Wall clock time and date at job start Wed Apr 1 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 103.00193 * 2 1 4 4 H 1.08993 * 109.47355 * 55.00268 * 3 2 1 5 5 C 1.53004 * 109.46959 * 295.00336 * 3 2 1 6 6 O 1.42906 * 109.46814 * 294.99804 * 5 3 2 7 7 C 1.53005 * 109.47127 * 175.00479 * 3 2 1 8 8 H 1.08993 * 109.47175 * 59.99679 * 7 3 2 9 9 C 1.52996 * 109.46710 * 299.99997 * 7 3 2 10 10 N 1.46497 * 109.46881 * 180.02562 * 7 3 2 11 11 S 1.65604 * 119.99818 * 215.62301 * 10 7 3 12 12 O 1.42100 * 106.40089 * 178.66285 * 11 10 7 13 13 O 1.42100 * 106.40123 * 311.58533 * 11 10 7 14 14 C 1.76208 * 107.21502 * 65.12366 * 11 10 7 15 15 C 1.37632 * 120.12385 * 248.17602 * 14 11 10 16 16 C 1.38616 * 120.24435 * 180.02562 * 15 14 11 17 17 C 1.38654 * 120.50274 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.24842 * 0.02562 * 17 16 15 19 19 C 1.40690 * 120.12721 * 67.90686 * 14 11 10 20 20 C 1.41401 * 120.24515 * 359.97438 * 19 14 11 21 21 H 1.07994 * 120.00011 * 331.72317 * 20 19 14 22 22 C 1.39949 * 119.99819 * 151.73084 * 20 19 14 23 23 N 1.30822 * 120.00210 * 348.52412 * 22 20 19 24 24 Si 1.86799 * 119.99553 * 168.52537 * 22 20 19 25 25 H 1.48507 * 109.47218 * 89.99965 * 24 22 20 26 26 H 1.48508 * 109.47137 * 209.99435 * 24 22 20 27 27 H 1.48497 * 109.47467 * 329.99525 * 24 22 20 28 28 H 1.08997 * 109.46944 * 300.00159 * 1 2 3 29 29 H 1.09004 * 109.47172 * 59.99307 * 1 2 3 30 30 H 1.08991 * 109.47567 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47649 * 54.99848 * 5 3 2 32 32 H 1.09007 * 109.47036 * 175.00446 * 5 3 2 33 33 H 0.96705 * 113.99211 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47021 * 299.99870 * 9 7 3 35 35 H 1.08993 * 109.47690 * 60.00085 * 9 7 3 36 36 H 1.09006 * 109.46999 * 180.02562 * 9 7 3 37 37 H 0.96998 * 120.00489 * 35.62875 * 10 7 3 38 38 H 1.07999 * 119.88207 * 0.02562 * 15 14 11 39 39 H 1.08002 * 119.74812 * 179.97438 * 16 15 14 40 40 H 1.07998 * 119.87668 * 179.97438 * 17 16 15 41 41 H 1.07995 * 120.12538 * 179.97438 * 18 17 16 42 42 H 0.96995 * 119.99963 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 8 2.4729 1.8449 -2.4025 7 6 3.7371 1.9411 0.1256 8 1 4.2296 1.4545 -0.7162 9 6 4.2163 1.3070 1.4329 10 7 4.0666 3.3685 0.1262 11 16 5.4553 3.8981 -0.6043 12 8 5.4701 5.3117 -0.4609 13 8 6.5009 3.0582 -0.1348 14 6 5.2934 3.5745 -2.3288 15 6 6.0868 2.6246 -2.9308 16 6 5.9620 2.3683 -4.2874 17 6 5.0382 3.0636 -5.0528 18 6 4.2346 4.0176 -4.4720 19 6 4.3487 4.2821 -3.0945 20 6 3.5238 5.2558 -2.4855 21 1 3.2656 5.1677 -1.4406 22 6 3.0420 6.3336 -3.2370 23 7 3.5265 6.5683 -4.4293 24 14 1.7070 7.4372 -2.5374 25 1 2.3323 8.5584 -1.7910 26 1 0.8819 7.9800 -3.6464 27 1 0.8454 6.6505 -1.6187 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.6797 2.2010 -1.4402 32 1 1.9076 3.4785 -1.2707 33 1 2.2210 2.2021 -3.2651 34 1 3.7238 1.7937 2.2747 35 1 3.9711 0.2450 1.4330 36 1 5.2956 1.4311 1.5226 37 1 3.4714 4.0035 0.5545 38 1 6.8094 2.0767 -2.3442 39 1 6.5890 1.6215 -4.7516 40 1 4.9497 2.8561 -6.1089 41 1 3.5161 4.5582 -5.0702 42 1 3.1928 7.3156 -4.9499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601379332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:39 Heat of formation + Delta-G solvation = -108.357164 kcal Electronic energy + Delta-G solvation = -28141.706884 eV Core-core repulsion = 24339.710746 eV Total energy + Delta-G solvation = -3801.996139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -37.82753 -37.40395 -36.20250 -35.22904 -34.80483 -33.88268 -30.68882 -30.19411 -29.51630 -29.34688 -28.21602 -25.53777 -23.19242 -21.63197 -21.19051 -20.85912 -18.85409 -17.73088 -17.19372 -16.88627 -16.25443 -15.84212 -15.59168 -15.31846 -14.70195 -14.37709 -14.28419 -14.18848 -13.56639 -13.31799 -13.21192 -13.16006 -12.93196 -12.75847 -12.41205 -12.15137 -11.94889 -11.86507 -11.50224 -11.30670 -11.26002 -11.15605 -11.10659 -11.02720 -11.00782 -10.69578 -10.58716 -10.49809 -9.88702 -9.82898 -9.51030 -9.44156 -9.30195 -8.81581 -7.97130 -7.54708 -7.48940 -7.02931 -4.75539 1.45045 1.79906 2.39242 2.62896 2.74547 2.92191 2.93074 3.11481 3.72773 3.98664 4.41526 4.50057 4.73587 4.78699 5.01657 5.06962 5.11368 5.31485 5.42911 5.54132 5.57185 5.71787 5.73509 5.82664 5.89153 6.01570 6.09954 6.13360 6.28098 6.44265 6.51184 6.54050 6.78101 6.98580 7.12160 7.33690 7.50185 7.54961 7.69732 7.85560 7.91878 8.14908 8.30854 8.51226 8.68501 9.89435 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010063 B = 0.005973 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.782041 B = 4686.261365 C = 5274.663454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.228 6.228 3 C -0.060 4.060 4 H 0.097 0.903 5 C 0.079 3.921 6 O -0.542 6.542 7 C 0.185 3.815 8 H 0.104 0.896 9 C -0.173 4.173 10 N -1.114 6.114 11 S 2.695 3.305 12 O -0.966 6.966 13 O -0.996 6.996 14 C -0.757 4.757 15 C 0.002 3.998 16 C -0.244 4.244 17 C -0.072 4.072 18 C -0.163 4.163 19 C 0.200 3.800 20 C -0.450 4.450 21 H 0.083 0.917 22 C 0.082 3.918 23 N -0.779 5.779 24 Si 0.909 3.091 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.259 1.259 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.380 0.620 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -6.786 5.344 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.002 6.002 3 C -0.190 4.190 4 H 0.115 0.885 5 C -0.001 4.001 6 O -0.347 6.347 7 C 0.077 3.923 8 H 0.122 0.878 9 C -0.232 4.232 10 N -0.870 5.870 11 S 2.794 3.206 12 O -0.956 6.956 13 O -0.986 6.986 14 C -0.853 4.853 15 C -0.018 4.018 16 C -0.264 4.264 17 C -0.091 4.091 18 C -0.182 4.182 19 C 0.196 3.804 20 C -0.479 4.479 21 H 0.101 0.899 22 C -0.138 4.138 23 N -0.402 5.402 24 Si 0.733 3.267 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.183 1.183 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.227 0.773 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.240 0.760 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.538 -7.566 6.038 11.681 hybrid contribution -2.398 2.019 -0.790 3.233 sum -8.937 -5.547 5.248 11.755 Atomic orbital electron populations 1.23423 0.95694 1.06055 1.04601 1.86782 1.05630 1.10113 1.97702 1.23662 1.00674 0.94575 1.00085 0.88521 1.22164 0.93200 0.98121 0.86657 1.86500 1.64364 1.67036 1.16793 1.20194 0.91568 0.81091 0.99494 0.87774 1.22430 1.02775 1.01131 0.96887 1.55865 1.44251 1.13538 1.73306 1.01257 0.71873 0.72792 0.74719 1.93550 1.85709 1.29215 1.87149 1.93452 1.54146 1.69731 1.81318 1.29761 1.14669 1.18857 1.22024 1.20209 0.94163 0.92711 0.94718 1.20448 1.05500 1.06089 0.94382 1.20869 0.95414 0.95486 0.97321 1.21456 1.02143 0.98815 0.95829 1.16851 0.85561 0.86485 0.91541 1.19738 1.25541 1.05117 0.97471 0.89948 1.25881 0.95995 0.97795 0.94173 1.69779 1.34683 1.25677 1.10111 0.86278 0.80213 0.80601 0.79658 1.18733 1.19929 1.18264 0.90947 0.90601 0.88391 0.94931 0.91014 0.77305 0.92502 0.90890 0.90915 0.75983 0.87744 0.89013 0.89131 0.85889 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 10.45 101.05 1.06 -0.17 16 2 S -0.23 -2.94 20.10 -107.50 -2.16 -5.10 16 3 C -0.06 -0.80 2.34 -26.73 -0.06 -0.86 16 4 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.08 1.12 6.35 37.16 0.24 1.36 16 6 O -0.54 -8.81 12.19 -35.23 -0.43 -9.24 16 7 C 0.19 2.88 2.16 -67.93 -0.15 2.73 16 8 H 0.10 1.87 7.28 -51.93 -0.38 1.49 16 9 C -0.17 -2.43 9.28 37.16 0.34 -2.09 16 10 N -1.11 -18.78 4.11 -4.89 -0.02 -18.80 16 11 S 2.70 57.90 4.89 -107.50 -0.53 57.38 16 12 O -0.97 -23.63 16.31 -57.17 -0.93 -24.57 16 13 O -1.00 -22.62 16.29 -57.17 -0.93 -23.55 16 14 C -0.76 -17.29 5.82 -38.88 -0.23 -17.52 16 15 C 0.00 0.04 9.53 -39.66 -0.38 -0.34 16 16 C -0.24 -5.19 10.05 -39.29 -0.39 -5.59 16 17 C -0.07 -1.53 10.02 -39.66 -0.40 -1.93 16 18 C -0.16 -3.70 8.67 -38.87 -0.34 -4.04 16 19 C 0.20 4.67 5.21 -106.82 -0.56 4.12 16 20 C -0.45 -10.39 6.93 -37.74 -0.26 -10.65 16 21 H 0.08 1.79 5.26 -52.49 -0.28 1.52 16 22 C 0.08 1.86 5.25 -17.34 -0.09 1.77 16 23 N -0.78 -18.29 10.83 55.55 0.60 -17.69 16 24 Si 0.91 17.13 29.57 -169.99 -5.03 12.10 16 25 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 26 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 27 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.72 7.02 -51.92 -0.36 0.36 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.41 6.72 -51.93 -0.35 0.06 16 32 H 0.07 1.11 6.40 -51.93 -0.33 0.78 16 33 H 0.38 5.79 9.12 45.56 0.42 6.21 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.96 6.91 -51.93 -0.36 0.60 16 36 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 37 H 0.41 5.96 8.70 -34.47 -0.30 5.66 16 38 H 0.10 2.21 7.33 -52.49 -0.38 1.83 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 2.84 6.19 -52.49 -0.32 2.52 16 42 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -29.21 363.28 -9.89 -39.10 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -4.72 Total: 18.10 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: -1.22 Total: -33.21 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.58 Total: -36.49 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -2.29 Total: -57.36 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: 54.97 SS G_CDS: -2.69 Total: 52.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.21 -9.89 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601379332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.261 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds