Wall clock time and date at job start Wed Apr 1 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 102.99824 * 2 1 4 4 C 1.52993 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47520 * 304.99958 * 4 3 2 6 6 C 1.53002 * 109.47481 * 185.00215 * 4 3 2 7 7 C 1.52991 * 109.47340 * 173.56315 * 6 4 3 8 8 O 1.42902 * 109.47317 * 184.62610 * 7 6 4 9 9 N 1.46497 * 109.47213 * 65.00010 * 4 3 2 10 10 S 1.65605 * 120.00206 * 234.74619 * 9 4 3 11 11 O 1.42097 * 106.39855 * 313.47682 * 10 9 4 12 12 O 1.42097 * 106.39886 * 180.55847 * 10 9 4 13 13 C 1.76197 * 107.21621 * 67.01821 * 10 9 4 14 14 C 1.37635 * 120.12787 * 244.74118 * 13 10 9 15 15 C 1.38611 * 120.24697 * 180.32174 * 14 13 10 16 16 C 1.38655 * 120.50376 * 359.67578 * 15 14 13 17 17 C 1.37594 * 120.24382 * 359.97438 * 16 15 14 18 18 C 1.40699 * 120.12800 * 64.43796 * 13 10 9 19 19 C 1.41394 * 120.24572 * 359.97438 * 18 13 10 20 20 H 1.08003 * 119.99955 * 334.69445 * 19 18 13 21 21 C 1.39940 * 120.00354 * 154.68751 * 19 18 13 22 22 N 1.30826 * 120.00197 * 335.13687 * 21 19 18 23 23 Si 1.86801 * 120.00222 * 155.13013 * 21 19 18 24 24 H 1.48500 * 109.47360 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46781 * 300.00400 * 23 21 19 26 26 H 1.48498 * 109.47032 * 60.00112 * 23 21 19 27 27 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47059 * 299.99732 * 1 2 3 29 29 H 1.08999 * 109.47752 * 59.99466 * 1 2 3 30 30 H 1.08997 * 109.46757 * 60.00394 * 3 2 1 31 31 H 1.09001 * 109.47571 * 300.00496 * 3 2 1 32 32 H 1.09003 * 109.46991 * 293.56131 * 6 4 3 33 33 H 1.08995 * 109.47071 * 53.55975 * 6 4 3 34 34 H 1.09002 * 109.47423 * 304.62453 * 7 6 4 35 35 H 1.09003 * 109.47641 * 64.62650 * 7 6 4 36 36 H 0.96695 * 114.00792 * 179.97438 * 8 7 6 37 37 H 0.97003 * 120.00250 * 54.74931 * 9 4 3 38 38 H 1.08001 * 119.87687 * 0.02562 * 14 13 10 39 39 H 1.08001 * 119.74952 * 179.69474 * 15 14 13 40 40 H 1.08002 * 119.87587 * 180.02562 * 16 15 14 41 41 H 1.08009 * 120.12188 * 180.02562 * 17 16 15 42 42 H 0.96999 * 119.99614 * 355.73237 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7421 1.9400 -0.0006 5 1 4.1701 1.3952 0.8409 6 6 4.0870 3.4254 0.1251 7 6 5.6000 3.5858 0.2858 8 8 5.9118 4.9621 0.5110 9 7 4.2926 1.4152 -1.2527 10 16 5.4861 0.2677 -1.2159 11 8 6.4441 0.7156 -0.2667 12 8 5.8087 -0.0192 -2.5697 13 6 4.7764 -1.2017 -0.5513 14 6 5.2185 -1.6985 0.6537 15 6 4.6666 -2.8580 1.1756 16 6 3.6602 -3.5265 0.4954 17 6 3.1978 -3.0440 -0.7073 18 6 3.7512 -1.8681 -1.2473 19 6 3.2842 -1.3632 -2.4826 20 1 3.3829 -0.3116 -2.7082 21 6 2.6942 -2.2260 -3.4131 22 7 2.9871 -3.5009 -3.4005 23 14 1.4881 -1.5572 -4.6732 24 1 1.0083 -2.6662 -5.5364 25 1 0.3330 -0.9398 -3.9736 26 1 2.1640 -0.5341 -5.5109 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8031 2.2371 0.8900 31 1 1.8030 2.2372 -0.8899 32 1 3.7591 3.9517 -0.7713 33 1 3.5828 3.8429 0.9965 34 1 5.9402 2.9927 1.1347 35 1 6.1000 3.2436 -0.6202 36 1 6.8560 5.1384 0.6226 37 1 3.9581 1.7399 -2.1034 38 1 6.0017 -1.1858 1.1923 39 1 5.0230 -3.2435 2.1195 40 1 3.2370 -4.4288 0.9116 41 1 2.4134 -3.5660 -1.2353 42 1 3.6591 -3.8381 -2.7876 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601355448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:20 Heat of formation + Delta-G solvation = -138.722033 kcal Electronic energy + Delta-G solvation = -27866.404820 eV Core-core repulsion = 24063.091962 eV Total energy + Delta-G solvation = -3803.312858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.46843 -38.87286 -37.93508 -36.97078 -36.64560 -35.75519 -32.04049 -31.70657 -31.06495 -30.15372 -29.34059 -27.04558 -24.31204 -23.44055 -22.83851 -22.16943 -20.46149 -19.95606 -18.56059 -18.33019 -17.68783 -17.48421 -16.74454 -16.50568 -16.37478 -15.71352 -15.64613 -15.34718 -15.14575 -14.98783 -14.83590 -14.68934 -14.20763 -14.10717 -13.94598 -13.80541 -13.25606 -13.11545 -12.98888 -12.90451 -12.80814 -12.73621 -12.65859 -12.47196 -12.29344 -12.11975 -11.98016 -11.84211 -11.46093 -11.15962 -10.89843 -10.86322 -10.45212 -10.32639 -9.80209 -9.39292 -9.19434 -8.16415 -6.45405 -0.12697 0.61304 0.93311 1.15982 1.52922 1.69920 1.78766 1.97475 2.34386 2.34881 2.70817 3.04303 3.21996 3.52550 3.84362 3.87030 4.02796 4.19312 4.27677 4.31453 4.37170 4.44775 4.44949 4.45382 4.53496 4.73087 4.75450 4.80365 4.83670 4.97264 4.97745 5.14178 5.25938 5.32303 5.45344 5.66696 5.76016 5.83842 6.01457 6.16129 6.23734 6.36218 6.73737 6.85009 6.96038 8.02882 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.005828 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.154414 B = 4803.129238 C = 5099.323659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.259 6.259 3 C -0.099 4.099 4 C 0.182 3.818 5 H 0.084 0.916 6 C -0.114 4.114 7 C 0.075 3.925 8 O -0.587 6.587 9 N -1.102 6.102 10 S 2.713 3.287 11 O -1.004 7.004 12 O -1.006 7.006 13 C -0.790 4.790 14 C 0.003 3.997 15 C -0.265 4.265 16 C -0.059 4.059 17 C -0.219 4.219 18 C 0.188 3.812 19 C -0.487 4.487 20 H 0.090 0.910 21 C 0.009 3.991 22 N -0.806 5.806 23 Si 1.096 2.904 24 H -0.277 1.277 25 H -0.248 1.248 26 H -0.260 1.260 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.034 0.966 36 H 0.395 0.605 37 H 0.421 0.579 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 11.579 5.833 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.032 6.032 3 C -0.249 4.249 4 C 0.073 3.927 5 H 0.102 0.898 6 C -0.155 4.155 7 C -0.004 4.004 8 O -0.395 6.395 9 N -0.861 5.861 10 S 2.810 3.190 11 O -0.995 6.995 12 O -0.997 6.997 13 C -0.885 4.885 14 C -0.017 4.017 15 C -0.285 4.285 16 C -0.077 4.077 17 C -0.239 4.239 18 C 0.182 3.818 19 C -0.515 4.515 20 H 0.108 0.892 21 C -0.209 4.209 22 N -0.428 5.428 23 Si 0.913 3.087 24 H -0.202 1.202 25 H -0.172 1.172 26 H -0.184 1.184 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.245 0.755 37 H 0.257 0.743 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.110 0.890 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.915 10.361 4.432 12.294 hybrid contribution 0.339 0.288 1.290 1.364 sum -4.576 10.649 5.722 12.926 Atomic orbital electron populations 1.23367 0.95025 1.05911 1.05129 1.88996 1.06826 1.09429 1.97963 1.23850 0.98110 0.96065 1.06855 1.20345 0.92006 0.94792 0.85521 0.89803 1.21803 0.94788 0.93959 1.04958 1.22149 0.96503 0.82102 0.99600 1.86338 1.31768 1.25935 1.95484 1.55438 1.59005 1.57435 1.14178 1.00511 0.72918 0.73419 0.72121 1.93425 1.59630 1.81907 1.64497 1.93491 1.83688 1.85384 1.37105 1.29872 1.19338 1.26876 1.12379 1.20469 0.94747 0.94319 0.92170 1.20646 1.04833 1.00224 1.02800 1.21022 0.95173 0.97443 0.94098 1.21192 1.03671 1.00944 0.98115 1.16799 0.85293 0.89243 0.90512 1.20859 1.32411 0.98541 0.99641 0.89248 1.28225 0.98468 0.93140 1.01117 1.70578 1.24611 1.16042 1.31586 0.83303 0.75033 0.76455 0.73876 1.20230 1.17168 1.18418 0.89478 0.89462 0.90138 0.87142 0.88191 0.89383 0.88172 0.93432 0.94806 0.75542 0.74297 0.86673 0.86500 0.87041 0.89023 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 10.76 113.37 1.22 -1.90 16 2 S -0.26 -8.37 17.77 -56.49 -1.00 -9.38 16 3 C -0.10 -2.30 5.60 71.98 0.40 -1.90 16 4 C 0.18 4.76 2.26 44.99 0.10 4.86 16 5 H 0.08 2.46 7.70 -2.38 -0.02 2.44 16 6 C -0.11 -2.49 5.25 30.59 0.16 -2.33 16 7 C 0.07 1.90 6.13 71.98 0.44 2.34 16 8 O -0.59 -13.44 13.66 -148.98 -2.03 -15.47 16 9 N -1.10 -34.88 3.86 -169.39 -0.65 -35.54 16 10 S 2.71 112.90 4.83 -56.49 -0.27 112.63 16 11 O -1.00 -41.94 15.28 -128.00 -1.96 -43.90 16 12 O -1.01 -49.61 16.56 -128.00 -2.12 -51.73 16 13 C -0.79 -35.75 5.21 22.73 0.12 -35.63 16 14 C 0.00 0.12 9.53 22.22 0.21 0.33 16 15 C -0.26 -10.97 10.05 22.46 0.23 -10.75 16 16 C -0.06 -2.52 10.02 22.22 0.22 -2.29 16 17 C -0.22 -10.38 7.81 22.73 0.18 -10.20 16 18 C 0.19 8.94 3.06 -21.29 -0.07 8.88 16 19 C -0.49 -23.23 6.69 23.46 0.16 -23.07 16 20 H 0.09 4.04 5.60 -2.91 -0.02 4.02 16 21 C 0.01 0.43 4.96 85.26 0.42 0.86 16 22 N -0.81 -41.43 12.35 21.83 0.27 -41.16 16 23 Si 1.10 40.46 30.00 68.60 2.06 42.51 16 24 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 26 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.03 0.96 7.46 -2.39 -0.02 0.94 16 36 H 0.40 5.87 9.12 -74.06 -0.68 5.20 16 37 H 0.42 11.93 8.60 -96.74 -0.83 11.10 16 38 H 0.12 4.60 7.33 -2.91 -0.02 4.58 16 39 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.09 4.56 6.42 -2.91 -0.02 4.54 16 42 H 0.29 15.44 6.52 -92.71 -0.60 14.84 16 Total: -1.00 -65.60 362.94 -2.20 -67.80 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.29 Total: 45.05 kcal Atomic # 6 Polarization: -74.60 SS G_CDS: 3.80 Total: -70.80 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -0.38 Total: -76.70 kcal Atomic # 8 Polarization: -105.00 SS G_CDS: -6.11 Total: -111.11 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.06 Total: 42.51 kcal Atomic # 16 Polarization: 104.53 SS G_CDS: -1.28 Total: 103.25 kcal Total: -65.60 -2.20 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601355448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.924 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds