Wall clock time and date at job start Wed Apr 1 2020 02:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36231 * 117.00027 * 2 1 4 4 C 1.38675 * 122.58495 * 0.02562 * 3 2 1 5 5 C 1.33423 * 114.88453 * 179.73772 * 4 3 2 6 6 S 1.75871 * 109.65972 * 359.97438 * 5 4 3 7 7 C 1.33626 * 122.58817 * 179.73289 * 3 2 1 8 8 S 1.76194 * 125.19591 * 0.24384 * 7 3 2 9 9 O 1.42101 * 106.40553 * 263.53917 * 8 7 3 10 10 O 1.42101 * 106.40184 * 36.46154 * 8 7 3 11 11 N 1.65605 * 107.21995 * 150.00022 * 8 7 3 12 12 C 1.46925 * 120.62751 * 269.72081 * 11 8 7 13 13 C 1.53629 * 108.54033 * 126.36667 * 12 11 8 14 14 C 1.53038 * 109.24239 * 54.85659 * 13 12 11 15 15 C 1.53001 * 109.46004 * 178.48889 * 14 13 12 16 16 C 1.50699 * 109.47154 * 295.06421 * 15 14 13 17 17 H 1.08004 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99630 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00359 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99679 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46878 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47135 * 120.00045 * 20 18 16 23 23 H 1.48496 * 109.47051 * 240.00166 * 20 18 16 24 24 C 1.53041 * 109.53750 * 298.50995 * 14 13 12 25 25 C 1.46924 * 120.62980 * 89.99734 * 11 8 7 26 26 H 1.08998 * 109.47000 * 60.00701 * 1 2 3 27 27 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47731 * 300.00340 * 1 2 3 29 29 H 1.08001 * 122.55559 * 359.71294 * 4 3 2 30 30 H 1.08000 * 125.16949 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.58975 * 246.19876 * 12 11 8 32 32 H 1.09003 * 109.59226 * 6.62880 * 12 11 8 33 33 H 1.08999 * 109.63792 * 294.86033 * 13 12 11 34 34 H 1.09001 * 109.45830 * 174.73694 * 13 12 11 35 35 H 1.08998 * 109.45123 * 58.51961 * 14 13 12 36 36 H 1.09004 * 109.46960 * 55.06759 * 15 14 13 37 37 H 1.09007 * 109.46777 * 175.06627 * 15 14 13 38 38 H 0.97003 * 119.99759 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.49855 * 301.41778 * 24 14 13 40 40 H 1.08996 * 109.52548 * 181.33518 * 24 14 13 41 41 H 1.09001 * 109.58574 * 353.37598 * 25 11 8 42 42 H 1.09004 * 109.58097 * 113.65995 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3454 2.4097 0.0005 5 6 2.1050 3.5066 0.0060 6 16 3.8034 3.0502 0.0116 7 6 3.3774 1.3439 0.0052 8 16 4.5283 0.0098 0.0067 9 8 4.9015 -0.1967 1.3622 10 8 3.9633 -1.0084 -0.8077 11 7 5.8887 0.5351 -0.7780 12 6 6.0318 0.3565 -2.2293 13 6 6.3484 1.7208 -2.8606 14 6 7.5800 2.3192 -2.1769 15 6 7.9224 3.6611 -2.8273 16 6 8.3304 3.4352 -4.2603 17 1 8.3436 2.4346 -4.6667 18 6 8.6856 4.5061 -5.0529 19 7 8.6690 5.7245 -4.5581 20 14 9.1906 4.2262 -6.8295 21 1 9.1258 2.7754 -7.1398 22 1 8.2688 4.9658 -7.7285 23 1 10.5781 4.7148 -7.0325 24 6 7.2867 2.5332 -0.6902 25 6 6.9782 1.1832 -0.0352 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2662 2.4501 -0.0036 30 1 1.7333 4.5207 0.0076 31 1 6.8441 -0.3410 -2.4334 32 1 5.1012 -0.0320 -2.6432 33 1 5.4986 2.3908 -2.7305 34 1 6.5498 1.5909 -3.9239 35 1 8.4231 1.6371 -2.2862 36 1 7.0494 4.3131 -2.7964 37 1 8.7443 4.1285 -2.2849 38 1 8.9193 6.4778 -5.1157 39 1 6.4279 3.1955 -0.5804 40 1 8.1556 2.9813 -0.2083 41 1 6.6722 1.3403 0.9992 42 1 7.8654 0.5505 -0.0618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577218183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:17 Heat of formation + Delta-G solvation = -85.145040 kcal Electronic energy + Delta-G solvation = -26817.859564 eV Core-core repulsion = 23016.869978 eV Total energy + Delta-G solvation = -3800.989585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18161 -38.29258 -37.03900 -36.15141 -35.67551 -33.93271 -31.93826 -30.69809 -30.40255 -27.65135 -27.15771 -24.52109 -24.17997 -22.86961 -21.48293 -20.37209 -19.70294 -19.23793 -18.31570 -17.34579 -16.92383 -16.28740 -16.22545 -15.82275 -15.64093 -14.90487 -14.54652 -14.33806 -14.04062 -13.92035 -13.62129 -13.35295 -13.23624 -13.16649 -12.94530 -12.37460 -12.12031 -11.97684 -11.91133 -11.73140 -11.64723 -11.39164 -11.34467 -11.16732 -11.07460 -10.86422 -10.69199 -10.65651 -10.37120 -10.09401 -9.62208 -9.47122 -9.32062 -8.96508 -8.63992 -8.35244 -8.30143 -6.00294 -4.01462 0.35092 0.54324 1.25416 1.57394 2.22230 3.01003 3.15439 3.30127 3.38428 3.41858 3.82303 4.37845 4.45598 4.64104 4.78420 4.80846 4.83705 4.90260 5.17177 5.29540 5.34425 5.35881 5.46039 5.48966 5.59879 5.70735 5.79875 5.83851 5.91485 6.04797 6.19709 6.41681 6.45402 6.68906 6.70732 6.76798 7.01785 7.04854 7.14484 7.67896 7.82519 8.00146 8.43349 9.05430 9.62478 11.10947 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003458 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.793332 B = 8095.631335 C = 8584.079453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.234 3.766 4 C -0.221 4.221 5 C -0.153 4.153 6 S 0.251 5.749 7 C -0.840 4.840 8 S 2.723 3.277 9 O -0.958 6.958 10 O -0.945 6.945 11 N -0.993 5.993 12 C 0.118 3.882 13 C -0.120 4.120 14 C -0.078 4.078 15 C 0.027 3.973 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.131 4.131 25 C 0.117 3.883 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.152 0.848 30 H 0.178 0.822 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.258 0.742 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.449 -6.902 11.236 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.173 3.827 4 C -0.254 4.254 5 C -0.292 4.292 6 S 0.515 5.485 7 C -1.040 5.040 8 S 2.809 3.191 9 O -0.948 6.948 10 O -0.936 6.936 11 N -0.834 5.834 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.097 4.097 15 C -0.010 4.010 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.716 3.284 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.170 4.170 25 C -0.008 4.008 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.170 0.830 30 H 0.195 0.805 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.121 -6.924 11.565 19.521 hybrid contribution -1.675 0.282 -1.259 2.114 sum -15.796 -6.642 10.306 19.996 Atomic orbital electron populations 1.23205 0.77361 1.04750 1.01692 1.86299 1.22234 1.24804 1.87554 1.17151 0.89444 0.85537 0.90612 1.20342 1.01956 0.91113 1.12016 1.26054 0.98463 1.03129 1.01505 1.84452 1.03096 0.91722 1.69276 1.34853 1.12685 1.20785 1.35645 1.01175 0.71770 0.72814 0.73315 1.93560 1.82356 1.84240 1.34642 1.93566 1.77932 1.52754 1.69320 1.57686 1.31623 1.76126 1.17933 1.21748 1.02435 0.99209 0.77280 1.22006 0.98866 0.94149 1.00894 1.21143 0.96298 1.00449 0.91767 1.19137 0.96567 0.90372 0.94905 1.21297 1.44404 0.93071 0.96423 0.92489 1.25010 0.95855 0.95301 0.98296 1.69971 1.49043 0.98411 1.36161 0.86612 0.78152 0.78275 0.85407 1.19725 1.21183 1.21151 1.22094 1.01603 0.95186 0.98156 1.21597 0.89803 0.94908 0.94517 0.92070 0.87526 0.92280 0.83048 0.80492 0.90850 0.89826 0.92193 0.89745 0.92138 0.96613 0.96618 0.93184 0.92087 0.90872 0.89947 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.92 101.05 1.00 1.19 16 2 O -0.30 -3.89 9.65 -28.28 -0.27 -4.16 16 3 C 0.23 3.12 6.57 -41.04 -0.27 2.85 16 4 C -0.22 -2.26 9.16 -41.10 -0.38 -2.64 16 5 C -0.15 -1.51 11.22 29.05 0.33 -1.18 16 6 S 0.25 3.12 21.99 -107.50 -2.36 0.76 16 7 C -0.84 -12.20 6.50 29.12 0.19 -12.02 16 8 S 2.72 43.58 5.68 -107.50 -0.61 42.97 16 9 O -0.96 -16.96 16.73 -57.17 -0.96 -17.91 16 10 O -0.95 -16.95 15.97 -61.96 -0.99 -17.94 16 11 N -0.99 -14.75 3.28 -113.27 -0.37 -15.12 16 12 C 0.12 1.75 6.41 -3.48 -0.02 1.73 16 13 C -0.12 -2.06 5.21 -26.39 -0.14 -2.20 16 14 C -0.08 -1.45 2.10 -90.58 -0.19 -1.64 16 15 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 16 C -0.51 -13.65 8.39 -34.44 -0.29 -13.94 16 17 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.13 -2.03 5.36 -26.61 -0.14 -2.18 16 25 C 0.12 1.62 6.37 -3.71 -0.02 1.60 16 26 H 0.06 0.38 7.84 -51.93 -0.41 -0.03 16 27 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.34 7.85 -51.93 -0.41 -0.07 16 29 H 0.15 1.06 6.91 -52.49 -0.36 0.69 16 30 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.19 7.12 -51.93 -0.37 0.82 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.55 6.91 -51.93 -0.36 1.19 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -34.11 363.61 -10.46 -44.57 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.94 Total: -2.93 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -0.15 Total: -26.44 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.36 Total: -40.48 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -2.22 Total: -40.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 46.70 SS G_CDS: -2.98 Total: 43.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.11 -10.46 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577218183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.574 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds