Wall clock time and date at job start Wed Apr 1 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65599 * 119.99989 * 2 1 4 4 O 1.42107 * 106.40481 * 311.46187 * 3 2 1 5 5 O 1.42103 * 106.40338 * 178.53953 * 3 2 1 6 6 C 1.76203 * 107.22020 * 65.00003 * 3 2 1 7 7 C 1.38235 * 120.00231 * 89.99610 * 6 3 2 8 8 C 1.38234 * 120.00220 * 179.97438 * 7 6 3 9 9 C 1.38233 * 120.00037 * 0.28719 * 8 7 6 10 10 C 1.50693 * 120.00207 * 179.72405 * 9 8 7 11 11 S 1.81401 * 109.47312 * 89.99480 * 10 9 8 12 12 O 1.42103 * 109.46977 * 63.61397 * 11 10 9 13 13 C 1.81395 * 103.00006 * 180.02562 * 11 10 9 14 14 C 1.53007 * 109.47298 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47520 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47472 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99830 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00396 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46889 * 90.00024 * 20 18 16 22 22 H 1.48500 * 109.47012 * 209.99856 * 20 18 16 23 23 H 1.48496 * 109.47230 * 329.99928 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 9 8 7 25 25 C 1.38234 * 120.00095 * 0.43554 * 24 9 8 26 26 H 1.08995 * 109.46835 * 300.00287 * 1 2 3 27 27 H 1.09000 * 109.46726 * 60.00031 * 1 2 3 28 28 H 1.08993 * 109.47002 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00332 * 179.97438 * 2 1 3 30 30 H 1.07999 * 119.99770 * 0.02562 * 7 6 3 31 31 H 1.08002 * 119.99744 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.47097 * 209.99342 * 10 9 8 33 33 H 1.09001 * 109.47081 * 329.99847 * 10 9 8 34 34 H 1.09000 * 109.47424 * 299.99435 * 13 11 10 35 35 H 1.09004 * 109.47564 * 60.00160 * 13 11 10 36 36 H 1.09005 * 109.46803 * 300.00244 * 14 13 11 37 37 H 1.08996 * 109.46994 * 59.99585 * 14 13 11 38 38 H 1.08998 * 109.46848 * 300.00090 * 15 14 13 39 39 H 1.08998 * 109.46897 * 59.99837 * 15 14 13 40 40 H 0.96995 * 120.00083 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.00354 * 180.21032 * 24 9 8 42 42 H 1.08001 * 120.00324 * 179.78922 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6739 1.1003 0.0347 6 6 1.9379 2.2415 1.5254 7 6 2.7381 2.0157 2.6297 8 6 2.4598 2.6495 3.8262 9 6 1.3777 3.5046 3.9201 10 6 1.0706 4.1908 5.2261 11 16 1.9451 5.7785 5.2953 12 8 1.4601 6.6316 4.2676 13 6 1.4591 6.4419 6.9121 14 6 2.1249 7.8028 7.1262 15 6 1.7156 8.3621 8.4901 16 6 2.3708 9.7027 8.7006 17 1 3.0146 10.1148 7.9376 18 6 2.1486 10.4031 9.8672 19 7 1.3643 9.9015 10.7961 20 14 2.9615 12.0646 10.1284 21 1 2.0749 13.1366 9.6084 22 1 3.1974 12.2776 11.5790 23 1 4.2581 12.1004 9.4055 24 6 0.5798 3.7335 2.8147 25 6 0.8586 3.1004 1.6179 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.9501 -0.8400 0.0004 30 1 3.5812 1.3447 2.5574 31 1 3.0853 2.4734 4.6888 32 1 -0.0029 4.3637 5.3020 33 1 1.3965 3.5601 6.0533 34 1 0.3759 6.5586 6.9464 35 1 1.7756 5.7548 7.6969 36 1 3.2082 7.6866 7.0918 37 1 1.8081 8.4897 6.3414 38 1 0.6323 8.4781 8.5249 39 1 2.0328 7.6750 9.2746 40 1 1.2082 10.3941 11.6170 41 1 -0.2637 4.4042 2.8870 42 1 0.2332 3.2765 0.7552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596042399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:46 Heat of formation + Delta-G solvation = -132.145589 kcal Electronic energy + Delta-G solvation = -24386.532475 eV Core-core repulsion = 20583.504793 eV Total energy + Delta-G solvation = -3803.027682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38363 -38.38538 -37.00398 -36.87958 -36.31892 -35.90310 -34.15180 -34.02792 -32.09996 -29.50484 -28.50957 -26.85693 -25.41194 -23.93592 -23.19728 -22.00496 -20.61070 -19.12129 -18.75421 -18.56640 -18.29055 -17.38165 -16.76260 -16.72323 -16.63238 -16.28850 -16.14098 -15.70109 -15.53022 -15.17870 -14.73587 -14.65405 -14.46311 -14.31388 -14.03698 -13.84514 -13.77573 -13.39842 -13.28086 -13.25149 -13.18640 -12.99553 -12.72398 -12.56021 -12.53877 -12.48730 -12.18275 -12.00487 -11.83240 -11.61946 -11.33675 -11.08000 -10.57929 -10.56696 -10.14285 -10.06499 -9.18550 -8.22616 -6.33773 -0.69339 -0.39377 0.25932 0.61673 1.38981 1.39935 1.51488 1.67343 2.01564 2.39397 2.45469 2.74158 2.80713 3.10388 3.27777 3.51985 3.70746 3.89278 4.04115 4.12379 4.19166 4.22723 4.30490 4.47409 4.59102 4.61562 4.64004 4.78138 4.84512 4.87700 4.93195 4.98551 5.04827 5.10164 5.14596 5.17628 5.37714 5.48562 5.68668 5.79783 5.82189 6.11155 6.21861 6.82937 7.35597 8.88737 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.035234 B = 0.001722 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.506781 B =16253.157939 C =16428.267982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.108 6.108 3 S 2.717 3.283 4 O -0.992 6.992 5 O -0.982 6.982 6 C -0.687 4.687 7 C -0.022 4.022 8 C -0.131 4.131 9 C -0.017 4.017 10 C -0.417 4.417 11 S 1.293 4.707 12 O -0.907 6.907 13 C -0.437 4.437 14 C -0.090 4.090 15 C 0.027 3.973 16 C -0.549 4.549 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.278 1.278 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.158 4.158 25 C -0.030 4.030 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.431 0.569 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.095 0.905 33 H 0.179 0.821 34 H 0.064 0.936 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.029 0.971 38 H -0.020 1.020 39 H 0.011 0.989 40 H 0.264 0.736 41 H 0.119 0.881 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -28.540 -17.390 33.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.871 5.871 3 S 2.806 3.194 4 O -0.982 6.982 5 O -0.972 6.972 6 C -0.776 4.776 7 C -0.041 4.041 8 C -0.150 4.150 9 C -0.018 4.018 10 C -0.552 4.552 11 S 1.495 4.505 12 O -0.903 6.903 13 C -0.574 4.574 14 C -0.129 4.129 15 C -0.011 4.011 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.788 3.212 21 H -0.204 1.204 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.178 4.178 25 C -0.049 4.049 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.268 0.732 30 H 0.184 0.816 31 H 0.202 0.798 32 H 0.114 0.886 33 H 0.197 0.803 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.047 0.953 38 H -0.001 1.001 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.316 -27.605 -18.578 33.355 hybrid contribution -2.737 1.441 1.204 3.320 sum -0.421 -26.164 -17.374 31.410 Atomic orbital electron populations 1.21747 0.77280 1.06179 1.02193 1.54985 1.16819 1.23614 1.91689 1.01015 0.72177 0.72829 0.73363 1.93553 1.79199 1.69853 1.55552 1.93558 1.32347 1.83849 1.87478 1.30867 1.07781 1.16745 1.22184 1.21323 0.96212 0.95750 0.90778 1.21720 0.97111 0.96256 0.99938 1.19695 0.94560 0.94377 0.93201 1.26884 1.11068 1.16187 1.01067 1.70005 1.12945 0.85718 0.81803 1.93019 1.81140 1.64583 1.51573 1.27685 1.05898 1.05449 1.18384 1.21127 1.00838 0.93175 0.97741 1.19020 0.94337 0.94952 0.92788 1.21756 1.29140 1.05113 1.02670 0.92273 1.25974 0.95868 1.02195 0.95787 1.70081 1.38609 1.40211 1.08273 0.85468 0.79176 0.78993 0.77552 1.20390 1.20311 1.18454 1.21381 1.01472 1.01065 0.93852 1.20991 0.94166 0.91901 0.97848 0.91663 0.91803 0.87044 0.73223 0.81562 0.79808 0.88591 0.80304 0.91659 0.83262 0.89670 0.95252 1.00144 0.97101 0.92717 0.86270 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.14 127.77 1.42 1.84 16 2 N -1.11 -9.19 6.19 -206.54 -1.28 -10.47 16 3 S 2.72 44.64 5.74 -56.49 -0.32 44.32 16 4 O -0.99 -23.40 17.01 -128.00 -2.18 -25.57 16 5 O -0.98 -20.43 17.28 -128.00 -2.21 -22.64 16 6 C -0.69 -11.61 5.95 22.27 0.13 -11.47 16 7 C -0.02 -0.29 9.52 22.27 0.21 -0.08 16 8 C -0.13 -1.61 9.70 22.27 0.22 -1.39 16 9 C -0.02 -0.29 5.14 -19.87 -0.10 -0.39 16 10 C -0.42 -6.36 6.05 71.23 0.43 -5.92 16 11 S 1.29 29.25 13.14 -56.49 -0.74 28.51 16 12 O -0.91 -34.04 18.14 -148.98 -2.70 -36.75 16 13 C -0.44 -12.55 5.92 71.98 0.43 -12.12 16 14 C -0.09 -3.61 5.16 30.59 0.16 -3.45 16 15 C 0.03 1.42 4.97 29.84 0.15 1.57 16 16 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 19 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 20 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.16 -3.36 9.70 22.27 0.22 -3.14 16 25 C -0.03 -0.58 9.52 22.27 0.21 -0.36 16 26 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.46 8.10 -2.39 -0.02 0.44 16 28 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.43 1.55 8.96 -96.75 -0.87 0.69 16 30 H 0.17 1.46 7.62 -2.91 -0.02 1.43 16 31 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 33 H 0.18 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 2.49 7.62 -2.91 -0.02 2.47 16 Total: -1.00 -91.81 384.76 -2.80 -94.61 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 0.16 Total: 3.42 kcal Atomic # 6 Polarization: -69.90 SS G_CDS: 4.17 Total: -65.73 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.99 Total: -66.62 kcal Atomic # 8 Polarization: -77.87 SS G_CDS: -7.09 Total: -84.96 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 73.89 SS G_CDS: -1.07 Total: 72.83 kcal Total: -91.81 -2.80 -94.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596042399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.537 kcal (2) G-P(sol) polarization free energy of solvation -91.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds