Wall clock time and date at job start Wed Apr 1 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00165 * 2 1 4 4 C 1.50698 * 109.47291 * 270.00768 * 3 2 1 5 5 H 1.07997 * 119.99759 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00064 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99717 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00116 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46798 * 60.00064 * 8 6 4 10 10 H 1.48505 * 109.47154 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47518 * 300.00066 * 8 6 4 12 12 C 1.34776 * 120.00167 * 180.02562 * 2 1 3 13 13 O 1.21366 * 119.99950 * 174.33368 * 12 2 1 14 14 C 1.49294 * 119.99928 * 354.33706 * 12 2 1 15 15 O 1.21413 * 119.99651 * 354.23466 * 14 12 2 16 16 N 1.34770 * 119.99992 * 174.24140 * 14 12 2 17 17 C 1.40081 * 120.00039 * 184.09333 * 16 14 12 18 18 C 1.34409 * 122.18688 * 174.58405 * 17 16 14 19 19 S 1.76238 * 108.20650 * 179.79337 * 18 17 16 20 20 C 1.76151 * 89.92095 * 0.28397 * 19 18 17 21 21 C 1.47832 * 125.39321 * 179.97438 * 20 19 18 22 22 C 1.39560 * 120.14804 * 359.70290 * 21 20 19 23 23 C 1.37966 * 119.85647 * 180.02562 * 22 21 20 24 24 C 1.38353 * 120.14453 * 359.97438 * 23 22 21 25 25 C 1.38364 * 120.28696 * 0.28116 * 24 23 22 26 26 C 1.37953 * 120.14664 * 359.44235 * 25 24 23 27 27 N 1.30249 * 109.20779 * 359.71176 * 20 19 18 28 28 H 1.09005 * 109.46923 * 265.23498 * 1 2 3 29 29 H 1.08997 * 109.47262 * 25.22896 * 1 2 3 30 30 H 1.08996 * 109.47394 * 145.23298 * 1 2 3 31 31 H 1.09005 * 109.46952 * 30.00155 * 3 2 1 32 32 H 1.08997 * 109.46990 * 149.99730 * 3 2 1 33 33 H 0.97007 * 119.99592 * 180.02562 * 7 6 4 34 34 H 0.96997 * 120.00446 * 4.08230 * 16 14 12 35 35 H 1.07993 * 125.89843 * 0.02562 * 18 17 16 36 36 H 1.08001 * 120.07477 * 359.97438 * 22 21 20 37 37 H 1.07994 * 119.92692 * 180.02562 * 23 22 21 38 38 H 1.07992 * 119.86019 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.92319 * 179.70349 * 25 24 23 40 40 H 1.07997 * 120.07762 * 180.28344 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5525 3.6186 -0.6730 8 14 3.4377 3.4172 -3.4338 9 1 2.1403 3.5940 -4.1343 10 1 4.1791 4.7039 -3.4338 11 1 4.2410 2.3825 -4.1334 12 6 2.1389 -1.1672 -0.0005 13 8 3.3481 -1.1697 -0.1043 14 6 1.3979 -2.4570 0.1265 15 8 0.2019 -2.4519 0.3351 16 7 2.0567 -3.6269 0.0097 17 6 1.3492 -4.8355 0.0431 18 6 1.9452 -6.0203 -0.1753 19 16 0.7242 -7.2840 -0.0405 20 6 -0.4994 -6.0625 0.2965 21 6 -1.9303 -6.3317 0.5523 22 6 -2.4115 -7.6415 0.5326 23 6 -3.7482 -7.8858 0.7716 24 6 -4.6109 -6.8357 1.0309 25 6 -4.1412 -5.5344 1.0467 26 6 -2.8059 -5.2769 0.8149 27 7 0.0575 -4.8850 0.2901 28 1 -0.3633 -0.0854 1.0242 29 1 -0.3633 0.9296 -0.4380 30 1 -0.3634 -0.8442 -0.5860 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 4.0287 4.4450 -0.8503 34 1 3.0207 -3.6321 -0.0976 35 1 2.9922 -6.1720 -0.3920 36 1 -1.7392 -8.4621 0.3299 37 1 -4.1217 -8.8990 0.7570 38 1 -5.6563 -7.0322 1.2170 39 1 -4.8207 -4.7187 1.2450 40 1 -2.4396 -4.2611 0.8320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588626696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:56 Heat of formation + Delta-G solvation = 12.254391 kcal Electronic energy + Delta-G solvation = -26302.497776 eV Core-core repulsion = 22402.580546 eV Total energy + Delta-G solvation = -3899.917229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21946 -40.89522 -39.91120 -39.05996 -37.15209 -35.67909 -34.67875 -32.85821 -31.90547 -30.26127 -30.03906 -27.87548 -26.76004 -26.04613 -24.35396 -23.63062 -22.70316 -21.31124 -20.64432 -19.27865 -18.93844 -18.75262 -17.97715 -17.48717 -17.21262 -16.95220 -16.71392 -16.43019 -16.11939 -15.92733 -15.78762 -15.01659 -14.97043 -14.82747 -14.37559 -14.24933 -14.06264 -13.91812 -13.75541 -13.60610 -13.36843 -13.01005 -12.92084 -12.63556 -12.41278 -12.30792 -12.23860 -12.01961 -11.99779 -11.77248 -10.85501 -10.69905 -10.66835 -10.29169 -10.00949 -9.90426 -9.67705 -8.93429 -8.26454 -6.41156 -0.85158 0.15093 0.19089 0.40114 0.46118 0.66898 1.34266 1.38306 1.40979 1.49290 1.73143 2.22726 2.33960 2.41896 2.89925 2.93074 3.04551 3.33960 3.88505 4.00896 4.09229 4.12796 4.31061 4.34709 4.39398 4.53747 4.61023 4.63781 4.82026 4.88961 4.93688 5.10016 5.12844 5.17906 5.38899 5.44082 5.51307 5.58462 5.65894 5.74437 5.96503 6.00116 6.22001 6.51762 6.64230 6.83801 6.94123 7.28909 8.81183 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002403 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.266466 B =11650.344470 C =12624.391639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.571 5.571 3 C 0.257 3.743 4 C -0.548 4.548 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.492 3.508 13 O -0.554 6.554 14 C 0.511 3.489 15 O -0.472 6.472 16 N -0.621 5.621 17 C 0.282 3.718 18 C -0.290 4.290 19 S 0.182 5.818 20 C 0.112 3.888 21 C -0.053 4.053 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.098 4.098 25 C -0.128 4.128 26 C -0.090 4.090 27 N -0.485 5.485 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.013 0.987 33 H 0.270 0.730 34 H 0.438 0.562 35 H 0.212 0.788 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.188 -28.111 2.758 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.302 5.302 3 C 0.137 3.863 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.273 3.727 13 O -0.433 6.433 14 C 0.291 3.709 15 O -0.343 6.343 16 N -0.273 5.273 17 C 0.058 3.942 18 C -0.433 4.433 19 S 0.438 5.562 20 C -0.163 4.163 21 C -0.057 4.057 22 C -0.117 4.117 23 C -0.135 4.135 24 C -0.117 4.117 25 C -0.147 4.147 26 C -0.111 4.111 27 N -0.202 5.202 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.278 0.722 35 H 0.229 0.771 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.160 0.840 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.541 -28.451 2.896 32.082 hybrid contribution 1.680 1.933 -0.730 2.664 sum -12.860 -26.517 2.165 29.551 Atomic orbital electron populations 1.22081 0.77192 1.03451 1.02764 1.48101 1.08969 1.05987 1.67170 1.19062 0.91419 0.78911 0.96905 1.21564 1.37557 1.06953 0.92524 0.92914 1.25820 0.94651 0.96148 1.02114 1.70030 1.38506 1.14726 1.33055 0.85450 0.78782 0.77509 0.78980 1.18813 1.20064 1.20088 1.20107 0.87383 0.85362 0.79820 1.90706 1.14788 1.87289 1.50556 1.20216 0.87449 0.84968 0.78272 1.90774 1.14052 1.86629 1.42797 1.42880 1.12097 1.01721 1.70554 1.17319 0.87779 0.86299 1.02779 1.26657 1.07133 0.93149 1.16334 1.84340 0.97258 1.09136 1.65500 1.26050 0.98784 0.89687 1.01817 1.18025 0.87108 0.95324 1.05255 1.21382 0.97416 0.93999 0.98945 1.21447 0.92124 1.01102 0.98802 1.21745 1.01524 0.91911 0.96526 1.21417 0.94531 0.98677 1.00026 1.21382 0.94007 0.98674 0.97070 1.66157 1.09384 1.25981 1.18726 0.91442 0.90756 0.89838 0.94664 0.96925 0.92146 0.72175 0.77079 0.83942 0.82036 0.82610 0.84047 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.30 9.24 127.77 1.18 4.48 16 2 N -0.57 -26.42 2.86 -852.90 -2.44 -28.86 16 3 C 0.26 14.01 5.10 85.63 0.44 14.45 16 4 C -0.55 -31.70 9.39 25.60 0.24 -31.46 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.71 5.46 84.65 0.46 1.17 16 7 N -0.92 -55.17 13.29 21.45 0.28 -54.89 16 8 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.49 21.97 7.71 87.22 0.67 22.64 16 13 O -0.55 -27.52 16.12 -3.30 -0.05 -27.57 16 14 C 0.51 19.31 7.66 87.22 0.67 19.98 16 15 O -0.47 -18.51 11.84 -3.44 -0.04 -18.56 16 16 N -0.62 -19.27 5.42 -313.14 -1.70 -20.96 16 17 C 0.28 7.98 7.32 131.83 0.96 8.95 16 18 C -0.29 -5.78 11.27 66.94 0.75 -5.03 16 19 S 0.18 3.01 22.38 -56.49 -1.26 1.75 16 20 C 0.11 2.72 7.34 87.47 0.64 3.36 16 21 C -0.05 -1.14 5.87 -20.10 -0.12 -1.25 16 22 C -0.10 -1.38 9.60 22.52 0.22 -1.16 16 23 C -0.12 -1.21 10.03 22.23 0.22 -0.99 16 24 C -0.10 -1.10 10.04 22.33 0.22 -0.87 16 25 C -0.13 -2.08 10.03 22.23 0.22 -1.86 16 26 C -0.09 -2.04 9.68 22.53 0.22 -1.82 16 27 N -0.49 -14.98 7.95 -186.74 -1.48 -16.47 16 28 H 0.07 2.33 8.11 -2.38 -0.02 2.31 16 29 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 30 H 0.08 3.09 5.93 -2.39 -0.01 3.07 16 31 H 0.04 1.93 8.07 -2.38 -0.02 1.91 16 32 H 0.01 0.77 7.51 -2.39 -0.02 0.75 16 33 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 34 H 0.44 11.77 8.24 -92.71 -0.76 11.01 16 35 H 0.21 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.14 1.39 7.30 -2.91 -0.02 1.36 16 37 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.11 3.15 7.82 -2.91 -0.02 3.12 16 Total: -1.00 -75.71 365.83 2.68 -73.03 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.34 Total: 15.17 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 7.01 Total: 30.59 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -5.33 Total: -121.18 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.09 Total: -46.12 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.26 Total: 1.75 kcal Total: -75.71 2.68 -73.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588626696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.288 kcal (2) G-P(sol) polarization free energy of solvation -75.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds