Wall clock time and date at job start Wed Apr 1 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81392 * 103.00223 * 2 1 4 4 C 1.53001 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47065 * 55.24289 * 4 3 2 6 6 C 1.52996 * 109.47465 * 175.24296 * 4 3 2 7 7 C 1.52992 * 109.47463 * 185.00343 * 6 4 3 8 8 O 1.42903 * 109.47386 * 180.02562 * 7 6 4 9 9 N 1.46498 * 109.47153 * 295.24683 * 4 3 2 10 10 S 1.65593 * 120.00425 * 113.11769 * 9 4 3 11 11 O 1.42101 * 106.40247 * 312.17167 * 10 9 4 12 12 O 1.42094 * 106.40759 * 179.25042 * 10 9 4 13 13 C 1.76204 * 107.21814 * 65.71001 * 10 9 4 14 14 C 1.37646 * 120.13028 * 244.57261 * 13 10 9 15 15 C 1.38613 * 120.24914 * 180.32055 * 14 13 10 16 16 C 1.38654 * 120.49862 * 359.66793 * 15 14 13 17 17 C 1.37596 * 120.25345 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12827 * 64.26189 * 13 10 9 19 19 C 1.41397 * 120.24219 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00298 * 332.89543 * 19 18 13 21 21 C 1.39949 * 119.99999 * 152.89462 * 19 18 13 22 22 N 1.30826 * 119.99848 * 335.37453 * 21 19 18 23 23 Si 1.86799 * 119.99813 * 155.36488 * 21 19 18 24 24 H 1.48504 * 109.47074 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47260 * 300.00581 * 23 21 19 26 26 H 1.48503 * 109.46718 * 60.00474 * 23 21 19 27 27 H 1.08998 * 109.46971 * 300.00751 * 1 2 3 28 28 H 1.09010 * 109.46640 * 59.99867 * 1 2 3 29 29 H 1.08993 * 109.47812 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46999 * 60.00288 * 3 2 1 31 31 H 1.09004 * 109.47351 * 300.00203 * 3 2 1 32 32 H 1.09005 * 109.47165 * 305.00574 * 6 4 3 33 33 H 1.09003 * 109.47245 * 65.00117 * 6 4 3 34 34 H 1.09003 * 109.47135 * 299.99714 * 7 6 4 35 35 H 1.09000 * 109.47434 * 59.99322 * 7 6 4 36 36 H 0.96704 * 113.99782 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99519 * 293.11731 * 9 4 3 38 38 H 1.08004 * 119.87399 * 0.02562 * 14 13 10 39 39 H 1.07995 * 119.74744 * 179.69281 * 15 14 13 40 40 H 1.08004 * 119.87401 * 180.02562 * 16 15 14 41 41 H 1.07995 * 120.13049 * 180.02562 * 17 16 15 42 42 H 0.96998 * 119.99920 * 354.47433 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.1698 1.3985 -0.8434 6 6 4.0873 3.4256 -0.1190 7 6 5.6034 3.5888 -0.2438 8 8 5.9255 4.9766 -0.3550 9 7 4.2935 1.4096 1.2502 10 16 5.2581 0.0639 1.2246 11 8 4.5870 -0.8956 0.4195 12 8 5.6399 -0.1819 2.5711 13 6 6.7319 0.4950 0.3604 14 6 7.0362 -0.1166 -0.8345 15 6 8.1983 0.2158 -1.5131 16 6 9.0631 1.1712 -1.0015 17 6 8.7761 1.8000 0.1883 18 6 7.5990 1.4705 0.8859 19 6 7.2932 2.1106 2.1090 20 1 6.2651 2.2094 2.4246 21 6 8.3229 2.6160 2.9109 22 7 9.5278 2.1142 2.8217 23 14 7.9768 4.0075 4.1082 24 1 9.2245 4.3584 4.8332 25 1 7.4888 5.1940 3.3605 26 1 6.9423 3.5763 5.0824 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8033 2.2370 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 3.6031 3.8410 -1.0028 33 1 3.7370 3.9525 0.7686 34 1 6.0876 3.1735 0.6400 35 1 5.9537 3.0619 -1.1313 36 1 6.8723 5.1552 -0.4381 37 1 4.0933 1.8469 2.0926 38 1 6.3694 -0.8618 -1.2426 39 1 8.4315 -0.2727 -2.4476 40 1 9.9656 1.4227 -1.5388 41 1 9.4509 2.5441 0.5847 42 1 9.6904 1.3403 2.2600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601355447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:16 Heat of formation + Delta-G solvation = -139.293517 kcal Electronic energy + Delta-G solvation = -27896.827100 eV Core-core repulsion = 24093.489461 eV Total energy + Delta-G solvation = -3803.337639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.75955 -38.72128 -37.94382 -36.86514 -36.57970 -35.88387 -32.05304 -31.86383 -31.25384 -30.16151 -29.37469 -27.20778 -24.27044 -23.56093 -22.96281 -22.17061 -20.45921 -20.07485 -18.53787 -18.24852 -17.85835 -17.38756 -16.81373 -16.62085 -16.50781 -15.72529 -15.58967 -15.42862 -15.26152 -15.00147 -14.87668 -14.66037 -14.30425 -14.16230 -14.00096 -13.89192 -13.37279 -13.13859 -12.99496 -12.91944 -12.81860 -12.76642 -12.67715 -12.42997 -12.27222 -12.19026 -12.00132 -11.75969 -11.57589 -11.21693 -11.02460 -10.66468 -10.57907 -10.38886 -9.97207 -9.56651 -9.30942 -8.53912 -6.68194 -0.14491 0.45604 0.85241 0.89107 1.51829 1.63831 1.77547 1.82470 2.28831 2.32785 2.58854 3.04004 3.25383 3.36971 3.83583 3.92197 3.97378 4.15182 4.24886 4.31549 4.32239 4.35666 4.41416 4.42792 4.64358 4.65711 4.75234 4.80613 4.85634 4.94326 4.94476 5.10792 5.25821 5.29338 5.35391 5.50507 5.63343 5.67514 5.87116 5.99758 6.15739 6.22107 6.55076 6.77032 6.84998 7.90937 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.005335 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.268776 B = 5247.397633 C = 5661.010163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.298 6.298 3 C -0.088 4.088 4 C 0.181 3.819 5 H 0.083 0.917 6 C -0.111 4.111 7 C 0.048 3.952 8 O -0.586 6.586 9 N -1.102 6.102 10 S 2.713 3.287 11 O -0.983 6.983 12 O -1.008 7.008 13 C -0.796 4.796 14 C 0.000 4.000 15 C -0.261 4.261 16 C -0.053 4.053 17 C -0.233 4.233 18 C 0.160 3.840 19 C -0.519 4.519 20 H 0.092 0.908 21 C 0.014 3.986 22 N -0.795 5.795 23 Si 1.096 2.904 24 H -0.273 1.273 25 H -0.246 1.246 26 H -0.261 1.261 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.387 0.613 37 H 0.421 0.579 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 5.311 -5.175 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.072 6.072 3 C -0.237 4.237 4 C 0.072 3.928 5 H 0.101 0.899 6 C -0.152 4.152 7 C -0.029 4.029 8 O -0.393 6.393 9 N -0.861 5.861 10 S 2.808 3.192 11 O -0.973 6.973 12 O -0.998 6.998 13 C -0.890 4.890 14 C -0.019 4.019 15 C -0.281 4.281 16 C -0.072 4.072 17 C -0.253 4.253 18 C 0.155 3.845 19 C -0.545 4.545 20 H 0.110 0.890 21 C -0.206 4.206 22 N -0.416 5.416 23 Si 0.913 3.087 24 H -0.197 1.197 25 H -0.170 1.170 26 H -0.185 1.185 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.235 0.765 37 H 0.256 0.744 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.391 4.530 -3.832 12.844 hybrid contribution 0.076 -0.010 -1.254 1.256 sum -11.315 4.520 -5.086 13.203 Atomic orbital electron populations 1.23464 0.92941 1.06934 1.05764 1.88574 1.08563 1.11906 1.98184 1.23870 0.98091 0.94281 1.07505 1.20334 0.91884 0.94893 0.85642 0.89904 1.21754 0.94735 0.93949 1.04746 1.22699 0.96831 0.81868 1.01530 1.86250 1.30635 1.25246 1.97143 1.55450 1.65989 1.49751 1.14955 1.00658 0.73117 0.72848 0.72529 1.93493 1.73812 1.58882 1.71121 1.93484 1.84093 1.84617 1.37634 1.30206 1.26007 1.17645 1.15102 1.20617 0.95639 0.94134 0.91535 1.20831 0.98035 1.05981 1.03268 1.21169 0.97558 0.93989 0.94438 1.21352 1.00945 1.05110 0.97887 1.17098 0.90103 0.86005 0.91251 1.21001 0.97973 1.32468 1.03103 0.89003 1.28287 0.91099 1.01640 0.99617 1.70565 1.23484 1.17959 1.29592 0.83292 0.77581 0.73230 0.74629 1.19713 1.17002 1.18517 0.89626 0.89195 0.87996 0.87640 0.86524 0.88605 0.89371 0.90529 0.95590 0.76469 0.74354 0.86208 0.85741 0.85929 0.88087 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 10.76 113.37 1.22 -0.95 16 2 S -0.30 -8.38 20.18 -56.49 -1.14 -9.52 16 3 C -0.09 -1.89 5.60 71.98 0.40 -1.48 16 4 C 0.18 4.90 2.26 44.99 0.10 5.00 16 5 H 0.08 2.51 7.77 -2.39 -0.02 2.50 16 6 C -0.11 -2.79 5.26 30.59 0.16 -2.63 16 7 C 0.05 1.56 6.41 71.98 0.46 2.02 16 8 O -0.59 -18.19 13.66 -148.98 -2.04 -20.22 16 9 N -1.10 -35.86 3.65 -169.40 -0.62 -36.48 16 10 S 2.71 115.12 4.81 -56.49 -0.27 114.85 16 11 O -0.98 -43.06 14.65 -128.00 -1.88 -44.93 16 12 O -1.01 -50.66 16.61 -128.00 -2.13 -52.79 16 13 C -0.80 -35.62 5.71 22.73 0.13 -35.49 16 14 C 0.00 0.02 9.54 22.22 0.21 0.23 16 15 C -0.26 -10.29 10.05 22.46 0.23 -10.06 16 16 C -0.05 -2.13 10.02 22.22 0.22 -1.91 16 17 C -0.23 -10.50 7.94 22.73 0.18 -10.32 16 18 C 0.16 7.45 3.65 -21.29 -0.08 7.37 16 19 C -0.52 -24.26 5.73 23.46 0.13 -24.13 16 20 H 0.09 4.07 5.37 -2.91 -0.02 4.06 16 21 C 0.01 0.63 4.95 85.26 0.42 1.05 16 22 N -0.79 -39.68 12.36 21.83 0.27 -39.41 16 23 Si 1.10 39.48 30.00 68.60 2.06 41.54 16 24 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.25 -7.97 7.11 99.48 0.71 -7.27 16 26 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.82 3.28 -2.39 -0.01 2.81 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.39 10.20 9.12 -74.05 -0.68 9.53 16 37 H 0.42 12.22 8.64 -96.74 -0.84 11.38 16 38 H 0.12 4.75 7.33 -2.91 -0.02 4.73 16 39 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.10 4.68 6.57 -2.91 -0.02 4.66 16 42 H 0.29 15.09 6.67 -92.71 -0.62 14.47 16 Total: -1.00 -65.51 361.11 -2.24 -67.75 By element: Atomic # 1 Polarization: 50.79 SS G_CDS: -0.29 Total: 50.50 kcal Atomic # 6 Polarization: -75.09 SS G_CDS: 3.80 Total: -71.29 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -0.35 Total: -75.88 kcal Atomic # 8 Polarization: -111.91 SS G_CDS: -6.04 Total: -117.95 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.06 Total: 41.54 kcal Atomic # 16 Polarization: 106.75 SS G_CDS: -1.41 Total: 105.34 kcal Total: -65.51 -2.24 -67.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601355447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.543 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds