Wall clock time and date at job start Wed Apr 1 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00202 * 2 1 4 4 C 1.52997 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47162 * 64.99608 * 4 3 2 6 6 C 1.46495 * 120.00034 * 274.87151 * 5 4 3 7 7 C 1.50694 * 109.46867 * 269.99677 * 6 5 4 8 8 H 1.07997 * 120.00431 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00165 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47131 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47181 * 119.99742 * 11 9 7 14 14 H 1.48503 * 109.47082 * 239.99889 * 11 9 7 15 15 C 1.34780 * 119.99419 * 94.86942 * 5 4 3 16 16 O 1.21574 * 119.99583 * 185.58148 * 15 5 4 17 17 C 1.47698 * 120.00445 * 5.57596 * 15 5 4 18 18 C 1.39653 * 120.13240 * 55.02473 * 17 15 5 19 19 C 1.38333 * 119.84107 * 180.26903 * 18 17 15 20 20 O 1.35958 * 119.93933 * 179.72784 * 19 18 17 21 21 C 1.42898 * 116.99664 * 179.72833 * 20 19 18 22 22 C 1.38887 * 120.11681 * 359.46188 * 19 18 17 23 23 C 1.38240 * 120.27556 * 0.26631 * 22 19 18 24 24 Cl 1.73601 * 119.92613 * 179.97438 * 23 22 19 25 25 C 1.38434 * 120.15370 * 0.02562 * 23 22 19 26 26 F 1.35100 * 120.06139 * 180.02562 * 25 23 22 27 27 H 1.08997 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47037 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.46758 * 60.00444 * 1 2 3 30 30 H 1.09001 * 109.47183 * 59.99160 * 3 2 1 31 31 H 1.09001 * 109.46714 * 300.00142 * 3 2 1 32 32 H 1.08995 * 109.47039 * 305.00241 * 4 3 2 33 33 H 1.08993 * 109.47086 * 184.99633 * 4 3 2 34 34 H 1.08994 * 109.47333 * 30.00386 * 6 5 4 35 35 H 1.09009 * 109.47164 * 149.99852 * 6 5 4 36 36 H 0.97000 * 119.99934 * 180.02562 * 10 9 7 37 37 H 1.07997 * 120.07828 * 0.03085 * 18 17 15 38 38 H 1.08995 * 109.47498 * 300.00098 * 21 20 19 39 39 H 1.08997 * 109.47270 * 60.00809 * 21 20 19 40 40 H 1.09008 * 109.46895 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.86274 * 180.24586 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.0042 -0.8956 -1.3747 7 6 5.3511 -1.4115 -0.9380 8 1 6.1106 -0.7213 -0.6015 9 6 5.6139 -2.7647 -0.9681 10 7 4.6890 -3.6053 -1.3775 11 14 7.2833 -3.4042 -0.4261 12 1 8.1401 -2.2638 -0.0133 13 1 7.1094 -4.3333 0.7191 14 1 7.9276 -4.1239 -1.5540 15 6 4.3573 1.3356 -2.2882 16 8 4.6262 0.8256 -3.3586 17 6 4.4477 2.8007 -2.1247 18 6 5.2343 3.3454 -1.1075 19 6 5.3101 4.7183 -0.9563 20 8 6.0709 5.2506 0.0368 21 6 6.1088 6.6760 0.1318 22 6 4.6149 5.5541 -1.8207 23 6 3.8394 5.0202 -2.8329 24 17 2.9737 6.0732 -3.9078 25 6 3.7506 3.6478 -2.9907 26 9 2.9925 3.1280 -3.9809 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1764 0.0901 34 1 3.2275 -1.3285 -0.7444 35 1 3.8272 -1.1756 -2.4132 36 1 4.8738 -4.5573 -1.3983 37 1 5.7789 2.6962 -0.4380 38 1 6.5045 7.0915 -0.7949 39 1 5.1011 7.0559 0.2993 40 1 6.7504 6.9677 0.9634 41 1 4.6803 6.6255 -1.7015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591063773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:29 Heat of formation + Delta-G solvation = -127.638840 kcal Electronic energy + Delta-G solvation = -28782.052622 eV Core-core repulsion = 24410.963485 eV Total energy + Delta-G solvation = -4371.089137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.86535 -40.60599 -39.21699 -37.66259 -37.39612 -36.44399 -34.91626 -32.72885 -31.45817 -30.17389 -29.59196 -27.69086 -27.07400 -25.94455 -24.27594 -23.19536 -22.57018 -22.07930 -19.57269 -17.93530 -17.59258 -17.33737 -16.71688 -16.41156 -16.24117 -16.09855 -15.67029 -15.47841 -15.27321 -15.10513 -14.73806 -14.45723 -14.25182 -13.96934 -13.45194 -13.18170 -13.13282 -13.05754 -12.52855 -12.30914 -12.22619 -11.99004 -11.86163 -11.64342 -11.43661 -11.32166 -11.25211 -10.91758 -10.84617 -10.83140 -10.40038 -10.13177 -9.58584 -9.43860 -9.30821 -9.06534 -8.40043 -8.35555 -7.69558 -5.97351 -4.01953 0.52537 0.79216 1.65731 2.77021 2.93787 3.33991 3.40747 3.42079 3.44567 3.71036 3.97101 4.08230 4.40576 4.47560 4.52083 4.68926 4.76830 4.79796 4.98016 5.10213 5.26442 5.31968 5.37219 5.42122 5.47998 5.51119 5.58605 5.62361 5.67012 5.72318 5.83668 5.90492 6.15402 6.21417 6.91281 7.18006 7.41955 7.51443 7.62198 7.99650 8.29736 8.34325 8.81576 9.04049 9.61791 11.10760 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.003819 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.270446 B = 7330.194698 C = 8082.619844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.046 3.954 4 C 0.100 3.900 5 N -0.574 5.574 6 C 0.247 3.753 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.094 4.094 18 C -0.092 4.092 19 C 0.128 3.872 20 O -0.305 6.305 21 C 0.023 3.977 22 C -0.166 4.166 23 C -0.039 4.039 24 Cl -0.044 7.044 25 C 0.113 3.887 26 F -0.112 7.112 27 H 0.085 0.915 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.158 0.842 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 22.644 4.889 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.032 4.032 4 C -0.024 4.024 5 N -0.305 5.305 6 C 0.128 3.872 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.332 3.668 16 O -0.393 6.393 17 C -0.098 4.098 18 C -0.112 4.112 19 C 0.082 3.918 20 O -0.218 6.218 21 C -0.072 4.072 22 C -0.186 4.186 23 C -0.067 4.067 24 Cl -0.015 7.015 25 C 0.092 3.908 26 F -0.091 7.091 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.176 0.824 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.027 21.933 4.306 22.712 hybrid contribution 0.369 0.209 -0.052 0.427 sum -3.659 22.142 4.254 22.842 Atomic orbital electron populations 1.22704 0.82021 1.02650 0.99108 1.88113 1.18772 1.26700 1.95134 1.23045 0.95013 0.85588 0.99578 1.21811 0.91742 0.99510 0.89359 1.48143 1.61670 1.09655 1.11009 1.19465 0.97540 0.70861 0.99288 1.21478 0.98977 0.92149 1.44130 0.92458 1.24907 0.97032 0.96709 0.95306 1.69958 1.33255 1.02798 1.46975 0.86477 0.84086 0.78833 0.78206 1.19812 1.21003 1.20965 1.17725 0.79620 0.84232 0.85204 1.90823 1.49072 1.73546 1.25832 1.20208 0.98384 0.95879 0.95361 1.20573 0.99946 0.92438 0.98196 1.18602 0.92233 0.92038 0.88920 1.86169 1.64292 1.23315 1.48016 1.23159 1.02621 0.78190 1.03228 1.21014 1.00419 1.00976 0.96172 1.20503 1.00619 0.89150 0.96451 1.98390 1.74957 1.64859 1.63335 1.17168 0.95502 0.89011 0.89125 1.91592 1.72625 1.86857 1.57989 0.89679 0.94702 0.94582 0.92945 0.93863 0.88596 0.89423 0.92789 0.93960 0.92842 0.82420 0.92336 0.92314 0.87746 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.55 9.09 -35.23 -0.32 -6.87 16 3 C 0.05 0.69 6.28 37.16 0.23 0.92 16 4 C 0.10 1.65 5.68 -4.04 -0.02 1.63 16 5 N -0.57 -12.41 2.44 -176.24 -0.43 -12.84 16 6 C 0.25 6.58 5.02 -5.20 -0.03 6.55 16 7 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 11 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.55 11.94 6.85 -12.39 -0.08 11.85 16 16 O -0.52 -13.61 16.44 5.30 0.09 -13.52 16 17 C -0.09 -1.57 4.91 -104.93 -0.51 -2.08 16 18 C -0.09 -1.26 7.41 -39.02 -0.29 -1.55 16 19 C 0.13 1.43 6.68 -39.31 -0.26 1.17 16 20 O -0.30 -3.00 10.49 -19.61 -0.21 -3.20 16 21 C 0.02 0.13 9.81 101.05 0.99 1.12 16 22 C -0.17 -1.69 8.81 -39.34 -0.35 -2.04 16 23 C -0.04 -0.49 6.32 -39.51 -0.25 -0.74 16 24 Cl -0.04 -0.50 28.61 -51.86 -1.48 -1.98 16 25 C 0.11 1.79 7.24 -38.94 -0.28 1.51 16 26 F -0.11 -2.02 16.23 2.25 0.04 -1.99 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.63 8.11 -51.93 -0.42 1.21 16 33 H 0.09 1.18 4.42 -51.93 -0.23 0.95 16 34 H 0.05 1.49 6.68 -51.93 -0.35 1.14 16 35 H 0.04 1.29 7.35 -51.92 -0.38 0.90 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.16 2.12 7.58 -52.49 -0.40 1.72 16 38 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 39 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 40 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.15 1.05 6.27 -52.48 -0.33 0.72 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -34.96 369.00 -6.18 -41.14 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.98 Total: -3.42 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.16 Total: 6.26 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.31 Total: -38.90 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.44 Total: -23.60 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.96 -6.18 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591063773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.497 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds