Wall clock time and date at job start Wed Apr 1 2020 02:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 103.00193 * 2 1 4 4 H 1.08993 * 109.47355 * 55.00268 * 3 2 1 5 5 C 1.53004 * 109.46959 * 295.00336 * 3 2 1 6 6 O 1.42906 * 109.46814 * 294.99804 * 5 3 2 7 7 C 1.53005 * 109.47127 * 175.00479 * 3 2 1 8 8 H 1.08993 * 109.47175 * 59.99679 * 7 3 2 9 9 C 1.52996 * 109.46710 * 299.99997 * 7 3 2 10 10 N 1.46497 * 109.46881 * 180.02562 * 7 3 2 11 11 S 1.65604 * 119.99818 * 215.62301 * 10 7 3 12 12 O 1.42100 * 106.40089 * 178.66285 * 11 10 7 13 13 O 1.42100 * 106.40123 * 311.58533 * 11 10 7 14 14 C 1.76208 * 107.21502 * 65.12366 * 11 10 7 15 15 C 1.37632 * 120.12385 * 248.17602 * 14 11 10 16 16 C 1.38616 * 120.24435 * 180.02562 * 15 14 11 17 17 C 1.38654 * 120.50274 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.24842 * 0.02562 * 17 16 15 19 19 C 1.40690 * 120.12721 * 67.90686 * 14 11 10 20 20 C 1.41401 * 120.24515 * 359.97438 * 19 14 11 21 21 H 1.07994 * 120.00011 * 331.72317 * 20 19 14 22 22 C 1.39949 * 119.99819 * 151.73084 * 20 19 14 23 23 N 1.30822 * 120.00210 * 348.52412 * 22 20 19 24 24 Si 1.86799 * 119.99553 * 168.52537 * 22 20 19 25 25 H 1.48507 * 109.47218 * 89.99965 * 24 22 20 26 26 H 1.48508 * 109.47137 * 209.99435 * 24 22 20 27 27 H 1.48497 * 109.47467 * 329.99525 * 24 22 20 28 28 H 1.08997 * 109.46944 * 300.00159 * 1 2 3 29 29 H 1.09004 * 109.47172 * 59.99307 * 1 2 3 30 30 H 1.08991 * 109.47567 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47649 * 54.99848 * 5 3 2 32 32 H 1.09007 * 109.47036 * 175.00446 * 5 3 2 33 33 H 0.96705 * 113.99211 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47021 * 299.99870 * 9 7 3 35 35 H 1.08993 * 109.47690 * 60.00085 * 9 7 3 36 36 H 1.09006 * 109.46999 * 180.02562 * 9 7 3 37 37 H 0.96998 * 120.00489 * 35.62875 * 10 7 3 38 38 H 1.07999 * 119.88207 * 0.02562 * 15 14 11 39 39 H 1.08002 * 119.74812 * 179.97438 * 16 15 14 40 40 H 1.07998 * 119.87668 * 179.97438 * 17 16 15 41 41 H 1.07995 * 120.12538 * 179.97438 * 18 17 16 42 42 H 0.96995 * 119.99963 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 8 2.4729 1.8449 -2.4025 7 6 3.7371 1.9411 0.1256 8 1 4.2296 1.4545 -0.7162 9 6 4.2163 1.3070 1.4329 10 7 4.0666 3.3685 0.1262 11 16 5.4553 3.8981 -0.6043 12 8 5.4701 5.3117 -0.4609 13 8 6.5009 3.0582 -0.1348 14 6 5.2934 3.5745 -2.3288 15 6 6.0868 2.6246 -2.9308 16 6 5.9620 2.3683 -4.2874 17 6 5.0382 3.0636 -5.0528 18 6 4.2346 4.0176 -4.4720 19 6 4.3487 4.2821 -3.0945 20 6 3.5238 5.2558 -2.4855 21 1 3.2656 5.1677 -1.4406 22 6 3.0420 6.3336 -3.2370 23 7 3.5265 6.5683 -4.4293 24 14 1.7070 7.4372 -2.5374 25 1 2.3323 8.5584 -1.7910 26 1 0.8819 7.9800 -3.6464 27 1 0.8454 6.6505 -1.6187 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.6797 2.2010 -1.4402 32 1 1.9076 3.4785 -1.2707 33 1 2.2210 2.2021 -3.2651 34 1 3.7238 1.7937 2.2747 35 1 3.9711 0.2450 1.4330 36 1 5.2956 1.4311 1.5226 37 1 3.4714 4.0035 0.5545 38 1 6.8094 2.0767 -2.3442 39 1 6.5890 1.6215 -4.7516 40 1 4.9497 2.8561 -6.1089 41 1 3.5161 4.5582 -5.0702 42 1 3.1928 7.3156 -4.9499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601379332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:38 Heat of formation + Delta-G solvation = -129.033721 kcal Electronic energy + Delta-G solvation = -28142.603487 eV Core-core repulsion = 24339.710746 eV Total energy + Delta-G solvation = -3802.892741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.36565 -38.81377 -37.97649 -36.63887 -36.48785 -35.58992 -32.05356 -31.81504 -31.22861 -30.37195 -29.14247 -27.26510 -24.35087 -23.34760 -22.86203 -22.13076 -20.42978 -19.43991 -18.68917 -18.23494 -17.83026 -17.30424 -16.90611 -16.80633 -15.98435 -15.94295 -15.73570 -15.38911 -15.00317 -14.86351 -14.43041 -14.40374 -14.26874 -13.98029 -13.58327 -13.50253 -13.32358 -13.18561 -13.08849 -12.94840 -12.86532 -12.79498 -12.73822 -12.58094 -12.39604 -12.20240 -12.10563 -11.84557 -11.57598 -11.13626 -11.08808 -10.84187 -10.48286 -10.27878 -9.69991 -9.29427 -8.71591 -8.47219 -6.51063 -0.15102 0.66444 0.76391 1.08051 1.38764 1.49374 1.54890 1.72752 2.17544 2.42889 2.71992 3.04058 3.40667 3.60118 3.61946 3.90807 3.93098 4.23334 4.36804 4.40255 4.42201 4.47581 4.55071 4.59769 4.61386 4.74144 4.79818 4.84897 4.97013 4.99123 5.07471 5.25436 5.29389 5.37464 5.41839 5.62685 5.82189 5.92946 6.12440 6.19067 6.24265 6.58331 6.78020 6.95660 6.96652 8.23373 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010063 B = 0.005973 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.782041 B = 4686.261365 C = 5274.663454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.263 6.263 3 C -0.053 4.053 4 H 0.122 0.878 5 C 0.076 3.924 6 O -0.558 6.558 7 C 0.184 3.816 8 H 0.077 0.923 9 C -0.169 4.169 10 N -1.100 6.100 11 S 2.712 3.288 12 O -0.999 6.999 13 O -1.013 7.013 14 C -0.772 4.772 15 C -0.014 4.014 16 C -0.247 4.247 17 C -0.073 4.073 18 C -0.176 4.176 19 C 0.189 3.811 20 C -0.467 4.467 21 H 0.089 0.911 22 C 0.044 3.956 23 N -0.810 5.810 24 Si 0.965 3.035 25 H -0.274 1.274 26 H -0.264 1.264 27 H -0.239 1.239 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.380 0.620 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.420 0.580 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 -7.340 6.181 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.038 6.038 3 C -0.183 4.183 4 H 0.140 0.860 5 C -0.004 4.004 6 O -0.363 6.363 7 C 0.076 3.924 8 H 0.095 0.905 9 C -0.228 4.228 10 N -0.859 5.859 11 S 2.809 3.191 12 O -0.990 6.990 13 O -1.003 7.003 14 C -0.867 4.867 15 C -0.034 4.034 16 C -0.267 4.267 17 C -0.091 4.091 18 C -0.196 4.196 19 C 0.184 3.816 20 C -0.496 4.496 21 H 0.107 0.893 22 C -0.174 4.174 23 N -0.435 5.435 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.188 1.188 27 H -0.162 1.162 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.227 0.773 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.255 0.745 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.606 -8.134 6.868 13.690 hybrid contribution -1.741 2.088 -1.067 2.920 sum -10.348 -6.046 5.801 13.315 Atomic orbital electron populations 1.23490 0.92233 1.07334 1.05551 1.86927 1.09426 1.09630 1.97790 1.23581 0.98907 0.95280 1.00484 0.85989 1.22271 0.94278 0.97327 0.86489 1.86495 1.65178 1.67306 1.17314 1.20249 0.93260 0.79621 0.99311 0.90508 1.22383 1.01705 1.01902 0.96771 1.55399 1.43327 1.14650 1.72553 1.00561 0.72424 0.71777 0.74317 1.93498 1.86597 1.31384 1.87510 1.93424 1.55614 1.69834 1.81421 1.29943 1.14823 1.19003 1.22947 1.20428 0.94476 0.93036 0.95493 1.20757 1.05544 1.06313 0.94090 1.21145 0.94688 0.94677 0.98624 1.21485 1.02740 0.99528 0.95873 1.17027 0.85841 0.86795 0.91925 1.19973 1.26059 1.05523 0.98006 0.89297 1.26657 0.97564 0.98815 0.94346 1.69825 1.35841 1.26572 1.11239 0.85441 0.78034 0.78531 0.79467 1.19986 1.18846 1.16165 0.89187 0.90398 0.86963 0.92764 0.92364 0.77309 0.90259 0.89925 0.92778 0.74469 0.87341 0.86637 0.86628 0.86618 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 10.45 113.37 1.18 -0.67 16 2 S -0.26 -6.24 20.10 -56.49 -1.14 -7.38 16 3 C -0.05 -1.30 2.34 30.60 0.07 -1.23 16 4 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 5 C 0.08 2.06 6.35 71.98 0.46 2.52 16 6 O -0.56 -17.98 12.19 -148.98 -1.82 -19.79 16 7 C 0.18 5.56 2.16 44.99 0.10 5.65 16 8 H 0.08 2.78 7.28 -2.39 -0.02 2.77 16 9 C -0.17 -4.52 9.28 71.98 0.67 -3.86 16 10 N -1.10 -36.46 4.11 -169.40 -0.70 -37.16 16 11 S 2.71 117.76 4.89 -56.49 -0.28 117.49 16 12 O -1.00 -49.56 16.31 -128.00 -2.09 -51.65 16 13 O -1.01 -46.62 16.29 -128.00 -2.09 -48.71 16 14 C -0.77 -35.74 5.82 22.73 0.13 -35.61 16 15 C -0.01 -0.65 9.53 22.22 0.21 -0.44 16 16 C -0.25 -10.38 10.05 22.46 0.23 -10.15 16 17 C -0.07 -3.06 10.02 22.22 0.22 -2.83 16 18 C -0.18 -8.10 8.67 22.73 0.20 -7.91 16 19 C 0.19 8.90 5.21 -21.29 -0.11 8.79 16 20 C -0.47 -21.65 6.93 23.46 0.16 -21.49 16 21 H 0.09 3.86 5.26 -2.91 -0.02 3.85 16 22 C 0.04 1.98 5.25 85.26 0.45 2.43 16 23 N -0.81 -38.34 10.83 21.83 0.24 -38.11 16 24 Si 0.96 34.29 29.57 68.60 2.03 36.32 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 27 H -0.24 -7.64 7.11 99.48 0.71 -6.93 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.23 7.02 -2.39 -0.02 1.21 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.22 6.72 -2.39 -0.02 1.21 16 32 H 0.06 1.74 6.40 -2.38 -0.02 1.72 16 33 H 0.38 11.73 9.12 -74.05 -0.68 11.05 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.06 6.91 -2.39 -0.02 2.05 16 36 H 0.05 1.65 7.71 -2.38 -0.02 1.63 16 37 H 0.42 11.80 8.70 -96.75 -0.84 10.96 16 38 H 0.11 4.67 7.33 -2.91 -0.02 4.65 16 39 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.12 5.44 6.19 -2.91 -0.02 5.42 16 42 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 Total: -1.00 -62.79 363.28 -2.31 -65.10 By element: Atomic # 1 Polarization: 49.14 SS G_CDS: -0.44 Total: 48.69 kcal Atomic # 6 Polarization: -68.77 SS G_CDS: 3.97 Total: -64.80 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -0.46 Total: -75.26 kcal Atomic # 8 Polarization: -114.16 SS G_CDS: -5.99 Total: -120.15 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Atomic # 16 Polarization: 111.52 SS G_CDS: -1.41 Total: 110.11 kcal Total: -62.79 -2.31 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601379332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.936 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds