Wall clock time and date at job start Wed Apr 1 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81404 * 102.99826 * 2 1 4 4 H 1.09003 * 109.47009 * 305.00039 * 3 2 1 5 5 C 1.53001 * 109.47071 * 64.99709 * 3 2 1 6 6 O 1.42899 * 109.46885 * 65.00384 * 5 3 2 7 7 C 1.52998 * 109.47030 * 185.00184 * 3 2 1 8 8 H 1.09001 * 109.47097 * 179.97438 * 7 3 2 9 9 C 1.52997 * 109.47254 * 59.99746 * 7 3 2 10 10 N 1.46503 * 109.47024 * 299.99566 * 7 3 2 11 11 S 1.65593 * 120.00379 * 211.95634 * 10 7 3 12 12 O 1.42100 * 106.40192 * 309.54946 * 11 10 7 13 13 O 1.42102 * 106.40473 * 176.63016 * 11 10 7 14 14 C 1.76203 * 107.21710 * 63.08710 * 11 10 7 15 15 C 1.37633 * 120.13175 * 253.79977 * 14 11 10 16 16 C 1.38612 * 120.25083 * 179.97438 * 15 14 11 17 17 C 1.38657 * 120.50134 * 359.97438 * 16 15 14 18 18 C 1.37592 * 120.24792 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12510 * 73.79742 * 14 11 10 20 20 C 1.41400 * 120.24610 * 0.04868 * 19 14 11 21 21 H 1.07995 * 119.99352 * 322.96773 * 20 19 14 22 22 C 1.39945 * 119.99959 * 142.96535 * 20 19 14 23 23 N 1.30825 * 120.00157 * 356.73431 * 22 20 19 24 24 Si 1.86794 * 119.99757 * 176.73138 * 22 20 19 25 25 H 1.48502 * 109.47397 * 89.99961 * 24 22 20 26 26 H 1.48502 * 109.47511 * 210.00028 * 24 22 20 27 27 H 1.48506 * 109.47370 * 330.00070 * 24 22 20 28 28 H 1.08998 * 109.47670 * 300.00096 * 1 2 3 29 29 H 1.09001 * 109.47061 * 60.00595 * 1 2 3 30 30 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46764 * 185.00059 * 5 3 2 32 32 H 1.08994 * 109.47052 * 304.99776 * 5 3 2 33 33 H 0.96700 * 113.99943 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47278 * 60.00484 * 9 7 3 35 35 H 1.09007 * 109.46965 * 179.97438 * 9 7 3 36 36 H 1.09001 * 109.47102 * 300.00039 * 9 7 3 37 37 H 0.96999 * 119.99727 * 31.95817 * 10 7 3 38 38 H 1.08004 * 119.87331 * 0.25646 * 15 14 11 39 39 H 1.08002 * 119.74689 * 179.97438 * 16 15 14 40 40 H 1.07994 * 119.87196 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.12953 * 180.02562 * 18 17 16 42 42 H 0.97001 * 119.99899 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7426 2.4016 1.3073 6 8 2.4729 1.8451 2.4024 7 6 3.7369 1.9413 -0.1258 8 1 3.9820 3.0033 -0.1262 9 6 4.2162 1.3072 -1.4331 10 7 4.3990 1.2873 1.0057 11 16 5.8155 1.9017 1.6041 12 8 6.6781 2.0802 0.4890 13 8 6.1554 1.1036 2.7296 14 6 5.4643 3.5131 2.2244 15 6 5.8836 4.6264 1.5323 16 6 5.6082 5.8952 2.0178 17 6 4.9081 6.0584 3.2035 18 6 4.4791 4.9597 3.9120 19 6 4.7540 3.6666 3.4292 20 6 4.3190 2.5301 4.1493 21 1 3.9703 1.6561 3.6194 22 6 4.3404 2.5380 5.5486 23 7 4.8223 3.5717 6.1896 24 14 3.6808 1.0727 6.5010 25 1 4.7786 0.1010 6.7372 26 1 3.1382 1.5330 7.8044 27 1 2.6011 0.4191 5.7185 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9074 3.4785 1.2706 32 1 0.6796 2.2010 1.4400 33 1 2.2210 2.2022 3.2650 34 1 3.7236 1.7938 -2.2749 35 1 5.2954 1.4313 -1.5228 36 1 3.9710 0.2451 -1.4330 37 1 4.0076 0.4944 1.4044 38 1 6.4254 4.5110 0.6052 39 1 5.9415 6.7632 1.4683 40 1 4.6987 7.0516 3.5721 41 1 3.9336 5.0890 4.8350 42 1 4.8367 3.5773 7.1595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601379336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:42 Heat of formation + Delta-G solvation = -97.634388 kcal Electronic energy + Delta-G solvation = -28293.763886 eV Core-core repulsion = 24492.232722 eV Total energy + Delta-G solvation = -3801.531164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -37.82257 -37.40162 -36.10770 -34.99645 -34.64370 -33.71790 -30.81571 -30.08971 -29.53781 -29.12836 -28.18779 -25.43466 -23.14298 -21.60769 -21.19379 -20.89256 -18.67466 -17.64037 -17.29487 -16.59340 -16.34030 -15.82282 -15.28827 -15.02053 -14.59685 -14.39724 -14.23977 -14.03257 -13.68874 -13.26127 -13.18924 -13.15545 -12.85571 -12.67297 -12.58586 -12.13723 -11.83441 -11.66372 -11.38273 -11.30020 -11.20119 -11.07628 -11.05705 -10.87202 -10.84269 -10.54250 -10.44714 -10.34361 -9.94618 -9.80147 -9.46153 -9.28852 -9.12252 -8.57242 -7.99539 -7.46894 -7.45715 -6.87637 -4.63968 1.63756 1.80369 2.38062 2.64246 2.78274 3.06107 3.11257 3.20228 3.90436 4.07818 4.46621 4.56661 4.80349 4.93131 5.06483 5.07795 5.12989 5.30852 5.44256 5.53772 5.58359 5.73101 5.76313 5.77529 5.82577 5.87945 6.04846 6.17199 6.25499 6.40120 6.56752 6.63932 6.89589 7.05270 7.16074 7.37736 7.52553 7.74053 7.83100 7.92648 8.00658 8.25802 8.50980 8.67846 8.71044 10.07302 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.006488 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.595203 B = 4314.645143 C = 5402.871989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.226 6.226 3 C -0.061 4.061 4 H 0.100 0.900 5 C 0.080 3.920 6 O -0.537 6.537 7 C 0.187 3.813 8 H 0.090 0.910 9 C -0.177 4.177 10 N -1.093 6.093 11 S 2.700 3.300 12 O -1.004 7.004 13 O -0.962 6.962 14 C -0.761 4.761 15 C -0.010 4.010 16 C -0.248 4.248 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.199 3.801 20 C -0.450 4.450 21 H 0.115 0.885 22 C 0.079 3.921 23 N -0.794 5.794 24 Si 0.914 3.086 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.254 1.254 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.385 0.615 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.420 0.580 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 -2.087 -8.384 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.000 6.000 3 C -0.191 4.191 4 H 0.118 0.882 5 C 0.000 4.000 6 O -0.346 6.346 7 C 0.077 3.923 8 H 0.108 0.892 9 C -0.236 4.236 10 N -0.852 5.852 11 S 2.796 3.204 12 O -0.994 6.994 13 O -0.952 6.952 14 C -0.856 4.856 15 C -0.030 4.030 16 C -0.268 4.268 17 C -0.099 4.099 18 C -0.174 4.174 19 C 0.194 3.806 20 C -0.479 4.479 21 H 0.132 0.868 22 C -0.140 4.140 23 N -0.419 5.419 24 Si 0.738 3.262 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.178 1.178 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.237 0.763 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.257 0.743 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.288 -3.537 -8.704 12.528 hybrid contribution -1.996 1.397 1.361 2.791 sum -10.284 -2.139 -7.343 12.817 Atomic orbital electron populations 1.23428 0.96018 1.06014 1.04461 1.86819 1.05252 1.10461 1.97509 1.23741 1.00483 0.94817 1.00069 0.88215 1.22047 0.93654 0.96666 0.87672 1.86761 1.63118 1.67842 1.16860 1.20176 0.88093 0.97343 0.86702 0.89222 1.22458 1.02987 1.02076 0.96072 1.55523 1.44475 1.41481 1.43672 1.01112 0.72221 0.74582 0.72464 1.93442 1.64107 1.87695 1.54199 1.93548 1.81814 1.68879 1.50955 1.30082 1.24204 1.18223 1.13056 1.20301 0.93908 0.92329 0.96460 1.20487 1.10565 0.95652 1.00106 1.20900 0.96905 0.97372 0.94721 1.21502 1.03610 0.92092 1.00246 1.16990 0.83402 0.93171 0.87012 1.20182 1.35930 1.00598 0.91194 0.86790 1.25932 0.92594 0.97099 0.98335 1.69775 1.32687 1.29172 1.10279 0.86195 0.80305 0.81332 0.78371 1.18928 1.20632 1.17778 0.90640 0.91049 0.88516 0.92945 0.94878 0.76338 0.92208 0.90676 0.91215 0.74323 0.87654 0.88976 0.89103 0.86257 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 10.45 101.05 1.06 -0.15 16 2 S -0.23 -2.83 18.94 -107.50 -2.04 -4.87 16 3 C -0.06 -0.75 2.59 -26.73 -0.07 -0.82 16 4 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 5 C 0.08 1.04 6.58 37.16 0.24 1.28 16 6 O -0.54 -8.47 7.40 -35.23 -0.26 -8.73 16 7 C 0.19 2.76 2.50 -67.93 -0.17 2.59 16 8 H 0.09 1.36 7.75 -51.93 -0.40 0.96 16 9 C -0.18 -2.40 9.28 37.16 0.34 -2.06 16 10 N -1.09 -19.31 3.42 -4.89 -0.02 -19.32 16 11 S 2.70 59.18 5.01 -107.50 -0.54 58.64 16 12 O -1.00 -22.99 15.99 -57.17 -0.91 -23.90 16 13 O -0.96 -24.38 15.97 -57.17 -0.91 -25.29 16 14 C -0.76 -17.47 5.67 -38.87 -0.22 -17.69 16 15 C -0.01 -0.22 9.53 -39.66 -0.38 -0.60 16 16 C -0.25 -5.23 10.05 -39.29 -0.39 -5.63 16 17 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 18 C -0.15 -3.61 8.62 -38.87 -0.33 -3.94 16 19 C 0.20 4.73 5.34 -106.82 -0.57 4.16 16 20 C -0.45 -10.50 4.92 -37.74 -0.19 -10.69 16 21 H 0.11 2.53 4.12 -52.49 -0.22 2.31 16 22 C 0.08 1.85 5.34 -17.34 -0.09 1.76 16 23 N -0.79 -19.34 11.06 55.55 0.61 -18.72 16 24 Si 0.91 18.17 29.56 -169.99 -5.02 13.14 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.25 -4.77 7.11 56.52 0.40 -4.37 16 28 H 0.07 0.69 7.02 -51.92 -0.36 0.33 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.37 6.72 -51.93 -0.35 0.02 16 33 H 0.38 5.99 7.29 45.56 0.33 6.32 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.15 7.32 -51.93 -0.38 0.77 16 36 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 37 H 0.42 7.38 6.84 -34.46 -0.24 7.14 16 38 H 0.11 2.16 7.35 -52.48 -0.39 1.78 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.12 2.83 6.62 -52.49 -0.35 2.48 16 42 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -29.55 352.64 -9.75 -39.29 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -4.80 Total: 18.36 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -1.17 Total: -33.91 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.60 Total: -38.04 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -2.09 Total: -57.92 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.14 kcal Atomic # 16 Polarization: 56.35 SS G_CDS: -2.57 Total: 53.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.55 -9.75 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601379336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.342 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds