Wall clock time and date at job start Wed Apr 1 2020 02:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00199 * 2 1 4 4 C 1.50700 * 109.47571 * 269.99831 * 3 2 1 5 5 H 1.08003 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00404 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00090 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00056 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46789 * 60.00392 * 8 6 4 10 10 H 1.48505 * 109.46976 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47233 * 300.00071 * 8 6 4 12 12 C 1.34783 * 119.99726 * 180.02562 * 2 1 3 13 13 O 1.21378 * 119.99663 * 183.62175 * 12 2 1 14 14 C 1.49240 * 120.00204 * 3.62005 * 12 2 1 15 15 O 1.21417 * 119.99819 * 354.16182 * 14 12 2 16 16 N 1.34770 * 119.99973 * 174.16938 * 14 12 2 17 17 C 1.39220 * 120.00296 * 179.97438 * 16 14 12 18 18 C 1.34682 * 125.93727 * 179.97438 * 17 16 14 19 19 N 1.31210 * 115.62157 * 179.77102 * 18 17 16 20 20 C 1.30196 * 117.15265 * 0.48572 * 19 18 17 21 21 C 1.47765 * 125.39804 * 179.81098 * 20 19 18 22 22 C 1.39606 * 120.14747 * 359.69879 * 21 20 19 23 23 C 1.37946 * 119.85211 * 180.02562 * 22 21 20 24 24 C 1.38368 * 120.14527 * 359.97438 * 23 22 21 25 25 C 1.38359 * 120.30132 * 0.28353 * 24 23 22 26 26 C 1.37949 * 120.14690 * 359.44312 * 25 24 23 27 27 S 1.76161 * 109.20892 * 359.54791 * 20 19 18 28 28 H 1.08994 * 109.47173 * 263.99270 * 1 2 3 29 29 H 1.08999 * 109.47182 * 23.99401 * 1 2 3 30 30 H 1.09007 * 109.46840 * 143.99199 * 1 2 3 31 31 H 1.08998 * 109.47036 * 30.00107 * 3 2 1 32 32 H 1.09006 * 109.47068 * 149.99694 * 3 2 1 33 33 H 0.96994 * 119.99977 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00444 * 359.97438 * 16 14 12 35 35 H 1.08010 * 122.19087 * 0.03205 * 18 17 16 36 36 H 1.08001 * 120.07117 * 359.97438 * 22 21 20 37 37 H 1.08001 * 119.92903 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.84695 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.92471 * 179.69963 * 25 24 23 40 40 H 1.07998 * 120.07906 * 180.28123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.1392 3.5948 -4.1335 10 1 4.1796 4.7035 -3.4338 11 1 4.2396 2.3829 -4.1343 12 6 2.1389 -1.1673 -0.0005 13 8 3.3508 -1.1683 0.0659 14 6 1.3949 -2.4584 -0.0827 15 8 0.1814 -2.4634 -0.0422 16 7 2.0700 -3.6187 -0.2017 17 6 1.3760 -4.8233 -0.2779 18 6 1.9266 -6.0465 -0.3984 19 7 1.0798 -7.0475 -0.4476 20 6 -0.1878 -6.7570 -0.3856 21 6 -1.2934 -7.7364 -0.4290 22 6 -1.0182 -9.0995 -0.5517 23 6 -2.0551 -10.0084 -0.5921 24 6 -3.3656 -9.5717 -0.5109 25 6 -3.6456 -8.2217 -0.3945 26 6 -2.6180 -7.3026 -0.3472 27 16 -0.3758 -5.0121 -0.2341 28 1 -0.3633 -0.1075 1.0220 29 1 -0.3633 0.9388 -0.4179 30 1 -0.3633 -0.8314 -0.6042 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0303 4.4439 -0.8503 34 1 3.0394 -3.6147 -0.2344 35 1 2.9955 -6.1941 -0.4469 36 1 0.0042 -9.4416 -0.6156 37 1 -1.8437 -11.0633 -0.6866 38 1 -4.1737 -10.2876 -0.5426 39 1 -4.6708 -7.8872 -0.3365 40 1 -2.8376 -6.2495 -0.2518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549309610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:53 Heat of formation + Delta-G solvation = 1.204472 kcal Electronic energy + Delta-G solvation = -25873.722531 eV Core-core repulsion = 21973.326141 eV Total energy + Delta-G solvation = -3900.396390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22979 -40.81334 -39.94206 -39.46114 -37.39673 -36.11610 -34.70340 -32.96081 -31.88836 -30.28305 -29.69571 -27.83256 -26.76997 -25.87489 -24.04322 -23.54640 -23.28482 -21.82901 -20.63825 -19.47482 -18.91114 -18.78818 -18.02237 -17.54076 -17.37733 -17.18331 -16.86370 -16.35750 -16.00103 -15.95335 -15.74390 -15.22553 -14.99903 -14.98411 -14.41836 -14.31498 -14.29355 -13.94262 -13.75490 -13.66765 -13.36789 -13.03080 -12.69234 -12.61695 -12.60938 -12.32825 -12.26258 -12.22118 -11.99924 -11.77808 -10.87891 -10.67555 -10.46273 -10.41814 -10.14882 -9.89145 -9.68569 -8.87229 -8.27464 -6.42488 -0.91192 -0.08572 0.08408 0.47864 0.52955 0.65173 1.10752 1.38426 1.40988 1.48988 1.76293 2.03977 2.32095 2.45034 2.92463 3.01574 3.04296 3.14123 3.85572 4.03733 4.04267 4.13392 4.30591 4.33633 4.47061 4.55752 4.62145 4.66105 4.81079 4.91430 5.00563 5.09703 5.12798 5.15600 5.34118 5.50421 5.52718 5.54663 5.59446 5.67999 5.94745 6.02476 6.17453 6.41239 6.61128 6.62661 6.84489 7.27888 8.79989 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.002102 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.621271 B =13319.455318 C =13607.150850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.566 5.566 3 C 0.255 3.745 4 C -0.550 4.550 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.497 3.503 13 O -0.552 6.552 14 C 0.511 3.489 15 O -0.489 6.489 16 N -0.590 5.590 17 C -0.016 4.016 18 C 0.003 3.997 19 N -0.460 5.460 20 C 0.052 3.948 21 C -0.044 4.044 22 C -0.089 4.089 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.111 4.111 27 S 0.206 5.794 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.016 0.984 33 H 0.270 0.730 34 H 0.440 0.560 35 H 0.201 0.799 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -25.735 0.868 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.297 5.297 3 C 0.135 3.865 4 C -0.588 4.588 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.279 3.721 13 O -0.432 6.432 14 C 0.293 3.707 15 O -0.364 6.364 16 N -0.237 5.237 17 C -0.233 4.233 18 C -0.153 4.153 19 N -0.173 5.173 20 C -0.222 4.222 21 C -0.047 4.047 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.132 4.132 27 S 0.461 5.539 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.282 0.718 35 H 0.217 0.783 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.047 -25.221 1.045 29.387 hybrid contribution 2.193 0.858 -0.678 2.451 sum -12.854 -24.363 0.368 27.548 Atomic orbital electron populations 1.22408 0.76925 1.04566 1.03386 1.48110 1.09215 1.05817 1.66528 1.19100 0.91710 0.78817 0.96910 1.21580 1.37639 1.07098 0.92532 0.92650 1.25808 0.94680 0.96199 1.01993 1.70022 1.38337 1.14741 1.33043 0.85464 0.78792 0.77502 0.79069 1.18762 1.20280 1.20062 1.19667 0.87240 0.84955 0.80261 1.90742 1.14320 1.87142 1.50979 1.20399 0.87587 0.85302 0.77438 1.90607 1.13213 1.85256 1.47330 1.42313 1.12006 1.01532 1.67847 1.23750 0.97641 0.89937 1.12016 1.21820 1.02355 0.84039 1.07077 1.66505 1.01017 1.34022 1.15739 1.26399 0.93868 0.96462 1.05426 1.18004 0.89945 0.91877 1.04924 1.21397 1.00718 0.91328 0.97647 1.21462 0.92413 1.00658 0.99550 1.21725 0.97389 0.96217 0.96963 1.21390 0.99799 0.93175 0.99329 1.21367 0.91283 1.00689 0.99837 1.85655 0.98612 1.01377 1.68296 0.91071 0.90793 0.88020 0.94576 0.96618 0.92153 0.71841 0.78254 0.85330 0.83144 0.82734 0.82950 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.31 9.55 127.77 1.22 3.53 16 2 N -0.57 -24.10 2.86 -852.98 -2.44 -26.54 16 3 C 0.25 13.20 5.16 85.63 0.44 13.64 16 4 C -0.55 -30.51 9.39 25.60 0.24 -30.27 16 5 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 8 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.50 20.22 7.73 87.20 0.67 20.90 16 13 O -0.55 -25.56 16.04 -3.33 -0.05 -25.62 16 14 C 0.51 16.59 7.73 87.21 0.67 17.27 16 15 O -0.49 -15.56 10.73 -3.46 -0.04 -15.60 16 16 N -0.59 -15.92 5.40 -307.38 -1.66 -17.58 16 17 C -0.02 -0.39 7.24 82.70 0.60 0.20 16 18 C 0.00 0.08 11.29 83.97 0.95 1.03 16 19 N -0.46 -11.49 10.12 -189.33 -1.92 -13.41 16 20 C 0.05 1.24 7.34 87.46 0.64 1.88 16 21 C -0.04 -0.90 5.87 -20.10 -0.12 -1.02 16 22 C -0.09 -1.58 9.68 22.53 0.22 -1.36 16 23 C -0.12 -1.51 10.03 22.23 0.22 -1.28 16 24 C -0.10 -1.06 10.04 22.33 0.22 -0.83 16 25 C -0.12 -1.42 10.03 22.23 0.22 -1.20 16 26 C -0.11 -1.87 9.61 22.53 0.22 -1.65 16 27 S 0.21 5.08 19.59 -56.49 -1.11 3.97 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 30 H 0.10 3.23 5.35 -2.52 -0.01 3.22 16 31 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 32 H 0.02 0.91 7.38 -2.38 -0.02 0.90 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.44 10.52 8.30 -92.71 -0.77 9.75 16 35 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.13 2.33 7.82 -2.91 -0.02 2.30 16 37 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.13 1.98 7.30 -2.91 -0.02 1.95 16 Total: -1.00 -68.86 363.77 2.32 -66.54 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.33 Total: 14.16 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 6.89 Total: 22.01 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -5.73 Total: -110.90 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.09 Total: -41.21 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.11 Total: 3.97 kcal Total: -68.86 2.32 -66.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549309610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.742 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds