Wall clock time and date at job start Wed Apr 1 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00124 * 2 1 4 4 C 1.50708 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.33388 * 122.53999 * 269.97969 * 4 3 2 6 6 S 1.75876 * 109.59086 * 179.77578 * 5 4 3 7 7 C 1.75887 * 90.97287 * 0.31528 * 6 5 4 8 8 C 1.50697 * 125.20089 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47252 * 269.69264 * 8 7 6 10 10 S 1.65598 * 120.00011 * 165.00416 * 9 8 7 11 11 O 1.42104 * 104.27721 * 308.92614 * 10 9 8 12 12 O 1.42102 * 104.27547 * 181.07217 * 10 9 8 13 13 C 1.81402 * 104.44974 * 65.00162 * 10 9 8 14 14 C 1.53001 * 109.46891 * 186.02560 * 13 10 9 15 15 C 1.50699 * 115.55174 * 299.72056 * 14 13 10 16 16 H 1.07999 * 119.99758 * 95.16501 * 15 14 13 17 17 C 1.37875 * 120.00017 * 275.16466 * 15 14 13 18 18 N 1.31516 * 119.99681 * 7.14031 * 17 15 14 19 19 Si 1.86798 * 120.00198 * 187.13542 * 17 15 14 20 20 H 1.48496 * 109.47369 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47205 * 300.00437 * 19 17 15 22 22 H 1.48507 * 109.46959 * 60.00253 * 19 17 15 23 23 C 1.53008 * 117.49594 * 85.39127 * 14 13 10 24 24 C 1.53003 * 117.49760 * 154.04894 * 14 13 10 25 25 C 1.33386 * 109.59105 * 359.68373 * 7 6 5 26 26 H 1.09002 * 109.47411 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47164 * 299.99711 * 1 2 3 28 28 H 1.09001 * 109.47206 * 59.99417 * 1 2 3 29 29 H 1.09008 * 109.47221 * 60.00512 * 3 2 1 30 30 H 1.09001 * 109.47507 * 300.00265 * 3 2 1 31 31 H 1.08003 * 125.20203 * 0.06028 * 5 4 3 32 32 H 1.09005 * 109.46725 * 149.69800 * 8 7 6 33 33 H 1.08996 * 109.47376 * 29.69636 * 8 7 6 34 34 H 0.97001 * 120.00090 * 345.00219 * 9 8 7 35 35 H 1.08999 * 109.47001 * 66.02450 * 13 10 9 36 36 H 1.08995 * 109.46816 * 306.02411 * 13 10 9 37 37 H 0.97000 * 120.00212 * 355.43693 * 18 17 15 38 38 H 1.08998 * 117.49599 * 214.99858 * 23 14 13 39 39 H 1.08992 * 117.49997 * 0.02562 * 23 14 13 40 40 H 1.09005 * 117.49778 * 359.97438 * 24 14 13 41 41 H 1.08996 * 117.49811 * 144.97546 * 24 14 13 42 42 H 1.07996 * 122.54067 * 180.26061 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2283 1.1300 1.1235 6 16 5.9363 0.9882 0.7287 7 6 5.5723 1.0239 -0.9917 8 6 6.5929 0.9424 -2.0974 9 7 7.0329 2.2928 -2.4565 10 16 8.4011 2.5036 -3.3653 11 8 9.3905 1.7374 -2.6921 12 8 8.5255 3.9138 -3.4894 13 6 7.9990 1.7565 -4.9687 14 6 9.2448 1.7541 -5.8569 15 6 9.8288 3.1096 -6.1611 16 1 10.6379 3.4964 -5.5594 17 6 9.3301 3.8560 -7.2076 18 7 8.2568 3.4514 -7.8511 19 14 10.1788 5.4420 -7.7115 20 1 9.4514 6.0514 -8.8537 21 1 10.1820 6.3872 -6.5661 22 1 11.5776 5.1483 -8.1148 23 6 10.2181 0.5833 -5.7055 24 6 9.3315 0.6862 -6.9492 25 6 4.2542 1.1279 -1.1679 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8208 1.1615 2.1233 32 1 6.1473 0.4619 -2.9685 33 1 7.4493 0.3591 -1.7592 34 1 6.5229 3.0635 -2.1618 35 1 7.2100 2.3337 -5.4508 36 1 7.6589 0.7321 -4.8170 37 1 7.8547 2.5959 -7.6337 38 1 11.2808 0.7935 -5.8259 39 1 9.9707 -0.1854 -4.9734 40 1 8.5013 -0.0150 -7.0346 41 1 9.8107 0.9642 -7.8879 42 1 3.8001 1.1634 -2.1471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594850061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:22 Heat of formation + Delta-G solvation = -88.528938 kcal Electronic energy + Delta-G solvation = -25477.111164 eV Core-core repulsion = 21675.974842 eV Total energy + Delta-G solvation = -3801.136322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.89026 -38.88604 -38.24654 -37.98834 -36.88828 -36.24655 -34.04695 -31.59337 -29.98384 -28.68062 -27.06663 -26.89867 -26.49618 -23.14660 -22.71600 -21.81355 -20.40985 -20.03448 -18.92331 -18.78998 -18.18816 -17.37261 -17.33665 -17.04880 -16.61364 -16.24244 -15.89778 -15.75075 -15.63348 -15.45370 -14.97664 -14.56194 -14.36091 -14.14985 -13.81765 -13.68690 -13.54632 -13.10707 -13.05153 -13.01272 -12.98224 -12.79076 -12.67844 -12.61034 -12.34745 -12.24333 -12.10261 -11.94305 -11.69569 -11.50635 -10.65343 -10.62971 -10.58528 -10.53006 -10.11501 -9.76826 -9.45276 -8.61927 -6.39917 -0.66420 -0.06483 0.59576 0.97931 1.47916 1.52095 1.58900 1.77972 2.04536 2.53906 2.87697 3.11288 3.12908 3.17018 3.36103 3.53861 3.82836 3.98741 4.06494 4.12898 4.23866 4.33819 4.35623 4.38891 4.43140 4.48490 4.57476 4.58586 4.61699 4.68399 4.74446 4.83621 4.89289 5.02499 5.06966 5.25535 5.33115 5.43138 5.43249 5.99577 6.01935 6.16149 6.21903 6.65131 7.42619 8.80372 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.002644 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.856289 B =10585.980253 C =10980.649189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.122 3.878 4 C -0.124 4.124 5 C -0.182 4.182 6 S 0.111 5.889 7 C -0.206 4.206 8 C 0.180 3.820 9 N -1.115 6.115 10 S 2.631 3.369 11 O -0.991 6.991 12 O -0.991 6.991 13 C -0.562 4.562 14 C -0.015 4.015 15 C -0.606 4.606 16 H 0.039 0.961 17 C -0.002 4.002 18 N -0.917 5.917 19 Si 1.091 2.909 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.180 4.180 24 C -0.157 4.157 25 C -0.102 4.102 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.188 0.812 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.422 0.578 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.272 0.728 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 -7.938 16.607 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.043 3.957 4 C -0.137 4.137 5 C -0.318 4.318 6 S 0.377 5.623 7 C -0.324 4.324 8 C 0.053 3.947 9 N -0.876 5.876 10 S 2.727 3.273 11 O -0.981 6.981 12 O -0.981 6.981 13 C -0.695 4.695 14 C -0.017 4.017 15 C -0.644 4.644 16 H 0.057 0.943 17 C -0.205 4.205 18 N -0.551 5.551 19 Si 0.914 3.086 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.217 4.217 24 C -0.196 4.196 25 C -0.133 4.133 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.205 0.795 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.257 0.743 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.541 -6.669 16.707 22.516 hybrid contribution -1.835 -0.843 -0.186 2.028 sum -15.376 -7.512 16.521 23.787 Atomic orbital electron populations 1.22928 0.79369 1.03759 1.01048 1.87927 1.21388 1.28249 1.95635 1.21098 0.87434 0.84882 1.02267 1.18801 0.96508 1.06127 0.92221 1.25911 0.95608 1.06822 1.03456 1.84566 1.06654 1.71328 0.99742 1.24285 0.97723 1.13047 0.97368 1.19882 0.96099 0.83002 0.95703 1.55676 1.47728 1.14129 1.70051 1.04140 0.73256 0.73698 0.76171 1.93464 1.58329 1.73698 1.72641 1.93502 1.85359 1.31898 1.87373 1.29967 1.07436 1.12951 1.19128 1.18651 0.92751 0.91095 0.99178 1.21598 1.21702 1.02551 1.18524 0.94261 1.26818 0.94926 1.05455 0.93258 1.70842 1.18215 1.22236 1.43852 0.83278 0.75817 0.72901 0.76592 1.20002 1.20700 1.19338 1.23124 0.96971 1.00871 1.00715 1.22765 1.02060 1.01886 0.92860 1.20243 0.91944 1.00665 1.00485 0.88843 0.92777 0.93160 0.90724 0.91273 0.79489 0.87453 0.89463 0.74294 0.86161 0.83860 0.91683 0.90090 0.87679 0.88277 0.91454 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.13 10.69 -148.98 -1.59 -8.72 16 3 C 0.12 1.74 6.19 71.24 0.44 2.18 16 4 C -0.12 -2.21 5.43 -20.92 -0.11 -2.33 16 5 C -0.18 -3.04 10.98 66.72 0.73 -2.31 16 6 S 0.11 2.24 23.33 -56.49 -1.32 0.92 16 7 C -0.21 -4.39 5.91 24.59 0.15 -4.25 16 8 C 0.18 4.15 6.62 85.63 0.57 4.71 16 9 N -1.12 -31.71 5.88 -190.79 -1.12 -32.83 16 10 S 2.63 104.19 5.10 -56.49 -0.29 103.90 16 11 O -0.99 -42.68 17.50 -127.65 -2.23 -44.92 16 12 O -0.99 -48.56 17.57 -127.65 -2.24 -50.81 16 13 C -0.56 -21.91 5.87 71.98 0.42 -21.49 16 14 C -0.01 -0.68 0.95 -52.92 -0.05 -0.74 16 15 C -0.61 -33.89 7.88 25.60 0.20 -33.69 16 16 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 17 C 0.00 -0.10 5.39 84.65 0.46 0.36 16 18 N -0.92 -52.62 13.57 21.45 0.29 -52.33 16 19 Si 1.09 51.29 29.91 68.60 2.05 53.34 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C -0.18 -7.44 9.95 30.62 0.30 -7.14 16 24 C -0.16 -6.68 8.74 30.62 0.27 -6.41 16 25 C -0.10 -1.96 9.85 21.22 0.21 -1.75 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.80 8.12 -2.38 -0.02 0.78 16 30 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 31 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.09 2.06 7.69 -2.39 -0.02 2.05 16 34 H 0.42 10.95 8.61 -96.75 -0.83 10.12 16 35 H 0.12 4.89 7.79 -2.39 -0.02 4.87 16 36 H 0.14 4.19 8.11 -2.39 -0.02 4.17 16 37 H 0.27 15.11 6.17 -92.71 -0.57 14.54 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -75.20 383.31 -1.23 -76.43 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.40 Total: 26.35 kcal Atomic # 6 Polarization: -76.16 SS G_CDS: 4.83 Total: -71.33 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -0.83 Total: -85.16 kcal Atomic # 8 Polarization: -98.37 SS G_CDS: -6.07 Total: -104.44 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Atomic # 16 Polarization: 106.42 SS G_CDS: -1.61 Total: 104.82 kcal Total: -75.20 -1.23 -76.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594850061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.099 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds