Wall clock time and date at job start Wed Apr 1 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36231 * 117.00027 * 2 1 4 4 C 1.38675 * 122.58495 * 0.02562 * 3 2 1 5 5 C 1.33423 * 114.88453 * 179.73772 * 4 3 2 6 6 S 1.75871 * 109.65972 * 359.97438 * 5 4 3 7 7 C 1.33626 * 122.58817 * 179.73289 * 3 2 1 8 8 S 1.76194 * 125.19591 * 0.24384 * 7 3 2 9 9 O 1.42101 * 106.40553 * 263.53917 * 8 7 3 10 10 O 1.42101 * 106.40184 * 36.46154 * 8 7 3 11 11 N 1.65605 * 107.21995 * 150.00022 * 8 7 3 12 12 C 1.46925 * 120.62751 * 269.72081 * 11 8 7 13 13 C 1.53629 * 108.54033 * 126.36667 * 12 11 8 14 14 C 1.53038 * 109.24239 * 54.85659 * 13 12 11 15 15 C 1.53001 * 109.46004 * 178.48889 * 14 13 12 16 16 C 1.50699 * 109.47154 * 295.06421 * 15 14 13 17 17 H 1.08004 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99630 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00359 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99679 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46878 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47135 * 120.00045 * 20 18 16 23 23 H 1.48496 * 109.47051 * 240.00166 * 20 18 16 24 24 C 1.53041 * 109.53750 * 298.50995 * 14 13 12 25 25 C 1.46924 * 120.62980 * 89.99734 * 11 8 7 26 26 H 1.08998 * 109.47000 * 60.00701 * 1 2 3 27 27 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47731 * 300.00340 * 1 2 3 29 29 H 1.08001 * 122.55559 * 359.71294 * 4 3 2 30 30 H 1.08000 * 125.16949 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.58975 * 246.19876 * 12 11 8 32 32 H 1.09003 * 109.59226 * 6.62880 * 12 11 8 33 33 H 1.08999 * 109.63792 * 294.86033 * 13 12 11 34 34 H 1.09001 * 109.45830 * 174.73694 * 13 12 11 35 35 H 1.08998 * 109.45123 * 58.51961 * 14 13 12 36 36 H 1.09004 * 109.46960 * 55.06759 * 15 14 13 37 37 H 1.09007 * 109.46777 * 175.06627 * 15 14 13 38 38 H 0.97003 * 119.99759 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.49855 * 301.41778 * 24 14 13 40 40 H 1.08996 * 109.52548 * 181.33518 * 24 14 13 41 41 H 1.09001 * 109.58574 * 353.37598 * 25 11 8 42 42 H 1.09004 * 109.58097 * 113.65995 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3454 2.4097 0.0005 5 6 2.1050 3.5066 0.0060 6 16 3.8034 3.0502 0.0116 7 6 3.3774 1.3439 0.0052 8 16 4.5283 0.0098 0.0067 9 8 4.9015 -0.1967 1.3622 10 8 3.9633 -1.0084 -0.8077 11 7 5.8887 0.5351 -0.7780 12 6 6.0318 0.3565 -2.2293 13 6 6.3484 1.7208 -2.8606 14 6 7.5800 2.3192 -2.1769 15 6 7.9224 3.6611 -2.8273 16 6 8.3304 3.4352 -4.2603 17 1 8.3436 2.4346 -4.6667 18 6 8.6856 4.5061 -5.0529 19 7 8.6690 5.7245 -4.5581 20 14 9.1906 4.2262 -6.8295 21 1 9.1258 2.7754 -7.1398 22 1 8.2688 4.9658 -7.7285 23 1 10.5781 4.7148 -7.0325 24 6 7.2867 2.5332 -0.6902 25 6 6.9782 1.1832 -0.0352 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2662 2.4501 -0.0036 30 1 1.7333 4.5207 0.0076 31 1 6.8441 -0.3410 -2.4334 32 1 5.1012 -0.0320 -2.6432 33 1 5.4986 2.3908 -2.7305 34 1 6.5498 1.5909 -3.9239 35 1 8.4231 1.6371 -2.2862 36 1 7.0494 4.3131 -2.7964 37 1 8.7443 4.1285 -2.2849 38 1 8.9193 6.4778 -5.1157 39 1 6.4279 3.1955 -0.5804 40 1 8.1556 2.9813 -0.2083 41 1 6.6722 1.3403 0.9992 42 1 7.8654 0.5505 -0.0618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577218183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:16 Heat of formation + Delta-G solvation = -108.080408 kcal Electronic energy + Delta-G solvation = -26818.854116 eV Core-core repulsion = 23016.869978 eV Total energy + Delta-G solvation = -3801.984138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04470 -39.62843 -38.33095 -36.99599 -36.96730 -35.66822 -33.74934 -31.95860 -31.24556 -29.43070 -27.83558 -25.95432 -25.34330 -24.16912 -23.01977 -21.51494 -20.63503 -20.48284 -19.54639 -18.52830 -18.31922 -17.91285 -17.18791 -16.78859 -16.67068 -16.49821 -15.75202 -15.55509 -15.25913 -15.06104 -14.82244 -14.78400 -14.59244 -14.03244 -13.97009 -13.72513 -13.55963 -13.32115 -13.25325 -13.10611 -12.85169 -12.82185 -12.57755 -12.47378 -12.39410 -12.17571 -12.07885 -12.04239 -11.80968 -11.66909 -11.23240 -10.97657 -10.77717 -10.46661 -10.32730 -9.95575 -9.21545 -8.11818 -6.19290 -0.69773 -0.47702 0.31758 0.72990 1.37667 1.42017 1.44151 1.55429 1.90659 2.31431 2.46043 2.64109 3.22382 3.44642 3.64978 3.69525 4.03884 4.09712 4.13235 4.27015 4.31664 4.35427 4.44130 4.54106 4.57326 4.63861 4.65793 4.76120 4.83655 4.92214 5.00302 5.04541 5.13335 5.33232 5.40053 5.42228 5.48165 5.65752 5.68815 5.91330 5.98233 5.99183 6.37624 6.97871 7.48765 8.99911 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003458 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.793332 B = 8095.631335 C = 8584.079453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.325 6.325 3 C 0.232 3.768 4 C -0.224 4.224 5 C -0.131 4.131 6 S 0.215 5.785 7 C -0.871 4.871 8 S 2.734 3.266 9 O -0.982 6.982 10 O -0.972 6.972 11 N -0.992 5.992 12 C 0.124 3.876 13 C -0.114 4.114 14 C -0.070 4.070 15 C 0.034 3.966 16 C -0.523 4.523 17 H 0.063 0.937 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.953 3.047 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.127 4.127 25 C 0.118 3.882 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.189 0.811 30 H 0.215 0.785 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.060 0.940 36 H -0.008 1.008 37 H -0.011 1.011 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 -7.256 11.139 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.169 3.831 4 C -0.255 4.255 5 C -0.269 4.269 6 S 0.477 5.523 7 C -1.073 5.073 8 S 2.824 3.176 9 O -0.972 6.972 10 O -0.962 6.962 11 N -0.832 5.832 12 C -0.001 4.001 13 C -0.153 4.153 14 C -0.089 4.089 15 C -0.003 4.003 16 C -0.561 4.561 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.779 3.221 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.166 4.166 25 C -0.007 4.007 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.206 0.794 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.010 0.990 37 H 0.007 0.993 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.748 -7.328 11.474 20.817 hybrid contribution -1.298 0.439 -1.201 1.822 sum -17.046 -6.888 10.273 21.060 Atomic orbital electron populations 1.23614 0.74719 1.06473 1.03540 1.86270 1.25135 1.25221 1.87201 1.17583 0.89463 0.86718 0.89322 1.20665 1.03729 0.89744 1.11397 1.26499 0.96248 1.04850 0.99277 1.84512 1.06049 0.91090 1.70605 1.34537 1.13060 1.20890 1.38822 1.00480 0.71749 0.72878 0.72539 1.93520 1.82913 1.85049 1.35766 1.93522 1.78420 1.54589 1.69690 1.57586 1.31724 1.76172 1.17746 1.21696 1.03336 0.97862 0.77172 1.21891 0.97943 0.95442 1.00068 1.20982 0.96988 0.97348 0.93596 1.19020 0.94426 0.92698 0.94197 1.21727 1.43486 0.93255 0.97664 0.91915 1.25857 0.96131 0.95113 1.02618 1.70099 1.50404 0.99290 1.37782 0.85575 0.77597 0.78653 0.80286 1.18537 1.20912 1.20974 1.22019 1.02046 0.96489 0.96035 1.21671 0.90183 0.94010 0.94796 0.90450 0.86098 0.90123 0.79367 0.76812 0.89378 0.89183 0.92620 0.91126 0.92121 0.98981 0.99251 0.93171 0.91883 0.90280 0.88739 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.92 113.37 1.12 1.26 16 2 O -0.33 -8.13 9.65 -88.73 -0.86 -8.98 16 3 C 0.23 5.83 6.57 21.33 0.14 5.97 16 4 C -0.22 -3.90 9.16 21.28 0.19 -3.70 16 5 C -0.13 -2.20 11.22 66.73 0.75 -1.45 16 6 S 0.21 5.18 21.99 -56.49 -1.24 3.94 16 7 C -0.87 -24.81 6.50 66.77 0.43 -24.37 16 8 S 2.73 87.13 5.68 -56.49 -0.32 86.81 16 9 O -0.98 -34.82 16.73 -128.00 -2.14 -36.96 16 10 O -0.97 -34.90 15.97 -123.43 -1.97 -36.87 16 11 N -0.99 -28.87 3.28 -512.28 -1.68 -30.55 16 12 C 0.12 3.60 6.41 86.51 0.55 4.15 16 13 C -0.11 -3.92 5.21 30.82 0.16 -3.76 16 14 C -0.07 -2.63 2.10 -10.77 -0.02 -2.65 16 15 C 0.03 1.66 4.45 29.85 0.13 1.79 16 16 C -0.52 -28.11 8.39 25.60 0.21 -27.89 16 17 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 19 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 20 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 C -0.13 -3.90 5.36 30.67 0.16 -3.73 16 25 C 0.12 3.18 6.37 86.36 0.55 3.73 16 26 H 0.08 0.72 7.84 -2.39 -0.02 0.70 16 27 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 0.66 7.85 -2.39 -0.02 0.64 16 29 H 0.19 1.78 6.91 -2.91 -0.02 1.76 16 30 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 2.52 7.12 -2.39 -0.02 2.50 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.60 6.91 -2.39 -0.02 2.58 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.06 1.92 6.73 -2.39 -0.02 1.90 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 41 H 0.09 2.36 7.13 -2.39 -0.02 2.34 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -74.99 363.61 -0.02 -75.01 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.03 Total: 7.58 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 4.86 Total: -50.22 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.40 Total: -85.73 kcal Atomic # 8 Polarization: -77.84 SS G_CDS: -4.97 Total: -82.81 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 92.31 SS G_CDS: -1.56 Total: 90.75 kcal Total: -74.99 -0.02 -75.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577218183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.071 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds