Wall clock time and date at job start Wed Apr 1 2020 03:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 102.99824 * 2 1 4 4 C 1.52993 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47520 * 304.99958 * 4 3 2 6 6 C 1.53002 * 109.47481 * 185.00215 * 4 3 2 7 7 C 1.52991 * 109.47340 * 173.56315 * 6 4 3 8 8 O 1.42902 * 109.47317 * 184.62610 * 7 6 4 9 9 N 1.46497 * 109.47213 * 65.00010 * 4 3 2 10 10 S 1.65605 * 120.00206 * 234.74619 * 9 4 3 11 11 O 1.42097 * 106.39855 * 313.47682 * 10 9 4 12 12 O 1.42097 * 106.39886 * 180.55847 * 10 9 4 13 13 C 1.76197 * 107.21621 * 67.01821 * 10 9 4 14 14 C 1.37635 * 120.12787 * 244.74118 * 13 10 9 15 15 C 1.38611 * 120.24697 * 180.32174 * 14 13 10 16 16 C 1.38655 * 120.50376 * 359.67578 * 15 14 13 17 17 C 1.37594 * 120.24382 * 359.97438 * 16 15 14 18 18 C 1.40699 * 120.12800 * 64.43796 * 13 10 9 19 19 C 1.41394 * 120.24572 * 359.97438 * 18 13 10 20 20 H 1.08003 * 119.99955 * 334.69445 * 19 18 13 21 21 C 1.39940 * 120.00354 * 154.68751 * 19 18 13 22 22 N 1.30826 * 120.00197 * 335.13687 * 21 19 18 23 23 Si 1.86801 * 120.00222 * 155.13013 * 21 19 18 24 24 H 1.48500 * 109.47360 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46781 * 300.00400 * 23 21 19 26 26 H 1.48498 * 109.47032 * 60.00112 * 23 21 19 27 27 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47059 * 299.99732 * 1 2 3 29 29 H 1.08999 * 109.47752 * 59.99466 * 1 2 3 30 30 H 1.08997 * 109.46757 * 60.00394 * 3 2 1 31 31 H 1.09001 * 109.47571 * 300.00496 * 3 2 1 32 32 H 1.09003 * 109.46991 * 293.56131 * 6 4 3 33 33 H 1.08995 * 109.47071 * 53.55975 * 6 4 3 34 34 H 1.09002 * 109.47423 * 304.62453 * 7 6 4 35 35 H 1.09003 * 109.47641 * 64.62650 * 7 6 4 36 36 H 0.96695 * 114.00792 * 179.97438 * 8 7 6 37 37 H 0.97003 * 120.00250 * 54.74931 * 9 4 3 38 38 H 1.08001 * 119.87687 * 0.02562 * 14 13 10 39 39 H 1.08001 * 119.74952 * 179.69474 * 15 14 13 40 40 H 1.08002 * 119.87587 * 180.02562 * 16 15 14 41 41 H 1.08009 * 120.12188 * 180.02562 * 17 16 15 42 42 H 0.96999 * 119.99614 * 355.73237 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7421 1.9400 -0.0006 5 1 4.1701 1.3952 0.8409 6 6 4.0870 3.4254 0.1251 7 6 5.6000 3.5858 0.2858 8 8 5.9118 4.9621 0.5110 9 7 4.2926 1.4152 -1.2527 10 16 5.4861 0.2677 -1.2159 11 8 6.4441 0.7156 -0.2667 12 8 5.8087 -0.0192 -2.5697 13 6 4.7764 -1.2017 -0.5513 14 6 5.2185 -1.6985 0.6537 15 6 4.6666 -2.8580 1.1756 16 6 3.6602 -3.5265 0.4954 17 6 3.1978 -3.0440 -0.7073 18 6 3.7512 -1.8681 -1.2473 19 6 3.2842 -1.3632 -2.4826 20 1 3.3829 -0.3116 -2.7082 21 6 2.6942 -2.2260 -3.4131 22 7 2.9871 -3.5009 -3.4005 23 14 1.4881 -1.5572 -4.6732 24 1 1.0083 -2.6662 -5.5364 25 1 0.3330 -0.9398 -3.9736 26 1 2.1640 -0.5341 -5.5109 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8030 2.2372 -0.8899 32 1 3.7591 3.9517 -0.7713 33 1 3.5828 3.8429 0.9965 34 1 5.9402 2.9927 1.1347 35 1 6.1000 3.2436 -0.6202 36 1 6.8560 5.1384 0.6226 37 1 3.9581 1.7399 -2.1034 38 1 6.0017 -1.1858 1.1923 39 1 5.0230 -3.2435 2.1195 40 1 3.2370 -4.4288 0.9116 41 1 2.4134 -3.5660 -1.2353 42 1 3.6591 -3.8381 -2.7876 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601355448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:21 Heat of formation + Delta-G solvation = -117.057266 kcal Electronic energy + Delta-G solvation = -27865.465366 eV Core-core repulsion = 24063.091962 eV Total energy + Delta-G solvation = -3802.373403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -37.78525 -37.69492 -36.25726 -35.85892 -34.88397 -34.01875 -30.70167 -30.07428 -29.37076 -29.07508 -28.27306 -25.29158 -23.23074 -21.72930 -21.17787 -20.96925 -18.89420 -18.24007 -17.31237 -16.94693 -16.24328 -16.00076 -15.47303 -14.91700 -14.79525 -14.41155 -14.14408 -14.09129 -13.78707 -13.62930 -13.54139 -13.22914 -13.10340 -12.79786 -12.42305 -12.13671 -12.11190 -11.66652 -11.57092 -11.24610 -11.20918 -11.17570 -11.10665 -11.07845 -10.99721 -10.70800 -10.49658 -10.45197 -9.84992 -9.74711 -9.56735 -9.32300 -9.13627 -8.86451 -8.08123 -7.70575 -7.40224 -6.86866 -4.66971 1.50047 2.09712 2.37405 2.78895 3.06938 3.08580 3.23437 3.27177 3.84552 3.90450 4.19930 4.42774 4.69378 4.93264 5.01393 5.23834 5.26192 5.28668 5.40959 5.44891 5.49098 5.58465 5.60842 5.77363 5.82988 5.92837 6.00405 6.01817 6.12858 6.15554 6.37189 6.43034 6.74207 7.02839 7.21913 7.40394 7.42834 7.54532 7.65795 7.66914 7.76520 7.92318 8.10677 8.48314 8.69694 9.85579 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.005828 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.154414 B = 4803.129238 C = 5099.323659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.169 6.169 3 C -0.120 4.120 4 C 0.184 3.816 5 H 0.097 0.903 6 C -0.122 4.122 7 C 0.076 3.924 8 O -0.581 6.581 9 N -1.114 6.114 10 S 2.695 3.305 11 O -1.000 7.000 12 O -0.967 6.967 13 C -0.778 4.778 14 C 0.015 3.985 15 C -0.264 4.264 16 C -0.056 4.056 17 C -0.204 4.204 18 C 0.190 3.810 19 C -0.468 4.468 20 H 0.085 0.915 21 C 0.043 3.957 22 N -0.777 5.777 23 Si 1.058 2.942 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.378 0.622 37 H 0.412 0.588 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 9.358 4.933 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.058 5.942 3 C -0.270 4.270 4 C 0.075 3.925 5 H 0.115 0.885 6 C -0.163 4.163 7 C -0.002 4.002 8 O -0.387 6.387 9 N -0.869 5.869 10 S 2.793 3.207 11 O -0.990 6.990 12 O -0.957 6.957 13 C -0.875 4.875 14 C -0.005 4.005 15 C -0.285 4.285 16 C -0.075 4.075 17 C -0.224 4.224 18 C 0.184 3.816 19 C -0.496 4.496 20 H 0.103 0.897 21 C -0.181 4.181 22 N -0.399 5.399 23 Si 0.881 3.119 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.225 0.775 37 H 0.246 0.754 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.713 8.145 3.509 9.615 hybrid contribution -0.112 0.893 1.397 1.662 sum -3.825 9.038 4.906 10.972 Atomic orbital electron populations 1.23432 0.98481 1.05928 1.03506 1.88720 1.02804 1.04961 1.97669 1.23895 0.99199 0.99239 1.04665 1.20153 0.91253 0.93837 0.87301 0.88496 1.21859 0.95528 0.95549 1.03365 1.22211 0.95632 0.81634 1.00728 1.86379 1.29897 1.26833 1.95599 1.55857 1.59556 1.58820 1.12635 1.01217 0.72619 0.73512 0.73324 1.93439 1.58960 1.81989 1.64619 1.93546 1.82594 1.84556 1.35044 1.29578 1.19850 1.25732 1.12344 1.20206 0.94310 0.93859 0.92076 1.20318 1.05452 1.00722 1.02010 1.20738 0.95289 0.96794 0.94662 1.21229 1.03351 1.00423 0.97371 1.16683 0.85356 0.89253 0.90320 1.20755 1.31237 0.98295 0.99273 0.89709 1.27010 0.97823 0.93465 0.99836 1.70466 1.23653 1.14999 1.30801 0.83733 0.75894 0.76776 0.75511 1.19736 1.19630 1.19522 0.88598 0.91787 0.91152 0.90000 0.89880 0.90675 0.90305 0.92524 0.93226 0.77509 0.75404 0.87848 0.89055 0.89209 0.87513 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.76 101.05 1.09 -0.87 16 2 S -0.17 -2.85 17.77 -107.50 -1.91 -4.76 16 3 C -0.12 -1.58 5.60 37.15 0.21 -1.37 16 4 C 0.18 2.61 2.26 -67.93 -0.15 2.46 16 5 H 0.10 1.49 7.70 -51.93 -0.40 1.09 16 6 C -0.12 -1.52 5.25 -26.73 -0.14 -1.66 16 7 C 0.08 1.04 6.13 37.15 0.23 1.27 16 8 O -0.58 -7.36 13.66 -35.23 -0.48 -7.84 16 9 N -1.11 -18.30 3.86 -4.89 -0.02 -18.32 16 10 S 2.69 56.17 4.83 -107.50 -0.52 55.65 16 11 O -1.00 -21.05 15.28 -57.17 -0.87 -21.92 16 12 O -0.97 -23.52 16.56 -57.17 -0.95 -24.47 16 13 C -0.78 -17.54 5.21 -38.87 -0.20 -17.75 16 14 C 0.02 0.34 9.53 -39.66 -0.38 -0.04 16 15 C -0.26 -5.60 10.05 -39.29 -0.39 -5.99 16 16 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 17 C -0.20 -4.72 7.81 -38.88 -0.30 -5.03 16 18 C 0.19 4.47 3.06 -106.83 -0.33 4.14 16 19 C -0.47 -11.03 6.69 -37.74 -0.25 -11.28 16 20 H 0.08 1.90 5.60 -52.48 -0.29 1.61 16 21 C 0.04 1.02 4.96 -17.34 -0.09 0.93 16 22 N -0.78 -19.32 12.35 55.55 0.69 -18.63 16 23 Si 1.06 20.24 30.00 -169.99 -5.10 15.14 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 26 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 27 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.73 7.46 -51.93 -0.39 0.35 16 36 H 0.38 3.20 9.12 45.56 0.42 3.62 16 37 H 0.41 6.12 8.60 -34.47 -0.30 5.83 16 38 H 0.10 2.10 7.33 -52.49 -0.38 1.72 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.55 6.42 -52.48 -0.34 2.21 16 42 H 0.30 7.79 6.52 -40.82 -0.27 7.52 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -29.98 362.94 -9.78 -39.76 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -4.97 Total: 16.70 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: -1.11 Total: -36.79 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.67 Total: -36.95 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -2.30 Total: -54.23 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.10 Total: 15.14 kcal Atomic # 16 Polarization: 53.32 SS G_CDS: -2.43 Total: 50.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.98 -9.78 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601355448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.293 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds