Wall clock time and date at job start Wed Apr 1 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00165 * 2 1 4 4 C 1.50698 * 109.47291 * 270.00768 * 3 2 1 5 5 H 1.07997 * 119.99759 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00064 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99717 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00116 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46798 * 60.00064 * 8 6 4 10 10 H 1.48505 * 109.47154 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47518 * 300.00066 * 8 6 4 12 12 C 1.34776 * 120.00167 * 180.02562 * 2 1 3 13 13 O 1.21366 * 119.99950 * 174.33368 * 12 2 1 14 14 C 1.49294 * 119.99928 * 354.33706 * 12 2 1 15 15 O 1.21413 * 119.99651 * 354.23466 * 14 12 2 16 16 N 1.34770 * 119.99992 * 174.24140 * 14 12 2 17 17 C 1.40081 * 120.00039 * 184.09333 * 16 14 12 18 18 C 1.34409 * 122.18688 * 174.58405 * 17 16 14 19 19 S 1.76238 * 108.20650 * 179.79337 * 18 17 16 20 20 C 1.76151 * 89.92095 * 0.28397 * 19 18 17 21 21 C 1.47832 * 125.39321 * 179.97438 * 20 19 18 22 22 C 1.39560 * 120.14804 * 359.70290 * 21 20 19 23 23 C 1.37966 * 119.85647 * 180.02562 * 22 21 20 24 24 C 1.38353 * 120.14453 * 359.97438 * 23 22 21 25 25 C 1.38364 * 120.28696 * 0.28116 * 24 23 22 26 26 C 1.37953 * 120.14664 * 359.44235 * 25 24 23 27 27 N 1.30249 * 109.20779 * 359.71176 * 20 19 18 28 28 H 1.09005 * 109.46923 * 265.23498 * 1 2 3 29 29 H 1.08997 * 109.47262 * 25.22896 * 1 2 3 30 30 H 1.08996 * 109.47394 * 145.23298 * 1 2 3 31 31 H 1.09005 * 109.46952 * 30.00155 * 3 2 1 32 32 H 1.08997 * 109.46990 * 149.99730 * 3 2 1 33 33 H 0.97007 * 119.99592 * 180.02562 * 7 6 4 34 34 H 0.96997 * 120.00446 * 4.08230 * 16 14 12 35 35 H 1.07993 * 125.89843 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.07477 * 359.97438 * 22 21 20 37 37 H 1.07994 * 119.92692 * 180.02562 * 23 22 21 38 38 H 1.07992 * 119.86019 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.92319 * 179.70349 * 25 24 23 40 40 H 1.07997 * 120.07762 * 180.28344 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5525 3.6186 -0.6730 8 14 3.4377 3.4172 -3.4338 9 1 2.1403 3.5940 -4.1343 10 1 4.1791 4.7039 -3.4338 11 1 4.2410 2.3825 -4.1334 12 6 2.1389 -1.1672 -0.0005 13 8 3.3481 -1.1697 -0.1043 14 6 1.3979 -2.4570 0.1265 15 8 0.2019 -2.4519 0.3351 16 7 2.0567 -3.6269 0.0097 17 6 1.3492 -4.8355 0.0431 18 6 1.9452 -6.0203 -0.1753 19 16 0.7242 -7.2840 -0.0405 20 6 -0.4994 -6.0625 0.2965 21 6 -1.9303 -6.3317 0.5523 22 6 -2.4115 -7.6415 0.5326 23 6 -3.7482 -7.8858 0.7716 24 6 -4.6109 -6.8357 1.0309 25 6 -4.1412 -5.5344 1.0467 26 6 -2.8059 -5.2769 0.8149 27 7 0.0575 -4.8850 0.2901 28 1 -0.3633 -0.0854 1.0242 29 1 -0.3633 0.9296 -0.4380 30 1 -0.3634 -0.8442 -0.5860 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 4.0287 4.4450 -0.8503 34 1 3.0207 -3.6321 -0.0976 35 1 2.9922 -6.1720 -0.3920 36 1 -1.7392 -8.4621 0.3299 37 1 -4.1217 -8.8990 0.7570 38 1 -5.6563 -7.0322 1.2170 39 1 -4.8207 -4.7187 1.2450 40 1 -2.4396 -4.2611 0.8320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588626696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:57 Heat of formation + Delta-G solvation = 33.215239 kcal Electronic energy + Delta-G solvation = -26301.588845 eV Core-core repulsion = 22402.580546 eV Total energy + Delta-G solvation = -3899.008299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94521 -39.72884 -39.02623 -37.61825 -35.50848 -34.30091 -32.59482 -32.06917 -31.28357 -29.27057 -28.08930 -26.32443 -25.59632 -24.55478 -23.02467 -22.71828 -21.73717 -19.80349 -19.70997 -18.31963 -17.42098 -17.04665 -16.64442 -16.17064 -15.85295 -15.73458 -15.54211 -15.14438 -14.89662 -14.76970 -14.35401 -14.15525 -13.75008 -13.56030 -13.33313 -13.12299 -12.98418 -12.38727 -12.24731 -12.11590 -11.93680 -11.71719 -11.40585 -11.30800 -11.02998 -10.98994 -10.77240 -10.56862 -10.21807 -9.85926 -9.83776 -9.71021 -9.29046 -9.16096 -8.78212 -8.48804 -8.07776 -7.81365 -6.10247 -4.15543 -0.03822 1.02508 1.08229 1.20300 1.34961 1.85434 2.66200 2.79990 3.30322 3.34152 3.37322 3.54332 3.55626 3.78487 4.13196 4.40720 4.56389 4.61352 4.72490 4.82474 4.89732 5.00086 5.09812 5.20613 5.24448 5.34998 5.54300 5.74055 5.92127 6.06267 6.12756 6.15410 6.18692 6.26494 6.48236 6.59730 6.78344 6.89674 7.26240 7.32529 7.56120 7.83740 7.96955 8.12329 8.19842 8.61195 8.88644 9.49270 10.97965 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002403 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.266466 B =11650.344470 C =12624.391639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.562 5.562 3 C 0.243 3.757 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.496 3.504 13 O -0.523 6.523 14 C 0.502 3.498 15 O -0.462 6.462 16 N -0.633 5.633 17 C 0.320 3.680 18 C -0.303 4.303 19 S 0.103 5.897 20 C 0.134 3.866 21 C -0.029 4.029 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.104 4.104 25 C -0.122 4.122 26 C -0.064 4.064 27 N -0.442 5.442 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.265 0.735 34 H 0.431 0.569 35 H 0.184 0.816 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 -24.984 3.718 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.293 5.293 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.276 3.724 13 O -0.401 6.401 14 C 0.283 3.717 15 O -0.331 6.331 16 N -0.284 5.284 17 C 0.095 3.905 18 C -0.446 4.446 19 S 0.358 5.642 20 C -0.143 4.143 21 C -0.033 4.033 22 C -0.117 4.117 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.086 4.086 27 N -0.158 5.158 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.270 0.730 35 H 0.201 0.799 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.239 -25.256 3.850 28.775 hybrid contribution 1.333 1.165 -1.083 2.075 sum -11.906 -24.092 2.767 27.015 Atomic orbital electron populations 1.21996 0.79449 1.03106 1.01640 1.48116 1.07616 1.06710 1.66870 1.19516 0.92599 0.77295 0.98099 1.21331 1.37022 1.06547 0.91906 0.92309 1.24930 0.95181 0.96230 0.97656 1.69922 1.38124 1.14314 1.30868 0.86509 0.78437 0.77827 0.84378 1.20159 1.21101 1.20116 1.19517 0.87538 0.84318 0.81016 1.90744 1.13376 1.86548 1.49415 1.21033 0.87884 0.85286 0.77475 1.90775 1.14001 1.86569 1.41711 1.43148 1.11822 1.01985 1.71397 1.17171 0.87381 0.86276 0.99630 1.26145 1.05311 0.93536 1.19606 1.84671 1.00036 1.11862 1.67670 1.25710 0.97490 0.89213 1.01852 1.17825 0.87586 0.94174 1.03720 1.21135 0.96270 0.94842 0.99459 1.21008 0.92881 0.99517 1.00610 1.21358 0.99944 0.92801 0.98172 1.21215 0.95426 0.97128 1.00238 1.21483 0.92532 0.99729 0.94812 1.66234 1.08652 1.23805 1.17111 0.92944 0.91050 0.90403 0.94075 0.93531 0.92519 0.73014 0.79910 0.85747 0.85368 0.85625 0.85205 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 9.24 59.85 0.55 2.05 16 2 N -0.56 -12.49 2.86 -183.52 -0.52 -13.01 16 3 C 0.24 6.34 5.10 -5.19 -0.03 6.32 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.50 10.64 7.71 -11.66 -0.09 10.55 16 13 O -0.52 -12.44 16.12 5.48 0.09 -12.36 16 14 C 0.50 9.17 7.66 -11.66 -0.09 9.08 16 15 O -0.46 -8.72 11.84 5.44 0.06 -8.66 16 16 N -0.63 -9.64 5.42 -12.92 -0.07 -9.71 16 17 C 0.32 4.56 7.32 -156.31 -1.14 3.42 16 18 C -0.30 -3.31 11.27 29.38 0.33 -2.98 16 19 S 0.10 0.99 22.38 -107.50 -2.41 -1.42 16 20 C 0.13 1.65 7.34 -14.30 -0.11 1.55 16 21 C -0.03 -0.32 5.87 -104.98 -0.62 -0.93 16 22 C -0.10 -0.80 9.60 -39.19 -0.38 -1.17 16 23 C -0.12 -0.84 10.03 -39.64 -0.40 -1.23 16 24 C -0.10 -0.72 10.04 -39.49 -0.40 -1.12 16 25 C -0.12 -1.03 10.03 -39.64 -0.40 -1.42 16 26 C -0.06 -0.70 9.68 -39.19 -0.38 -1.08 16 27 N -0.44 -6.69 7.95 -10.37 -0.08 -6.77 16 28 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 30 H 0.08 1.40 5.93 -51.93 -0.31 1.09 16 31 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.43 5.71 8.24 -40.82 -0.34 5.37 16 35 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.12 0.81 7.30 -52.49 -0.38 0.43 16 37 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.14 1.79 7.82 -52.49 -0.41 1.38 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -33.63 365.83 -9.58 -43.20 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.32 Total: 2.53 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -3.55 Total: 9.43 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.06 Total: -54.95 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.15 Total: -21.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.41 Total: -1.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.63 -9.58 -43.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588626696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.418 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds