Wall clock time and date at job start Wed Apr 1 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81392 * 103.00223 * 2 1 4 4 C 1.53001 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47065 * 55.24289 * 4 3 2 6 6 C 1.52996 * 109.47465 * 175.24296 * 4 3 2 7 7 C 1.52992 * 109.47463 * 185.00343 * 6 4 3 8 8 O 1.42903 * 109.47386 * 180.02562 * 7 6 4 9 9 N 1.46498 * 109.47153 * 295.24683 * 4 3 2 10 10 S 1.65593 * 120.00425 * 113.11769 * 9 4 3 11 11 O 1.42101 * 106.40247 * 312.17167 * 10 9 4 12 12 O 1.42094 * 106.40759 * 179.25042 * 10 9 4 13 13 C 1.76204 * 107.21814 * 65.71001 * 10 9 4 14 14 C 1.37646 * 120.13028 * 244.57261 * 13 10 9 15 15 C 1.38613 * 120.24914 * 180.32055 * 14 13 10 16 16 C 1.38654 * 120.49862 * 359.66793 * 15 14 13 17 17 C 1.37596 * 120.25345 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12827 * 64.26189 * 13 10 9 19 19 C 1.41397 * 120.24219 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00298 * 332.89543 * 19 18 13 21 21 C 1.39949 * 119.99999 * 152.89462 * 19 18 13 22 22 N 1.30826 * 119.99848 * 335.37453 * 21 19 18 23 23 Si 1.86799 * 119.99813 * 155.36488 * 21 19 18 24 24 H 1.48504 * 109.47074 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47260 * 300.00581 * 23 21 19 26 26 H 1.48503 * 109.46718 * 60.00474 * 23 21 19 27 27 H 1.08998 * 109.46971 * 300.00751 * 1 2 3 28 28 H 1.09010 * 109.46640 * 59.99867 * 1 2 3 29 29 H 1.08993 * 109.47812 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46999 * 60.00288 * 3 2 1 31 31 H 1.09004 * 109.47351 * 300.00203 * 3 2 1 32 32 H 1.09005 * 109.47165 * 305.00574 * 6 4 3 33 33 H 1.09003 * 109.47245 * 65.00117 * 6 4 3 34 34 H 1.09003 * 109.47135 * 299.99714 * 7 6 4 35 35 H 1.09000 * 109.47434 * 59.99322 * 7 6 4 36 36 H 0.96704 * 113.99782 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99519 * 293.11731 * 9 4 3 38 38 H 1.08004 * 119.87399 * 0.02562 * 14 13 10 39 39 H 1.07995 * 119.74744 * 179.69281 * 15 14 13 40 40 H 1.08004 * 119.87401 * 180.02562 * 16 15 14 41 41 H 1.07995 * 120.13049 * 180.02562 * 17 16 15 42 42 H 0.96998 * 119.99920 * 354.47433 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1698 1.3985 -0.8434 6 6 4.0873 3.4256 -0.1190 7 6 5.6034 3.5888 -0.2438 8 8 5.9255 4.9766 -0.3550 9 7 4.2935 1.4096 1.2502 10 16 5.2581 0.0639 1.2246 11 8 4.5870 -0.8956 0.4195 12 8 5.6399 -0.1819 2.5711 13 6 6.7319 0.4950 0.3604 14 6 7.0362 -0.1166 -0.8345 15 6 8.1983 0.2158 -1.5131 16 6 9.0631 1.1712 -1.0015 17 6 8.7761 1.8000 0.1883 18 6 7.5990 1.4705 0.8859 19 6 7.2932 2.1106 2.1090 20 1 6.2651 2.2094 2.4246 21 6 8.3229 2.6160 2.9109 22 7 9.5278 2.1142 2.8217 23 14 7.9768 4.0075 4.1082 24 1 9.2245 4.3584 4.8332 25 1 7.4888 5.1940 3.3605 26 1 6.9423 3.5763 5.0824 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8033 2.2370 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 3.6031 3.8410 -1.0028 33 1 3.7370 3.9525 0.7686 34 1 6.0876 3.1735 0.6400 35 1 5.9537 3.0619 -1.1313 36 1 6.8723 5.1552 -0.4381 37 1 4.0933 1.8469 2.0926 38 1 6.3694 -0.8618 -1.2426 39 1 8.4315 -0.2727 -2.4476 40 1 9.9656 1.4227 -1.5388 41 1 9.4509 2.5441 0.5847 42 1 9.6904 1.3403 2.2600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601355447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:17 Heat of formation + Delta-G solvation = -117.820680 kcal Electronic energy + Delta-G solvation = -27895.895968 eV Core-core repulsion = 24093.489461 eV Total energy + Delta-G solvation = -3802.406507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -38.14196 -37.41177 -36.22564 -35.58299 -34.81966 -34.18155 -30.57980 -30.36823 -29.57202 -29.17928 -28.42434 -25.49702 -23.06802 -21.88773 -21.27201 -20.96956 -18.88998 -18.39773 -16.97234 -16.93354 -16.39120 -15.98269 -15.55656 -15.01864 -14.91936 -14.29589 -14.22404 -14.09023 -13.89317 -13.74109 -13.59054 -13.36372 -13.17841 -12.92149 -12.60887 -12.29580 -12.06247 -11.77674 -11.67389 -11.28851 -11.21904 -11.20423 -11.07563 -10.97717 -10.93618 -10.60565 -10.54275 -10.48998 -9.91332 -9.66347 -9.56581 -9.47518 -9.20391 -8.96644 -8.28346 -7.86688 -7.54684 -7.43100 -4.92871 1.47650 1.81814 2.16363 2.58253 2.75142 3.04145 3.12757 3.22260 3.81179 3.82493 4.26038 4.40841 4.70813 4.93009 5.04378 5.06868 5.12606 5.17666 5.26469 5.39365 5.45271 5.60228 5.65767 5.69527 5.86996 5.91327 6.00257 6.01834 6.13504 6.24893 6.42468 6.58891 6.61704 6.80327 7.01755 7.19947 7.30177 7.41215 7.51975 7.57276 7.72391 7.88023 8.03570 8.25257 8.47686 9.70547 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.005335 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.268776 B = 5247.397633 C = 5661.010163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.201 6.201 3 C -0.108 4.108 4 C 0.183 3.817 5 H 0.097 0.903 6 C -0.119 4.119 7 C 0.049 3.951 8 O -0.581 6.581 9 N -1.114 6.114 10 S 2.696 3.304 11 O -0.974 6.974 12 O -0.966 6.966 13 C -0.785 4.785 14 C 0.015 3.985 15 C -0.264 4.264 16 C -0.053 4.053 17 C -0.217 4.217 18 C 0.168 3.832 19 C -0.498 4.498 20 H 0.088 0.912 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 1.057 2.943 24 H -0.270 1.270 25 H -0.267 1.267 26 H -0.268 1.268 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.378 0.622 37 H 0.412 0.588 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 3.845 -4.288 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.025 5.975 3 C -0.259 4.259 4 C 0.073 3.927 5 H 0.115 0.885 6 C -0.160 4.160 7 C -0.028 4.028 8 O -0.387 6.387 9 N -0.869 5.869 10 S 2.793 3.207 11 O -0.964 6.964 12 O -0.957 6.957 13 C -0.879 4.879 14 C -0.005 4.005 15 C -0.284 4.284 16 C -0.072 4.072 17 C -0.237 4.237 18 C 0.163 3.837 19 C -0.525 4.525 20 H 0.106 0.894 21 C -0.180 4.180 22 N -0.389 5.389 23 Si 0.879 3.121 24 H -0.194 1.194 25 H -0.192 1.192 26 H -0.193 1.193 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.225 0.775 37 H 0.246 0.754 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.435 3.065 -2.925 10.343 hybrid contribution -0.465 0.508 -1.374 1.537 sum -9.900 3.574 -4.299 11.369 Atomic orbital electron populations 1.23489 0.97758 1.06056 1.04149 1.88289 1.03053 1.08294 1.97899 1.23951 1.00142 0.96598 1.05165 1.20169 0.90290 0.94817 0.87404 0.88464 1.21795 0.96652 0.94475 1.03071 1.22753 0.94942 0.81937 1.03146 1.86276 1.29578 1.25579 1.97239 1.55870 1.66907 1.50626 1.13497 1.01351 0.73333 0.72282 0.73778 1.93501 1.73882 1.57799 1.71216 1.93544 1.83260 1.83400 1.35448 1.29976 1.25237 1.17881 1.14813 1.20359 0.94874 0.93788 0.91460 1.20460 0.98849 1.06596 1.02526 1.20838 0.96666 0.94651 0.95015 1.21314 1.00863 1.04502 0.96998 1.16937 0.89795 0.85975 0.91013 1.20859 0.97651 1.31352 1.02625 0.89444 1.27092 0.91596 1.00501 0.98829 1.70455 1.22491 1.17581 1.28401 0.83746 0.77651 0.74768 0.75982 1.19440 1.19196 1.19320 0.91052 0.91094 0.88448 0.89632 0.89355 0.90902 0.90662 0.88617 0.94138 0.77497 0.75423 0.87129 0.88563 0.88689 0.87157 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.76 101.05 1.09 -0.41 16 2 S -0.20 -2.97 20.18 -107.50 -2.17 -5.14 16 3 C -0.11 -1.32 5.60 37.16 0.21 -1.11 16 4 C 0.18 2.64 2.26 -67.93 -0.15 2.48 16 5 H 0.10 1.51 7.77 -51.93 -0.40 1.11 16 6 C -0.12 -1.65 5.26 -26.74 -0.14 -1.79 16 7 C 0.05 0.82 6.41 37.15 0.24 1.06 16 8 O -0.58 -9.47 13.66 -35.23 -0.48 -9.95 16 9 N -1.11 -18.51 3.65 -4.89 -0.02 -18.53 16 10 S 2.70 56.59 4.81 -107.50 -0.52 56.07 16 11 O -0.97 -21.12 14.65 -57.17 -0.84 -21.96 16 12 O -0.97 -23.70 16.61 -57.17 -0.95 -24.65 16 13 C -0.78 -17.37 5.71 -38.87 -0.22 -17.59 16 14 C 0.02 0.32 9.54 -39.66 -0.38 -0.06 16 15 C -0.26 -5.37 10.05 -39.29 -0.39 -5.76 16 16 C -0.05 -1.08 10.02 -39.66 -0.40 -1.48 16 17 C -0.22 -4.82 7.94 -38.87 -0.31 -5.13 16 18 C 0.17 3.84 3.65 -106.82 -0.39 3.45 16 19 C -0.50 -11.47 5.73 -37.74 -0.22 -11.69 16 20 H 0.09 1.92 5.37 -52.49 -0.28 1.63 16 21 C 0.05 1.04 4.95 -17.34 -0.09 0.96 16 22 N -0.77 -18.63 12.36 55.55 0.69 -17.94 16 23 Si 1.06 19.71 30.00 -169.99 -5.10 14.61 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 25 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 26 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.78 3.28 -51.93 -0.17 1.61 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.38 5.15 9.12 45.56 0.42 5.57 16 37 H 0.41 6.16 8.64 -34.47 -0.30 5.87 16 38 H 0.11 2.21 7.33 -52.48 -0.38 1.82 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.11 2.48 6.57 -52.49 -0.34 2.14 16 42 H 0.30 7.64 6.67 -40.82 -0.27 7.37 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -29.74 361.11 -9.86 -39.60 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -4.76 Total: 19.53 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: -1.15 Total: -37.07 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.67 Total: -36.47 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -2.27 Total: -56.57 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.10 Total: 14.61 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -2.69 Total: 50.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.74 -9.86 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601355447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.218 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds