Wall clock time and date at job start Wed Apr 1 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81404 * 102.99826 * 2 1 4 4 H 1.09003 * 109.47009 * 305.00039 * 3 2 1 5 5 C 1.53001 * 109.47071 * 64.99709 * 3 2 1 6 6 O 1.42899 * 109.46885 * 65.00384 * 5 3 2 7 7 C 1.52998 * 109.47030 * 185.00184 * 3 2 1 8 8 H 1.09001 * 109.47097 * 179.97438 * 7 3 2 9 9 C 1.52997 * 109.47254 * 59.99746 * 7 3 2 10 10 N 1.46503 * 109.47024 * 299.99566 * 7 3 2 11 11 S 1.65593 * 120.00379 * 211.95634 * 10 7 3 12 12 O 1.42100 * 106.40192 * 309.54946 * 11 10 7 13 13 O 1.42102 * 106.40473 * 176.63016 * 11 10 7 14 14 C 1.76203 * 107.21710 * 63.08710 * 11 10 7 15 15 C 1.37633 * 120.13175 * 253.79977 * 14 11 10 16 16 C 1.38612 * 120.25083 * 179.97438 * 15 14 11 17 17 C 1.38657 * 120.50134 * 359.97438 * 16 15 14 18 18 C 1.37592 * 120.24792 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12510 * 73.79742 * 14 11 10 20 20 C 1.41400 * 120.24610 * 0.04868 * 19 14 11 21 21 H 1.07995 * 119.99352 * 322.96773 * 20 19 14 22 22 C 1.39945 * 119.99959 * 142.96535 * 20 19 14 23 23 N 1.30825 * 120.00157 * 356.73431 * 22 20 19 24 24 Si 1.86794 * 119.99757 * 176.73138 * 22 20 19 25 25 H 1.48502 * 109.47397 * 89.99961 * 24 22 20 26 26 H 1.48502 * 109.47511 * 210.00028 * 24 22 20 27 27 H 1.48506 * 109.47370 * 330.00070 * 24 22 20 28 28 H 1.08998 * 109.47670 * 300.00096 * 1 2 3 29 29 H 1.09001 * 109.47061 * 60.00595 * 1 2 3 30 30 H 1.09002 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46764 * 185.00059 * 5 3 2 32 32 H 1.08994 * 109.47052 * 304.99776 * 5 3 2 33 33 H 0.96700 * 113.99943 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47278 * 60.00484 * 9 7 3 35 35 H 1.09007 * 109.46965 * 179.97438 * 9 7 3 36 36 H 1.09001 * 109.47102 * 300.00039 * 9 7 3 37 37 H 0.96999 * 119.99727 * 31.95817 * 10 7 3 38 38 H 1.08004 * 119.87331 * 0.25646 * 15 14 11 39 39 H 1.08002 * 119.74689 * 179.97438 * 16 15 14 40 40 H 1.07994 * 119.87196 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.12953 * 180.02562 * 18 17 16 42 42 H 0.97001 * 119.99899 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7426 2.4016 1.3073 6 8 2.4729 1.8451 2.4024 7 6 3.7369 1.9413 -0.1258 8 1 3.9820 3.0033 -0.1262 9 6 4.2162 1.3072 -1.4331 10 7 4.3990 1.2873 1.0057 11 16 5.8155 1.9017 1.6041 12 8 6.6781 2.0802 0.4890 13 8 6.1554 1.1036 2.7296 14 6 5.4643 3.5131 2.2244 15 6 5.8836 4.6264 1.5323 16 6 5.6082 5.8952 2.0178 17 6 4.9081 6.0584 3.2035 18 6 4.4791 4.9597 3.9120 19 6 4.7540 3.6666 3.4292 20 6 4.3190 2.5301 4.1493 21 1 3.9703 1.6561 3.6194 22 6 4.3404 2.5380 5.5486 23 7 4.8223 3.5717 6.1896 24 14 3.6808 1.0727 6.5010 25 1 4.7786 0.1010 6.7372 26 1 3.1382 1.5330 7.8044 27 1 2.6011 0.4191 5.7185 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9074 3.4785 1.2706 32 1 0.6796 2.2010 1.4400 33 1 2.2210 2.2022 3.2650 34 1 3.7236 1.7938 -2.2749 35 1 5.2954 1.4313 -1.5228 36 1 3.9710 0.2451 -1.4330 37 1 4.0076 0.4944 1.4044 38 1 6.4254 4.5110 0.6052 39 1 5.9415 6.7632 1.4683 40 1 4.6987 7.0516 3.5721 41 1 3.9336 5.0890 4.8350 42 1 4.8367 3.5773 7.1595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601379336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:42 Heat of formation + Delta-G solvation = -117.573914 kcal Electronic energy + Delta-G solvation = -28294.628529 eV Core-core repulsion = 24492.232722 eV Total energy + Delta-G solvation = -3802.395807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.36792 -38.75874 -37.89415 -36.49706 -36.24789 -35.44993 -32.12885 -31.73654 -31.27055 -30.11263 -29.09647 -27.18324 -24.23222 -23.33455 -22.84879 -22.14127 -20.24744 -19.35160 -18.78456 -17.89705 -17.65305 -17.47724 -16.95601 -16.33762 -15.96037 -15.73568 -15.52668 -15.42768 -14.91534 -14.86772 -14.65258 -14.35433 -14.09595 -13.86927 -13.76428 -13.51165 -13.28269 -13.04221 -12.86639 -12.80226 -12.75785 -12.71452 -12.64170 -12.46789 -12.29024 -12.16441 -12.05459 -11.65047 -11.51735 -11.23928 -11.03441 -10.70932 -10.36796 -9.97202 -9.73635 -9.21473 -8.62023 -8.41607 -6.42013 0.01145 0.62176 0.82718 1.05851 1.44162 1.56268 1.57403 1.78370 2.26155 2.52222 2.79412 3.14176 3.49322 3.59054 3.76902 3.97634 4.06013 4.29254 4.38553 4.40759 4.44243 4.48275 4.57379 4.65119 4.69761 4.74604 4.77586 4.79090 5.00881 5.05154 5.11916 5.32800 5.37574 5.44303 5.48460 5.64430 5.79705 6.00581 6.09233 6.28157 6.50550 6.67194 6.89861 6.95928 7.17992 8.35330 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.006488 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.595203 B = 4314.645143 C = 5402.871989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.269 6.269 3 C -0.050 4.050 4 H 0.130 0.870 5 C 0.077 3.923 6 O -0.555 6.555 7 C 0.177 3.823 8 H 0.085 0.915 9 C -0.172 4.172 10 N -1.080 6.080 11 S 2.713 3.287 12 O -1.018 7.018 13 O -1.002 7.002 14 C -0.773 4.773 15 C -0.022 4.022 16 C -0.246 4.246 17 C -0.080 4.080 18 C -0.174 4.174 19 C 0.182 3.818 20 C -0.459 4.459 21 H 0.121 0.879 22 C 0.041 3.959 23 N -0.828 5.828 24 Si 0.967 3.033 25 H -0.285 1.285 26 H -0.270 1.270 27 H -0.235 1.235 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.383 0.617 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.421 0.579 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.093 -1.887 -9.743 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.044 6.044 3 C -0.180 4.180 4 H 0.148 0.852 5 C -0.003 4.003 6 O -0.364 6.364 7 C 0.068 3.932 8 H 0.103 0.897 9 C -0.231 4.231 10 N -0.841 5.841 11 S 2.810 3.190 12 O -1.008 7.008 13 O -0.992 6.992 14 C -0.867 4.867 15 C -0.042 4.042 16 C -0.266 4.266 17 C -0.099 4.099 18 C -0.194 4.194 19 C 0.178 3.822 20 C -0.488 4.488 21 H 0.138 0.862 22 C -0.174 4.174 23 N -0.454 5.454 24 Si 0.789 3.211 25 H -0.211 1.211 26 H -0.194 1.194 27 H -0.158 1.158 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.259 0.741 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.219 -3.322 -10.081 14.734 hybrid contribution -1.419 1.387 1.657 2.585 sum -11.639 -1.935 -8.424 14.497 Atomic orbital electron populations 1.23466 0.92613 1.07027 1.05486 1.86999 1.09013 1.10768 1.97595 1.23679 0.98590 0.94963 1.00757 0.85181 1.22196 0.94685 0.96270 0.87106 1.86707 1.64105 1.68154 1.17398 1.20444 0.89836 0.96885 0.85996 0.89720 1.22410 1.01816 1.02479 0.96405 1.55154 1.43523 1.41231 1.44234 1.00493 0.72882 0.74010 0.71663 1.93416 1.65338 1.87814 1.54241 1.93487 1.83151 1.69816 1.52777 1.30221 1.24259 1.19029 1.13188 1.20564 0.94055 0.92592 0.96973 1.20842 1.09534 0.96357 0.99895 1.21217 0.96012 0.98130 0.94541 1.21528 1.04680 0.92756 1.00477 1.17207 0.83846 0.93683 0.87479 1.20379 1.36104 1.00817 0.91524 0.86164 1.26642 0.92635 0.99080 0.99076 1.69832 1.34148 1.30754 1.10677 0.85415 0.79578 0.78219 0.77938 1.21125 1.19443 1.15789 0.90389 0.89177 0.87540 0.93535 0.92620 0.76595 0.89224 0.92820 0.91079 0.74059 0.86519 0.85996 0.86497 0.87290 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 10.45 113.37 1.18 -0.60 16 2 S -0.27 -6.15 18.94 -56.49 -1.07 -7.22 16 3 C -0.05 -1.12 2.59 30.59 0.08 -1.04 16 4 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 5 C 0.08 1.87 6.58 71.98 0.47 2.34 16 6 O -0.55 -17.17 7.40 -148.98 -1.10 -18.27 16 7 C 0.18 5.00 2.50 44.99 0.11 5.11 16 8 H 0.08 2.48 7.75 -2.39 -0.02 2.46 16 9 C -0.17 -4.40 9.28 71.98 0.67 -3.74 16 10 N -1.08 -37.88 3.42 -169.39 -0.58 -38.46 16 11 S 2.71 120.27 5.01 -56.49 -0.28 119.99 16 12 O -1.02 -46.88 15.99 -128.00 -2.05 -48.93 16 13 O -1.00 -52.02 15.97 -128.00 -2.04 -54.06 16 14 C -0.77 -35.61 5.67 22.73 0.13 -35.48 16 15 C -0.02 -0.95 9.53 22.22 0.21 -0.74 16 16 C -0.25 -9.96 10.05 22.46 0.23 -9.73 16 17 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 18 C -0.17 -8.18 8.62 22.73 0.20 -7.98 16 19 C 0.18 8.77 5.34 -21.29 -0.11 8.66 16 20 C -0.46 -21.75 4.92 23.46 0.12 -21.63 16 21 H 0.12 5.41 4.12 -2.91 -0.01 5.40 16 22 C 0.04 1.94 5.34 85.26 0.45 2.40 16 23 N -0.83 -41.12 11.06 21.83 0.24 -40.88 16 24 Si 0.97 37.45 29.56 68.60 2.03 39.48 16 25 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 27 H -0.24 -8.29 7.11 99.48 0.71 -7.59 16 28 H 0.08 1.17 7.02 -2.39 -0.02 1.15 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.10 6.72 -2.39 -0.02 1.09 16 33 H 0.38 11.92 7.29 -74.06 -0.54 11.38 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.60 7.32 -2.38 -0.02 1.59 16 36 H 0.07 1.80 6.91 -2.39 -0.02 1.79 16 37 H 0.42 14.77 6.84 -96.75 -0.66 14.11 16 38 H 0.12 4.68 7.35 -2.91 -0.02 4.66 16 39 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.11 5.27 6.62 -2.91 -0.02 5.25 16 42 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 Total: -1.00 -63.86 352.64 -1.03 -64.89 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -0.13 Total: 49.03 kcal Atomic # 6 Polarization: -69.53 SS G_CDS: 3.96 Total: -65.57 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -0.34 Total: -79.34 kcal Atomic # 8 Polarization: -116.07 SS G_CDS: -5.19 Total: -121.26 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 114.12 SS G_CDS: -1.35 Total: 112.77 kcal Total: -63.86 -1.03 -64.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601379336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.682 kcal (2) G-P(sol) polarization free energy of solvation -63.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds