Wall clock time and date at job start Wed Apr 1 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00202 * 2 1 4 4 C 1.52997 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47162 * 64.99608 * 4 3 2 6 6 C 1.46495 * 120.00034 * 274.87151 * 5 4 3 7 7 C 1.50694 * 109.46867 * 269.99677 * 6 5 4 8 8 H 1.07997 * 120.00431 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00165 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47131 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47181 * 119.99742 * 11 9 7 14 14 H 1.48503 * 109.47082 * 239.99889 * 11 9 7 15 15 C 1.34780 * 119.99419 * 94.86942 * 5 4 3 16 16 O 1.21574 * 119.99583 * 185.58148 * 15 5 4 17 17 C 1.47698 * 120.00445 * 5.57596 * 15 5 4 18 18 C 1.39653 * 120.13240 * 55.02473 * 17 15 5 19 19 C 1.38333 * 119.84107 * 180.26903 * 18 17 15 20 20 O 1.35958 * 119.93933 * 179.72784 * 19 18 17 21 21 C 1.42898 * 116.99664 * 179.72833 * 20 19 18 22 22 C 1.38887 * 120.11681 * 359.46188 * 19 18 17 23 23 C 1.38240 * 120.27556 * 0.26631 * 22 19 18 24 24 Cl 1.73601 * 119.92613 * 179.97438 * 23 22 19 25 25 C 1.38434 * 120.15370 * 0.02562 * 23 22 19 26 26 F 1.35100 * 120.06139 * 180.02562 * 25 23 22 27 27 H 1.08997 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47037 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.46758 * 60.00444 * 1 2 3 30 30 H 1.09001 * 109.47183 * 59.99160 * 3 2 1 31 31 H 1.09001 * 109.46714 * 300.00142 * 3 2 1 32 32 H 1.08995 * 109.47039 * 305.00241 * 4 3 2 33 33 H 1.08993 * 109.47086 * 184.99633 * 4 3 2 34 34 H 1.08994 * 109.47333 * 30.00386 * 6 5 4 35 35 H 1.09009 * 109.47164 * 149.99852 * 6 5 4 36 36 H 0.97000 * 119.99934 * 180.02562 * 10 9 7 37 37 H 1.07997 * 120.07828 * 0.03085 * 18 17 15 38 38 H 1.08995 * 109.47498 * 300.00098 * 21 20 19 39 39 H 1.08997 * 109.47270 * 60.00809 * 21 20 19 40 40 H 1.09008 * 109.46895 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.86274 * 180.24586 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.0042 -0.8956 -1.3747 7 6 5.3511 -1.4115 -0.9380 8 1 6.1106 -0.7213 -0.6015 9 6 5.6139 -2.7647 -0.9681 10 7 4.6890 -3.6053 -1.3775 11 14 7.2833 -3.4042 -0.4261 12 1 8.1401 -2.2638 -0.0133 13 1 7.1094 -4.3333 0.7191 14 1 7.9276 -4.1239 -1.5540 15 6 4.3573 1.3356 -2.2882 16 8 4.6262 0.8256 -3.3586 17 6 4.4477 2.8007 -2.1247 18 6 5.2343 3.3454 -1.1075 19 6 5.3101 4.7183 -0.9563 20 8 6.0709 5.2506 0.0368 21 6 6.1088 6.6760 0.1318 22 6 4.6149 5.5541 -1.8207 23 6 3.8394 5.0202 -2.8329 24 17 2.9737 6.0732 -3.9078 25 6 3.7506 3.6478 -2.9907 26 9 2.9925 3.1280 -3.9809 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9785 2.1764 0.0901 34 1 3.2275 -1.3285 -0.7444 35 1 3.8272 -1.1756 -2.4132 36 1 4.8738 -4.5573 -1.3983 37 1 5.7789 2.6962 -0.4380 38 1 6.5045 7.0915 -0.7949 39 1 5.1011 7.0559 0.2993 40 1 6.7504 6.9677 0.9634 41 1 4.6803 6.6255 -1.7015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591063773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:28 Heat of formation + Delta-G solvation = -151.572779 kcal Electronic energy + Delta-G solvation = -28783.090475 eV Core-core repulsion = 24410.963485 eV Total energy + Delta-G solvation = -4372.126991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.12562 -41.69862 -40.59240 -38.84132 -38.50340 -37.46605 -36.65325 -34.81109 -32.65923 -31.16731 -31.08953 -29.11052 -28.12938 -27.14808 -25.78713 -24.62693 -23.84198 -23.45142 -20.90287 -19.16115 -18.73071 -18.63035 -18.34800 -18.01995 -17.55297 -17.14298 -16.91818 -16.61727 -16.54415 -16.38493 -16.14758 -15.89150 -15.61244 -15.27884 -14.68828 -14.53188 -14.30864 -14.13050 -14.05065 -13.69383 -13.45487 -13.23338 -13.09437 -12.96529 -12.81241 -12.73124 -12.57790 -12.31384 -12.18821 -12.18175 -12.01281 -11.73936 -11.66001 -10.98763 -10.63790 -10.56481 -10.24884 -9.52676 -9.38208 -8.18364 -6.33231 -0.54093 -0.25950 0.68116 1.38485 1.41248 1.50295 1.54448 2.02229 2.04165 2.30470 2.44645 2.84495 2.91993 3.11912 3.23075 3.59747 3.62329 3.90391 4.07962 4.17834 4.21415 4.32721 4.36868 4.43976 4.48955 4.51154 4.54523 4.57120 4.74754 4.75207 4.84136 4.86565 4.87410 5.07597 5.19545 5.29554 5.53394 5.82837 6.08408 6.16958 6.28156 6.59578 6.75537 7.14164 7.37726 8.89788 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.003819 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.270446 B = 7330.194698 C = 8082.619844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.047 3.953 4 C 0.096 3.904 5 N -0.578 5.578 6 C 0.268 3.732 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.970 3.030 12 H -0.262 1.262 13 H -0.270 1.270 14 H -0.284 1.284 15 C 0.543 3.457 16 O -0.581 6.581 17 C -0.109 4.109 18 C -0.097 4.097 19 C 0.150 3.850 20 O -0.313 6.313 21 C 0.007 3.993 22 C -0.140 4.140 23 C -0.032 4.032 24 Cl -0.030 7.030 25 C 0.087 3.913 26 F -0.136 7.136 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.039 0.961 35 H -0.011 1.011 36 H 0.266 0.734 37 H 0.157 0.843 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 26.397 7.279 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.030 4.030 4 C -0.027 4.027 5 N -0.307 5.307 6 C 0.147 3.853 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.794 3.206 12 H -0.186 1.186 13 H -0.195 1.195 14 H -0.210 1.210 15 C 0.330 3.670 16 O -0.461 6.461 17 C -0.113 4.113 18 C -0.116 4.116 19 C 0.103 3.897 20 O -0.226 6.226 21 C -0.087 4.087 22 C -0.159 4.159 23 C -0.060 4.060 24 Cl 0.000 7.000 25 C 0.066 3.934 26 F -0.114 7.114 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.175 0.825 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.142 0.858 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.013 25.743 6.750 26.783 hybrid contribution 0.023 -0.782 -0.748 1.082 sum -2.990 24.961 6.002 25.846 Atomic orbital electron populations 1.22864 0.80041 1.03194 1.00732 1.88051 1.21180 1.28521 1.95482 1.23108 0.93522 0.85000 1.01378 1.22150 0.93396 1.00598 0.86518 1.48071 1.61610 1.07925 1.13097 1.18821 0.96680 0.74325 0.95450 1.21761 0.99546 0.92701 1.44219 0.92281 1.25886 1.01255 0.96923 0.95114 1.70097 1.35596 1.03247 1.47859 0.85338 0.78858 0.78459 0.77960 1.18615 1.19478 1.20956 1.18450 0.77933 0.86561 0.84016 1.90765 1.51740 1.75468 1.28169 1.19605 1.01394 0.92344 0.97973 1.20476 0.99604 0.94037 0.97475 1.18434 0.91398 0.90975 0.88888 1.86193 1.63355 1.26145 1.46893 1.23605 1.04577 0.75534 1.04938 1.21410 0.97746 1.02837 0.93890 1.20528 1.00596 0.87877 0.96982 1.98400 1.74712 1.63840 1.63083 1.17409 0.96476 0.90418 0.89116 1.91526 1.73397 1.87442 1.59039 0.89852 0.91611 0.94258 0.88560 0.94280 0.89222 0.86007 0.94280 0.99291 0.92521 0.82500 0.90896 0.90295 0.85779 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.03 9.09 -148.98 -1.35 -16.38 16 3 C 0.05 1.40 6.28 71.98 0.45 1.85 16 4 C 0.10 3.18 5.68 86.38 0.49 3.67 16 5 N -0.58 -26.41 2.44 -829.76 -2.03 -28.44 16 6 C 0.27 15.34 5.02 85.63 0.43 15.77 16 7 C -0.54 -32.20 9.39 25.60 0.24 -31.96 16 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.01 0.42 5.46 84.66 0.46 0.88 16 10 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 11 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 12 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 15 C 0.54 25.17 6.85 86.74 0.59 25.76 16 16 O -0.58 -33.22 16.44 -3.95 -0.06 -33.28 16 17 C -0.11 -3.70 4.91 -20.07 -0.10 -3.80 16 18 C -0.10 -2.52 7.41 22.63 0.17 -2.35 16 19 C 0.15 2.83 6.68 22.45 0.15 2.98 16 20 O -0.31 -4.77 10.49 -93.07 -0.98 -5.75 16 21 C 0.01 0.04 9.81 113.37 1.11 1.15 16 22 C -0.14 -2.25 8.81 22.43 0.20 -2.05 16 23 C -0.03 -0.72 6.32 22.32 0.14 -0.58 16 24 Cl -0.03 -0.59 28.61 -2.72 -0.08 -0.67 16 25 C 0.09 2.76 7.24 22.69 0.16 2.92 16 26 F -0.14 -5.12 16.23 44.97 0.73 -4.39 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 33 H 0.12 3.16 4.42 -2.39 -0.01 3.15 16 34 H 0.04 2.32 6.68 -2.39 -0.02 2.31 16 35 H -0.01 -0.74 7.35 -2.38 -0.02 -0.76 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.16 4.05 7.58 -2.91 -0.02 4.03 16 38 H 0.07 0.26 7.66 -2.39 -0.02 0.24 16 39 H 0.08 0.19 7.65 -2.39 -0.02 0.17 16 40 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 41 H 0.19 1.49 6.27 -2.91 -0.02 1.47 16 Total: -1.00 -83.46 369.00 5.36 -78.10 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.07 Total: 4.63 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.75 Total: 16.23 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -1.74 Total: -86.26 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -2.40 Total: -55.41 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.73 Total: -4.39 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -83.46 5.36 -78.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591063773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.473 kcal (2) G-P(sol) polarization free energy of solvation -83.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds