Wall clock time and date at job start Wed Apr 1 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42105 * 110.54530 * 2 1 4 4 O 1.42101 * 110.54333 * 136.75172 * 2 1 3 5 5 C 1.76198 * 104.44778 * 248.37635 * 2 1 3 6 6 C 1.33389 * 125.20403 * 89.72233 * 5 2 1 7 7 C 1.38425 * 114.91918 * 179.86159 * 6 5 2 8 8 C 1.33384 * 114.92160 * 0.42416 * 7 6 5 9 9 C 1.50703 * 125.20124 * 179.74963 * 8 7 6 10 10 N 1.46503 * 109.46791 * 90.00513 * 9 8 7 11 11 C 1.34779 * 119.99760 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00378 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99915 * 180.02562 * 11 10 9 14 14 C 1.53008 * 109.47071 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46880 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47166 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47114 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99732 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99756 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47492 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46726 * 120.00318 * 21 19 17 24 24 H 1.48499 * 109.47090 * 239.99869 * 21 19 17 25 25 S 1.75881 * 109.59536 * 359.77373 * 8 7 6 26 26 H 1.09003 * 109.47393 * 51.62062 * 1 2 3 27 27 H 1.08994 * 109.47678 * 171.62679 * 1 2 3 28 28 H 1.09002 * 109.47051 * 291.62872 * 1 2 3 29 29 H 1.08000 * 122.54107 * 0.02562 * 6 5 2 30 30 H 1.08006 * 122.54185 * 180.19959 * 7 6 5 31 31 H 1.09003 * 109.47308 * 209.99935 * 9 8 7 32 32 H 1.08996 * 109.47552 * 329.99988 * 9 8 7 33 33 H 0.96989 * 120.00206 * 359.97438 * 10 9 8 34 34 H 1.09005 * 109.46963 * 299.99316 * 13 11 10 35 35 H 1.08998 * 109.47312 * 59.99776 * 13 11 10 36 36 H 1.08995 * 109.46682 * 299.99579 * 14 13 11 37 37 H 1.08998 * 109.47109 * 59.99807 * 14 13 11 38 38 H 1.09005 * 109.47717 * 299.99990 * 15 14 13 39 39 H 1.09007 * 109.47301 * 60.00105 * 15 14 13 40 40 H 1.08995 * 109.46734 * 300.00142 * 16 15 14 41 41 H 1.08998 * 109.46771 * 60.00195 * 16 15 14 42 42 H 0.96999 * 119.99934 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 0.9117 5 6 2.2536 -0.6288 -1.5862 6 6 2.4403 0.1095 -2.6813 7 6 2.7842 -0.6058 -3.8154 8 6 2.8681 -1.9259 -3.6433 9 6 3.2189 -2.9216 -4.7187 10 7 4.6704 -3.1177 -4.7479 11 6 5.2175 -3.9703 -5.6369 12 8 4.5081 -4.5755 -6.4125 13 6 6.7106 -4.1724 -5.6666 14 6 7.0668 -5.1833 -6.7586 15 6 8.5827 -5.3880 -6.7891 16 6 8.9389 -6.3993 -7.8806 17 6 10.4320 -6.6015 -7.9102 18 1 11.0636 -6.0628 -7.2193 19 6 10.9915 -7.4748 -8.8186 20 7 10.2222 -8.1310 -9.6595 21 14 12.8423 -7.7248 -8.8558 22 1 13.4776 -6.8758 -7.8163 23 1 13.1545 -9.1517 -8.5876 24 1 13.3661 -7.3464 -10.1928 25 16 2.5060 -2.3267 -1.9695 26 1 -0.3634 0.6380 -0.8056 27 1 -0.3634 -1.0166 -0.1496 28 1 -0.3633 0.3788 0.9553 29 1 2.3340 1.1843 -2.6824 30 1 2.9671 -0.1315 -4.7683 31 1 2.7281 -3.8719 -4.5082 32 1 2.8835 -2.5458 -5.6853 33 1 5.2378 -2.6334 -4.1280 34 1 7.2018 -3.2222 -5.8764 35 1 7.0455 -4.5490 -4.7001 36 1 6.5756 -6.1333 -6.5483 37 1 6.7318 -4.8071 -7.7252 38 1 9.0736 -4.4378 -6.9995 39 1 8.9181 -5.7640 -5.8224 40 1 8.4481 -7.3494 -7.6697 41 1 8.6035 -6.0237 -8.8473 42 1 10.6159 -8.7452 -10.2989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:49 Heat of formation + Delta-G solvation = -122.958270 kcal Electronic energy + Delta-G solvation = -23678.270970 eV Core-core repulsion = 19875.641680 eV Total energy + Delta-G solvation = -3802.629290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88970 -39.16952 -38.13060 -37.05537 -36.72177 -35.94993 -34.61297 -32.25960 -31.16374 -30.31439 -28.16177 -26.90495 -24.61110 -23.72206 -21.82326 -21.46703 -21.35193 -19.75647 -19.08168 -18.42484 -17.80020 -17.43177 -17.24159 -17.04416 -16.87498 -16.52417 -16.45052 -15.78559 -15.43823 -14.85963 -14.57115 -14.49639 -14.25917 -13.98631 -13.96386 -13.70495 -13.59071 -13.58065 -13.29000 -13.22997 -13.15434 -13.09086 -12.84306 -12.45623 -12.31813 -12.15237 -12.13910 -11.99253 -11.83678 -11.37732 -11.37551 -11.19271 -10.93406 -10.55531 -10.26361 -10.24247 -9.65019 -8.18892 -6.30858 -0.97844 -0.64149 0.29482 0.67307 1.32958 1.40503 1.41208 1.54748 1.59316 1.85298 2.25520 2.42108 2.91171 3.13960 3.26710 3.34985 3.81325 4.01846 4.06771 4.08336 4.15243 4.15738 4.32489 4.43860 4.51229 4.68132 4.68514 4.74251 4.84889 4.88156 4.94130 4.94496 5.19674 5.22200 5.25866 5.33212 5.39925 5.57596 5.78586 5.88453 6.25642 6.43221 6.87791 7.17421 7.38819 8.93441 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.001463 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.061792 B =19132.390179 C =19565.435370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.523 3.477 3 O -0.967 6.967 4 O -0.976 6.976 5 C -0.780 4.780 6 C 0.002 3.998 7 C -0.136 4.136 8 C -0.167 4.167 9 C 0.185 3.815 10 N -0.720 5.720 11 C 0.517 3.483 12 O -0.581 6.581 13 C -0.129 4.129 14 C -0.096 4.096 15 C -0.097 4.097 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.065 0.935 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.279 1.279 25 S 0.211 5.789 26 H 0.159 0.841 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.179 0.821 30 H 0.171 0.829 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.059 0.941 40 H -0.015 1.015 41 H -0.014 1.014 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.164 22.503 21.639 40.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.703 3.297 3 O -0.964 6.964 4 O -0.973 6.973 5 C -0.980 4.980 6 C -0.032 4.032 7 C -0.168 4.168 8 C -0.287 4.287 9 C 0.060 3.940 10 N -0.374 5.374 11 C 0.305 3.695 12 O -0.461 6.461 13 C -0.169 4.169 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.020 4.020 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.204 1.204 25 S 0.479 5.521 26 H 0.178 0.822 27 H 0.170 0.830 28 H 0.174 0.826 29 H 0.196 0.804 30 H 0.188 0.812 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.004 0.996 41 H 0.004 0.996 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.137 20.806 22.441 39.603 hybrid contribution 0.727 0.554 -1.750 1.974 sum -24.411 21.360 20.691 38.474 Atomic orbital electron populations 1.30047 1.18790 1.14398 1.14471 1.04544 0.80160 0.73059 0.71936 1.93556 1.79863 1.37247 1.85762 1.93565 1.79932 1.62471 1.61360 1.35687 1.28615 1.07135 1.26592 1.20314 0.91132 1.02464 0.89294 1.20693 1.02423 0.92101 1.01624 1.25012 1.06654 0.98678 0.98375 1.19722 0.81634 0.96552 0.96064 1.45995 1.07585 1.45575 1.38219 1.21147 0.91587 0.77683 0.79047 1.90713 1.64546 1.48984 1.41839 1.21687 0.90387 1.02624 1.02173 1.21248 0.95821 0.98308 0.98032 1.21458 0.94088 0.99045 0.98842 1.19069 0.95194 0.93827 0.93860 1.21796 0.93830 1.24482 1.17904 0.91649 1.26075 1.03661 0.95483 0.95105 1.70135 1.37339 1.28629 1.21631 0.85338 0.78973 0.78072 0.78274 1.18201 1.20491 1.20433 1.84537 1.64876 1.01372 1.01344 0.82224 0.83024 0.82588 0.80407 0.81151 0.90594 0.88777 0.74663 0.86223 0.86467 0.93769 0.93616 0.92072 0.92200 0.99650 0.99569 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 0.52 10.79 113.37 1.22 1.75 16 2 S 2.52 25.22 5.94 -56.49 -0.34 24.88 16 3 O -0.97 -15.82 17.64 -127.65 -2.25 -18.07 16 4 O -0.98 -17.82 17.77 -127.65 -2.27 -20.09 16 5 C -0.78 -8.44 6.22 66.72 0.42 -8.02 16 6 C 0.00 0.02 9.78 21.22 0.21 0.23 16 7 C -0.14 -1.24 10.05 21.22 0.21 -1.03 16 8 C -0.17 -1.98 5.88 24.59 0.14 -1.84 16 9 C 0.19 2.80 6.16 85.63 0.53 3.33 16 10 N -0.72 -12.09 5.55 -466.78 -2.59 -14.68 16 11 C 0.52 12.97 7.83 87.66 0.69 13.65 16 12 O -0.58 -20.26 15.98 -3.03 -0.05 -20.31 16 13 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 14 C -0.10 -3.39 4.50 30.60 0.14 -3.25 16 15 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16 16 C 0.02 0.97 4.97 29.85 0.15 1.12 16 17 C -0.54 -31.57 9.11 25.60 0.23 -31.33 16 18 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 20 N -0.94 -58.95 13.29 21.45 0.28 -58.67 16 21 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 S 0.21 2.71 23.13 -56.49 -1.31 1.40 16 26 H 0.16 -0.81 8.14 -2.39 -0.02 -0.83 16 27 H 0.15 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.16 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.18 0.77 8.02 -2.91 -0.02 0.75 16 30 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.42 4.86 8.46 -92.72 -0.78 4.08 16 34 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 40 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -88.09 388.12 -1.52 -89.61 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: 0.24 Total: 0.88 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.73 Total: -31.96 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -2.30 Total: -73.34 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -4.57 Total: -58.47 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 27.93 SS G_CDS: -1.64 Total: 26.29 kcal Total: -88.09 -1.52 -89.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.349 kcal (2) G-P(sol) polarization free energy of solvation -88.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds