Wall clock time and date at job start Wed Apr 1 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00199 * 2 1 4 4 C 1.50700 * 109.47571 * 269.99831 * 3 2 1 5 5 H 1.08003 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00404 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00090 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00056 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46789 * 60.00392 * 8 6 4 10 10 H 1.48505 * 109.46976 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47233 * 300.00071 * 8 6 4 12 12 C 1.34783 * 119.99726 * 180.02562 * 2 1 3 13 13 O 1.21378 * 119.99663 * 183.62175 * 12 2 1 14 14 C 1.49240 * 120.00204 * 3.62005 * 12 2 1 15 15 O 1.21417 * 119.99819 * 354.16182 * 14 12 2 16 16 N 1.34770 * 119.99973 * 174.16938 * 14 12 2 17 17 C 1.39220 * 120.00296 * 179.97438 * 16 14 12 18 18 C 1.34682 * 125.93727 * 179.97438 * 17 16 14 19 19 N 1.31210 * 115.62157 * 179.77102 * 18 17 16 20 20 C 1.30196 * 117.15265 * 0.48572 * 19 18 17 21 21 C 1.47765 * 125.39804 * 179.81098 * 20 19 18 22 22 C 1.39606 * 120.14747 * 359.69879 * 21 20 19 23 23 C 1.37946 * 119.85211 * 180.02562 * 22 21 20 24 24 C 1.38368 * 120.14527 * 359.97438 * 23 22 21 25 25 C 1.38359 * 120.30132 * 0.28353 * 24 23 22 26 26 C 1.37949 * 120.14690 * 359.44312 * 25 24 23 27 27 S 1.76161 * 109.20892 * 359.54791 * 20 19 18 28 28 H 1.08994 * 109.47173 * 263.99270 * 1 2 3 29 29 H 1.08999 * 109.47182 * 23.99401 * 1 2 3 30 30 H 1.09007 * 109.46840 * 143.99199 * 1 2 3 31 31 H 1.08998 * 109.47036 * 30.00107 * 3 2 1 32 32 H 1.09006 * 109.47068 * 149.99694 * 3 2 1 33 33 H 0.96994 * 119.99977 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00444 * 359.97438 * 16 14 12 35 35 H 1.08010 * 122.19087 * 0.03205 * 18 17 16 36 36 H 1.08001 * 120.07117 * 359.97438 * 22 21 20 37 37 H 1.08001 * 119.92903 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.84695 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.92471 * 179.69963 * 25 24 23 40 40 H 1.07998 * 120.07906 * 180.28123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.1392 3.5948 -4.1335 10 1 4.1796 4.7035 -3.4338 11 1 4.2396 2.3829 -4.1343 12 6 2.1389 -1.1673 -0.0005 13 8 3.3508 -1.1683 0.0659 14 6 1.3949 -2.4584 -0.0827 15 8 0.1814 -2.4634 -0.0422 16 7 2.0700 -3.6187 -0.2017 17 6 1.3760 -4.8233 -0.2779 18 6 1.9266 -6.0465 -0.3984 19 7 1.0798 -7.0475 -0.4476 20 6 -0.1878 -6.7570 -0.3856 21 6 -1.2934 -7.7364 -0.4290 22 6 -1.0182 -9.0995 -0.5517 23 6 -2.0551 -10.0084 -0.5921 24 6 -3.3656 -9.5717 -0.5109 25 6 -3.6456 -8.2217 -0.3945 26 6 -2.6180 -7.3026 -0.3472 27 16 -0.3758 -5.0121 -0.2341 28 1 -0.3633 -0.1075 1.0220 29 1 -0.3633 0.9388 -0.4179 30 1 -0.3633 -0.8314 -0.6042 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0303 4.4439 -0.8503 34 1 3.0394 -3.6147 -0.2344 35 1 2.9955 -6.1941 -0.4469 36 1 0.0042 -9.4416 -0.6156 37 1 -1.8437 -11.0633 -0.6866 38 1 -4.1737 -10.2876 -0.5426 39 1 -4.6708 -7.8872 -0.3365 40 1 -2.8376 -6.2495 -0.2518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549309610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:54 Heat of formation + Delta-G solvation = 20.857774 kcal Electronic energy + Delta-G solvation = -25872.870300 eV Core-core repulsion = 21973.326141 eV Total energy + Delta-G solvation = -3899.544159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90379 -39.89444 -38.96389 -38.19625 -35.97768 -34.67398 -32.68921 -32.21420 -31.27587 -28.94735 -28.12362 -26.44496 -25.57117 -24.36220 -23.01402 -22.57696 -22.25976 -20.68999 -19.42758 -18.46886 -17.66140 -16.86434 -16.75196 -16.61338 -16.00388 -15.92871 -15.54777 -15.13199 -14.99101 -14.78101 -14.49861 -14.12179 -13.89667 -13.72399 -13.69199 -13.30116 -13.01485 -12.59528 -12.29722 -12.18540 -11.84956 -11.57896 -11.51266 -11.42861 -11.35698 -11.14001 -10.89615 -10.66407 -10.30791 -9.82819 -9.76536 -9.62311 -9.27872 -9.17330 -9.07438 -8.56560 -8.03381 -7.90291 -6.18358 -4.24808 0.02269 0.87727 1.08646 1.14212 1.53244 1.69725 2.38562 2.73446 3.24896 3.29396 3.31658 3.47020 3.58474 3.76933 3.91487 4.32760 4.56069 4.59096 4.63738 4.78843 4.84458 4.96738 5.13757 5.16502 5.23981 5.48680 5.58363 5.71686 5.82488 5.93979 5.99848 6.13970 6.18028 6.21243 6.38570 6.56806 6.60983 6.78654 7.13114 7.22867 7.48512 7.56823 7.76010 7.99067 8.02494 8.40878 8.78762 9.40716 10.89747 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.002102 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.621271 B =13319.455318 C =13607.150850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.556 5.556 3 C 0.241 3.759 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.501 3.499 13 O -0.520 6.520 14 C 0.500 3.500 15 O -0.487 6.487 16 N -0.604 5.604 17 C 0.013 3.987 18 C -0.012 4.012 19 N -0.438 5.438 20 C 0.036 3.964 21 C -0.012 4.012 22 C -0.079 4.079 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.103 4.103 27 S 0.216 5.784 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.433 0.567 35 H 0.177 0.823 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.405 -23.491 1.856 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.287 5.287 3 C 0.123 3.877 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.281 3.719 13 O -0.397 6.397 14 C 0.283 3.717 15 O -0.362 6.362 16 N -0.251 5.251 17 C -0.206 4.206 18 C -0.168 4.168 19 N -0.151 5.151 20 C -0.237 4.237 21 C -0.015 4.015 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.124 4.124 27 S 0.469 5.531 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.274 0.726 35 H 0.194 0.806 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.147 -22.942 2.030 26.520 hybrid contribution 1.726 0.402 -1.026 2.048 sum -11.421 -22.540 1.004 25.288 Atomic orbital electron populations 1.22259 0.79356 1.04155 1.01917 1.48154 1.07779 1.06625 1.66125 1.19584 0.92859 0.77021 0.98240 1.21314 1.37459 1.06856 0.91746 0.92280 1.24931 0.95052 0.96155 0.97759 1.69913 1.37761 1.14313 1.30937 0.86495 0.78488 0.77918 0.84188 1.20091 1.21024 1.20086 1.19124 0.87406 0.83862 0.81499 1.90772 1.12763 1.86326 1.49887 1.21398 0.87956 0.85952 0.76345 1.90611 1.13633 1.85245 1.46676 1.42629 1.11793 1.02019 1.68622 1.23736 0.97525 0.90184 1.09203 1.21423 1.01266 0.84645 1.09501 1.66407 1.00673 1.33827 1.14149 1.25999 0.93479 0.96483 1.07760 1.17819 0.89765 0.91580 1.02342 1.21296 1.00168 0.91385 0.97203 1.21143 0.92578 0.99750 1.00484 1.21300 0.96815 0.95842 0.99185 1.21032 0.99055 0.93064 1.00322 1.21199 0.91390 1.00003 0.99795 1.85714 0.98462 1.00808 1.68129 0.92984 0.90753 0.89057 0.93917 0.93161 0.92399 0.72601 0.80600 0.84794 0.85549 0.85787 0.85409 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.55 59.85 0.57 1.69 16 2 N -0.56 -11.60 2.86 -183.55 -0.52 -12.12 16 3 C 0.24 6.03 5.16 -5.20 -0.03 6.00 16 4 C -0.54 -14.57 9.39 -34.44 -0.32 -14.89 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.50 9.98 7.73 -11.68 -0.09 9.89 16 13 O -0.52 -11.64 16.04 5.47 0.09 -11.55 16 14 C 0.50 8.14 7.73 -11.69 -0.09 8.05 16 15 O -0.49 -7.89 10.73 5.44 0.06 -7.83 16 16 N -0.60 -8.23 5.40 -11.10 -0.06 -8.29 16 17 C 0.01 0.17 7.24 -15.45 -0.11 0.05 16 18 C -0.01 -0.14 11.29 -19.08 -0.22 -0.36 16 19 N -0.44 -5.63 10.12 -11.19 -0.11 -5.74 16 20 C 0.04 0.45 7.34 -14.35 -0.11 0.34 16 21 C -0.01 -0.12 5.87 -104.98 -0.62 -0.74 16 22 C -0.08 -0.75 9.68 -39.18 -0.38 -1.13 16 23 C -0.12 -0.91 10.03 -39.64 -0.40 -1.30 16 24 C -0.11 -0.77 10.04 -39.49 -0.40 -1.16 16 25 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 26 C -0.10 -0.94 9.61 -39.17 -0.38 -1.32 16 27 S 0.22 2.70 19.59 -107.50 -2.11 0.60 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 30 H 0.09 1.49 5.35 -51.93 -0.28 1.21 16 31 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.05 1.39 7.38 -51.93 -0.38 1.00 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.43 5.21 8.30 -40.82 -0.34 4.87 16 35 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.13 1.25 7.82 -52.49 -0.41 0.84 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 1.03 7.30 -52.49 -0.38 0.65 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -31.58 363.77 -8.80 -40.38 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.29 Total: 2.15 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.05 Total: 5.53 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.04 Total: -50.90 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.15 Total: -19.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.11 Total: 0.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.58 -8.80 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549309610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.242 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds