Wall clock time and date at job start Wed Apr 1 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65599 * 119.99989 * 2 1 4 4 O 1.42107 * 106.40481 * 311.46187 * 3 2 1 5 5 O 1.42103 * 106.40338 * 178.53953 * 3 2 1 6 6 C 1.76203 * 107.22020 * 65.00003 * 3 2 1 7 7 C 1.38235 * 120.00231 * 89.99610 * 6 3 2 8 8 C 1.38234 * 120.00220 * 179.97438 * 7 6 3 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.50693 * 120.00207 * 179.72405 * 9 8 7 11 11 S 1.81401 * 109.47312 * 89.99480 * 10 9 8 12 12 O 1.42103 * 109.46977 * 63.61397 * 11 10 9 13 13 C 1.81395 * 103.00006 * 180.02562 * 11 10 9 14 14 C 1.53007 * 109.47298 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47520 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47472 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99830 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00396 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46889 * 90.00024 * 20 18 16 22 22 H 1.48500 * 109.47012 * 209.99856 * 20 18 16 23 23 H 1.48496 * 109.47230 * 329.99928 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 9 8 7 25 25 C 1.38234 * 120.00095 * 0.43554 * 24 9 8 26 26 H 1.08995 * 109.46835 * 300.00287 * 1 2 3 27 27 H 1.09000 * 109.46726 * 60.00031 * 1 2 3 28 28 H 1.08993 * 109.47002 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00332 * 179.97438 * 2 1 3 30 30 H 1.07999 * 119.99770 * 0.02562 * 7 6 3 31 31 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.47097 * 209.99342 * 10 9 8 33 33 H 1.09001 * 109.47081 * 329.99847 * 10 9 8 34 34 H 1.09000 * 109.47424 * 299.99435 * 13 11 10 35 35 H 1.09004 * 109.47564 * 60.00160 * 13 11 10 36 36 H 1.09005 * 109.46803 * 300.00244 * 14 13 11 37 37 H 1.08996 * 109.46994 * 59.99585 * 14 13 11 38 38 H 1.08998 * 109.46848 * 300.00090 * 15 14 13 39 39 H 1.08998 * 109.46897 * 59.99837 * 15 14 13 40 40 H 0.96995 * 120.00083 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.00354 * 180.21032 * 24 9 8 42 42 H 1.08001 * 120.00324 * 179.78922 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6739 1.1003 0.0347 6 6 1.9379 2.2415 1.5254 7 6 2.7381 2.0157 2.6297 8 6 2.4598 2.6495 3.8262 9 6 1.3777 3.5046 3.9201 10 6 1.0706 4.1908 5.2261 11 16 1.9451 5.7785 5.2953 12 8 1.4601 6.6316 4.2676 13 6 1.4591 6.4419 6.9121 14 6 2.1249 7.8028 7.1262 15 6 1.7156 8.3621 8.4901 16 6 2.3708 9.7027 8.7006 17 1 3.0146 10.1148 7.9376 18 6 2.1486 10.4031 9.8672 19 7 1.3643 9.9015 10.7961 20 14 2.9615 12.0646 10.1284 21 1 2.0749 13.1366 9.6084 22 1 3.1974 12.2776 11.5790 23 1 4.2581 12.1004 9.4055 24 6 0.5798 3.7335 2.8147 25 6 0.8586 3.1004 1.6179 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9501 -0.8400 0.0004 30 1 3.5812 1.3447 2.5574 31 1 3.0853 2.4734 4.6888 32 1 -0.0029 4.3637 5.3020 33 1 1.3965 3.5601 6.0533 34 1 0.3759 6.5586 6.9464 35 1 1.7756 5.7548 7.6969 36 1 3.2082 7.6866 7.0918 37 1 1.8081 8.4897 6.3414 38 1 0.6323 8.4781 8.5249 39 1 2.0328 7.6750 9.2746 40 1 1.2082 10.3941 11.6170 41 1 -0.2637 4.4042 2.8870 42 1 0.2332 3.2765 0.7552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596042399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:47 Heat of formation + Delta-G solvation = -100.280100 kcal Electronic energy + Delta-G solvation = -24385.150683 eV Core-core repulsion = 20583.504793 eV Total energy + Delta-G solvation = -3801.645891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.70079 -37.60222 -36.21093 -35.61315 -35.47699 -34.49986 -33.42281 -32.07722 -31.42815 -28.02246 -27.39908 -26.49910 -23.58789 -23.25767 -22.34446 -20.34386 -19.98210 -18.48031 -17.93708 -17.48307 -16.75411 -16.39748 -16.02550 -15.89612 -15.41099 -15.09389 -14.84156 -14.76291 -14.48114 -14.30422 -14.02025 -13.94368 -13.47178 -13.32616 -13.16378 -12.56405 -12.46670 -12.43824 -12.37493 -12.20790 -12.08059 -12.00566 -11.56013 -11.47350 -11.23356 -10.91496 -10.86744 -10.74971 -10.40958 -10.13796 -9.86158 -9.71525 -9.40509 -9.24103 -9.00100 -8.39797 -8.10787 -6.04744 -4.07528 -0.02530 0.35484 0.94745 1.56640 2.59305 2.66826 3.14898 3.30028 3.36170 3.39814 3.41961 3.78952 3.95797 4.28265 4.37194 4.42859 4.50159 4.53221 4.81507 4.92147 4.94717 5.11100 5.22130 5.23789 5.26064 5.30870 5.37300 5.45514 5.50504 5.58377 5.70093 5.79132 6.07723 6.10435 6.40498 6.43224 6.45889 6.62084 6.97582 7.60249 7.72020 7.94176 8.35857 8.99298 9.57020 11.06451 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.001722 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.506781 B =16253.157939 C =16428.267982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.121 6.121 3 S 2.699 3.301 4 O -0.956 6.956 5 O -0.958 6.958 6 C -0.686 4.686 7 C -0.015 4.015 8 C -0.139 4.139 9 C 0.002 3.998 10 C -0.430 4.430 11 S 1.236 4.764 12 O -0.837 6.837 13 C -0.433 4.433 14 C -0.094 4.094 15 C 0.027 3.973 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.134 4.134 25 C -0.016 4.016 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.419 0.581 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.014 0.986 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.131 0.869 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -26.419 -17.772 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.946 6.946 5 O -0.948 6.948 6 C -0.774 4.774 7 C -0.034 4.034 8 C -0.159 4.159 9 C 0.000 4.000 10 C -0.563 4.563 11 S 1.436 4.564 12 O -0.832 6.832 13 C -0.572 4.572 14 C -0.133 4.133 15 C -0.011 4.011 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.154 4.154 25 C -0.036 4.036 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.253 0.747 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.849 -25.514 -18.965 31.802 hybrid contribution -2.214 0.975 1.372 2.781 sum -1.365 -24.539 -17.593 30.225 Atomic orbital electron populations 1.21508 0.78391 1.04324 1.02169 1.55332 1.16240 1.24422 1.92113 1.01778 0.72868 0.72663 0.73941 1.93597 1.78696 1.68329 1.53961 1.93599 1.30634 1.83397 1.87208 1.30795 1.07939 1.16940 1.21720 1.20900 0.95929 0.95600 0.91011 1.21246 0.97922 0.98015 0.98711 1.19541 0.93641 0.93274 0.93519 1.27017 1.11540 1.18379 0.99371 1.70854 1.13901 0.86307 0.85346 1.93132 1.79432 1.61543 1.49105 1.27684 1.07454 1.07267 1.14753 1.21332 0.98974 0.90963 1.02039 1.19091 0.96722 0.95563 0.89741 1.21267 1.28867 1.03637 1.02401 0.92508 1.25033 0.95301 0.98099 0.96057 1.69962 1.37359 1.38485 1.07728 0.86568 0.79879 0.84155 0.77258 1.20683 1.21175 1.19744 1.21254 1.00932 1.00496 0.92725 1.20890 0.93435 0.91417 0.97831 0.92102 0.91224 0.89829 0.74719 0.83899 0.83930 0.88137 0.84985 0.89952 0.86672 0.92032 0.92760 0.96754 0.96215 0.92969 0.85094 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.14 59.85 0.67 0.97 16 2 N -1.12 -5.55 6.19 -16.63 -0.10 -5.66 16 3 S 2.70 23.25 5.74 -107.50 -0.62 22.63 16 4 O -0.96 -11.19 17.01 -57.17 -0.97 -12.16 16 5 O -0.96 -10.50 17.28 -57.17 -0.99 -11.49 16 6 C -0.69 -6.22 5.95 -39.58 -0.24 -6.45 16 7 C -0.02 -0.12 9.52 -39.58 -0.38 -0.50 16 8 C -0.14 -1.11 9.70 -39.58 -0.38 -1.50 16 9 C 0.00 0.02 5.14 -104.63 -0.54 -0.52 16 10 C -0.43 -3.91 6.05 36.00 0.22 -3.69 16 11 S 1.24 14.87 13.14 -107.50 -1.41 13.46 16 12 O -0.84 -15.45 18.14 -35.23 -0.64 -16.09 16 13 C -0.43 -6.41 5.92 37.16 0.22 -6.19 16 14 C -0.09 -1.87 5.16 -26.73 -0.14 -2.01 16 15 C 0.03 0.69 4.97 -27.89 -0.14 0.55 16 16 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16 25 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 26 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 28 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.42 1.19 8.96 -34.46 -0.31 0.88 16 30 H 0.14 0.88 7.62 -52.49 -0.40 0.48 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.10 0.97 8.09 -51.92 -0.42 0.55 16 33 H 0.13 0.76 8.09 -51.92 -0.42 0.34 16 34 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.11 1.39 8.14 -51.92 -0.42 0.97 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.14 1.15 7.62 -52.49 -0.40 0.75 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -40.73 384.76 -11.23 -51.96 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -6.14 Total: -3.77 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: -1.88 Total: -35.28 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.63 Total: -31.66 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -2.60 Total: -39.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 38.12 SS G_CDS: -2.03 Total: 36.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -40.73 -11.23 -51.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596042399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.320 kcal (2) G-P(sol) polarization free energy of solvation -40.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds