-G solvation = -3901.235108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74110 -40.75361 -39.60862 -38.42485 -36.32842 -36.01173 -35.59487 -32.69531 -32.37547 -30.65297 -29.94171 -27.92160 -26.44793 -25.45542 -23.87589 -23.42114 -22.21663 -21.33943 -20.49345 -19.86828 -19.52380 -18.43223 -17.60856 -17.27739 -16.99367 -16.78201 -16.45636 -16.13089 -16.07698 -15.99879 -15.67918 -15.08182 -14.77949 -14.64184 -14.40530 -14.28424 -13.96083 -13.70480 -13.58580 -13.42859 -13.21720 -13.18445 -12.93002 -12.73969 -12.64417 -12.07319 -11.96071 -11.92065 -11.54894 -11.35060 -11.15880 -11.09737 -10.48938 -9.96430 -9.88790 -9.63235 -9.57261 -8.90489 -8.66398 -6.56743 -0.52389 0.46871 0.68631 0.93583 0.99610 1.36772 1.41570 1.51469 1.54635 1.60796 1.74564 2.08557 2.19621 2.23165 2.79088 3.34272 3.68219 3.73199 3.92790 4.01874 4.13453 4.17471 4.34431 4.53728 4.54661 4.69000 4.74045 4.81208 4.91648 5.00639 5.05935 5.09639 5.10737 5.20199 5.21342 5.36009 5.46832 5.59203 5.88989 6.09397 6.22780 6.40476 6.54385 6.77856 6.81898 6.90562 7.13048 7.79413 8.24754 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.002187 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.674988 B =12802.721603 C =13674.334237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.118 0.882 4 N -0.707 5.707 5 C 0.595 3.405 6 O -0.563 6.563 7 C -0.306 4.306 8 C -0.051 4.051 9 C -0.158 4.158 10 C -0.215 4.215 11 S 0.215 5.785 12 C 0.499 3.501 13 O -0.512 6.512 14 N -0.643 5.643 15 C 0.333 3.667 16 C -0.259 4.259 17 C 0.113 3.887 18 C -0.483 4.483 19 H 0.085 0.915 20 C 0.041 3.959 21 N -0.810 5.810 22 Si 0.986 3.014 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.260 1.260 26 C -0.298 4.298 27 C 0.115 3.885 28 N -0.577 5.577 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.424 0.576 37 H 0.125 0.875 38 H 0.293 0.707 39 H 0.115 0.885 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 -2.741 19.089 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.027 3.973 3 H 0.136 0.864 4 N -0.359 5.359 5 C 0.383 3.617 6 O -0.444 6.444 7 C -0.426 4.426 8 C -0.086 4.086 9 C -0.188 4.188 10 C -0.352 4.352 11 S 0.482 5.518 12 C 0.285 3.715 13 O -0.385 6.385 14 N -0.290 5.290 15 C 0.108 3.892 16 C -0.285 4.285 17 C 0.105 3.895 18 C -0.514 4.514 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.435 5.435 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.322 4.322 27 C -0.039 4.039 28 N -0.297 5.297 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.172 0.828 34 H 0.191 0.809 35 H 0.218 0.782 36 H 0.263 0.737 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.563 -3.916 19.151 19.715 hybrid contribution -0.321 1.765 -0.712 1.930 sum -2.884 -2.150 18.439 18.787 Atomic orbital electron populations 1.22131 0.90381 1.03823 1.04802 1.20794 0.97361 0.97387 0.81786 0.86396 1.45638 1.67245 1.14687 1.08351 1.17202 0.76558 0.85732 0.82162 1.90795 1.52302 1.16077 1.85275 1.24499 1.19032 1.00453 0.98576 1.21059 0.95464 1.01925 0.90154 1.20292 1.03901 0.92180 1.02446 1.25820 1.06344 1.03096 0.99985 1.83369 1.58194 1.03931 1.06316 1.21100 0.80655 0.84884 0.84887 1.90753 1.36204 1.25489 1.86016 1.43288 1.46753 1.35455 1.03535 1.18368 0.93917 0.91335 0.85591 1.21519 1.10187 1.06134 0.90612 1.17996 0.87300 0.90334 0.93858 1.19846 1.42676 0.95643 0.93207 0.89740 1.26815 0.92560 0.96157 1.02177 1.69797 1.33464 1.05076 1.35129 0.85183 0.79443 0.77733 0.76999 1.18322 1.19059 1.18467 1.22081 1.08522 1.03864 0.97693 1.22211 0.96063 0.97722 0.87901 1.67320 1.16891 1.11222 1.34292 0.91382 0.90237 0.88868 0.75342 0.82843 0.80878 0.78219 0.73714 0.85741 0.89581 0.86655 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.38 71.99 0.68 -2.66 16 2 C 0.14 3.76 2.99 44.25 0.13 3.89 16 3 H 0.12 3.29 7.58 -2.39 -0.02 3.27 16 4 N -0.71 -19.50 4.95 -450.16 -2.23 -21.73 16 5 C 0.60 16.77 7.75 86.42 0.67 17.44 16 6 O -0.56 -18.66 16.50 -4.36 -0.07 -18.73 16 7 C -0.31 -6.98 6.45 24.08 0.16 -6.83 16 8 C -0.05 -0.98 10.01 21.72 0.22 -0.76 16 9 C -0.16 -2.10 10.15 21.08 0.21 -1.89 16 10 C -0.21 -2.64 10.92 66.81 0.73 -1.91 16 11 S 0.21 3.71 22.16 -56.49 -1.25 2.46 16 12 C 0.50 17.97 7.18 87.65 0.63 18.60 16 13 O -0.51 -22.14 14.09 -3.02 -0.04 -22.18 16 14 N -0.64 -24.15 5.31 -308.67 -1.64 -25.79 16 15 C 0.33 15.87 7.42 132.75 0.98 16.85 16 16 C -0.26 -13.04 8.62 22.98 0.20 -12.84 16 17 C 0.11 5.95 5.60 -21.12 -0.12 5.83 16 18 C -0.48 -24.58 9.12 23.52 0.21 -24.37 16 19 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 20 C 0.04 1.91 5.19 85.29 0.44 2.35 16 21 N -0.81 -39.09 10.94 21.84 0.24 -38.85 16 22 Si 0.99 35.28 29.59 68.60 2.03 37.31 16 23 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 24 H -0.27 -8.98 7.11 99.48 0.71 -8.28 16 25 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 26 C -0.30 -14.51 9.90 22.84 0.23 -14.29 16 27 C 0.11 5.40 11.15 84.50 0.94 6.34 16 28 N -0.58 -28.84 7.85 -193.53 -1.52 -30.36 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.70 7.46 -2.39 -0.02 1.68 16 32 H 0.41 11.13 6.90 -92.71 -0.64 10.49 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.42 12.89 7.98 -92.71 -0.74 12.15 16 37 H 0.12 6.20 6.21 -2.91 -0.02 6.19 16 38 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 39 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 40 H 0.15 6.05 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -69.51 363.45 1.57 -67.95 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.26 Total: 44.16 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.31 Total: 5.76 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -5.15 Total: -116.72 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.11 Total: -40.91 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.25 Total: 2.46 kcal Total: -69.51 1.57 -67.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.808 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds