Wall clock time and date at job start Wed Apr 1 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00187 * 2 1 4 4 C 1.52997 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47208 * 64.99966 * 4 3 2 6 6 C 1.46498 * 120.00241 * 270.00051 * 5 4 3 7 7 C 1.50707 * 109.47285 * 270.00191 * 6 5 4 8 8 H 1.08006 * 119.99329 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00287 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99925 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99913 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46845 * 90.00301 * 11 9 7 13 13 H 1.48499 * 109.47279 * 210.00072 * 11 9 7 14 14 H 1.48499 * 109.47328 * 330.00534 * 11 9 7 15 15 C 1.34776 * 120.00198 * 89.99936 * 5 4 3 16 16 O 1.21279 * 120.00488 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99842 * 0.02562 * 15 5 4 18 18 O 1.42901 * 109.47012 * 179.97438 * 17 15 5 19 19 C 1.35971 * 116.99902 * 179.97438 * 18 17 15 20 20 C 1.38689 * 120.03590 * 0.25602 * 19 18 17 21 21 C 1.38154 * 119.98291 * 180.25501 * 20 19 18 22 22 C 1.38476 * 120.05078 * 359.48616 * 21 20 19 23 23 F 1.35102 * 119.96302 * 180.27955 * 22 21 20 24 24 C 1.38432 * 120.06454 * 0.25792 * 22 21 20 25 25 C 1.38255 * 120.02356 * 0.02562 * 24 22 21 26 26 Cl 1.73595 * 120.02946 * 180.02562 * 25 24 22 27 27 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47334 * 299.99954 * 1 2 3 29 29 H 1.09001 * 109.46806 * 60.00668 * 1 2 3 30 30 H 1.09001 * 109.47303 * 59.99446 * 3 2 1 31 31 H 1.09005 * 109.47283 * 300.00063 * 3 2 1 32 32 H 1.09003 * 109.47461 * 304.99809 * 4 3 2 33 33 H 1.09004 * 109.46966 * 184.99717 * 4 3 2 34 34 H 1.09009 * 109.46845 * 29.99521 * 6 5 4 35 35 H 1.08999 * 109.47552 * 150.00015 * 6 5 4 36 36 H 0.97006 * 119.99664 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47606 * 59.99794 * 17 15 5 38 38 H 1.09009 * 109.46841 * 299.99678 * 17 15 5 39 39 H 1.07997 * 120.00714 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.97709 * 179.77131 * 21 20 19 41 41 H 1.08004 * 119.98567 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1063 -0.8926 -1.3403 7 6 5.5018 -1.2983 -0.9411 8 1 6.2203 -0.5462 -0.6503 9 6 5.8611 -2.6293 -0.9471 10 7 7.0787 -2.9833 -0.5983 11 14 4.6180 -3.9301 -1.4494 12 1 4.7035 -4.1567 -2.9145 13 1 4.9119 -5.1980 -0.7344 14 1 3.2505 -3.4695 -1.0987 15 6 4.2634 1.3328 -2.3200 16 8 4.6291 0.8190 -3.3559 17 6 4.1306 2.8311 -2.2278 18 8 4.4887 3.4189 -3.4802 19 6 4.4223 4.7742 -3.5674 20 6 4.0260 5.5219 -2.4687 21 6 3.9538 6.8986 -2.5601 22 6 4.2872 7.5333 -3.7448 23 9 4.2214 8.8800 -3.8305 24 6 4.6881 6.7893 -4.8412 25 6 4.7557 5.4111 -4.7547 26 17 5.2591 4.4780 -6.1293 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9784 2.1765 0.0902 34 1 3.3858 -1.3632 -0.6712 35 1 3.9139 -1.2124 -2.3644 36 1 7.3316 -3.9198 -0.6029 37 1 4.7925 3.2073 -1.4479 38 1 3.0998 3.0903 -1.9859 39 1 3.7695 5.0279 -1.5432 40 1 3.6417 7.4805 -1.7055 41 1 4.9474 7.2856 -5.7647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:41 Heat of formation + Delta-G solvation = -127.465461 kcal Electronic energy + Delta-G solvation = -27746.696067 eV Core-core repulsion = 23375.614448 eV Total energy + Delta-G solvation = -4371.081619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.17934 -40.60746 -39.25978 -37.83198 -37.29536 -36.51335 -35.06003 -32.66565 -31.46293 -30.42982 -29.90225 -28.77395 -26.98568 -26.14224 -23.68221 -22.92404 -22.81674 -21.98625 -18.91105 -18.75801 -17.77360 -17.32567 -17.00809 -16.67260 -16.45406 -16.15042 -15.83133 -15.62631 -15.34388 -15.14179 -14.91499 -14.64568 -14.19214 -14.11374 -13.82368 -13.65146 -13.24609 -12.96123 -12.74623 -12.43648 -12.14911 -12.13950 -11.89583 -11.67008 -11.59247 -11.47755 -11.18651 -11.04775 -11.03217 -10.86490 -10.44293 -10.11444 -9.65930 -9.52838 -9.39969 -9.14970 -8.54972 -8.40324 -7.82813 -6.05769 -4.04326 0.59205 0.75325 1.90047 2.58278 3.03333 3.09792 3.33816 3.39971 3.43172 3.75537 3.82935 3.92443 4.25325 4.36725 4.44091 4.59812 4.68196 4.81789 4.91451 4.94120 5.09964 5.15622 5.22641 5.27958 5.29422 5.35996 5.39104 5.42808 5.46688 5.63983 5.65768 5.67175 6.02427 6.20106 6.75055 6.96822 6.99814 7.19198 7.25983 7.64497 8.09933 8.47158 8.78852 8.96561 9.54652 11.07524 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.002985 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.514543 B = 9376.570446 C =10703.309801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.042 3.958 4 C 0.107 3.893 5 N -0.580 5.580 6 C 0.222 3.778 7 C -0.530 4.530 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.508 3.492 16 O -0.509 6.509 17 C 0.036 3.964 18 O -0.269 6.269 19 C 0.138 3.862 20 C -0.175 4.175 21 C -0.105 4.105 22 C 0.067 3.933 23 F -0.136 7.136 24 C -0.107 4.107 25 C -0.045 4.045 26 Cl -0.034 7.034 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.006 20.764 -0.382 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.037 4.037 4 C -0.018 4.018 5 N -0.313 5.313 6 C 0.102 3.898 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.292 3.708 16 O -0.383 6.383 17 C -0.042 4.042 18 O -0.180 6.180 19 C 0.090 3.910 20 C -0.194 4.194 21 C -0.124 4.124 22 C 0.047 3.953 23 F -0.115 7.115 24 C -0.126 4.126 25 C -0.072 4.072 26 Cl -0.005 7.005 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.470 19.929 -1.199 23.025 hybrid contribution -0.769 -0.195 -0.008 0.793 sum -12.239 19.734 -1.208 23.252 Atomic orbital electron populations 1.22725 0.81733 1.02721 0.99378 1.88067 1.19001 1.26964 1.95189 1.23150 0.95109 0.85602 0.99799 1.21627 0.91251 0.99261 0.89618 1.47767 1.64860 1.08974 1.09677 1.19741 0.97903 0.74000 0.98141 1.21340 0.96104 0.93605 1.45838 0.90820 1.24815 0.95167 0.98347 0.94549 1.69895 1.18187 1.17298 1.48307 0.86882 0.82444 0.81374 0.79301 1.19991 1.21162 1.18606 1.19625 0.79576 0.86769 0.84827 1.90750 1.44541 1.74024 1.29025 1.22848 1.01492 0.94391 0.85491 1.86333 1.81932 1.15335 1.34387 1.18821 0.95522 0.83884 0.92781 1.21113 1.05697 0.93891 0.98655 1.21018 0.99775 0.94499 0.97121 1.17285 1.05722 0.77344 0.94963 1.91514 1.94432 1.28743 1.96794 1.20822 1.00974 0.91302 0.99511 1.19880 1.06999 0.91138 0.89231 1.98420 1.89142 1.72468 1.40459 0.89741 0.94391 0.94440 0.92532 0.93722 0.88106 0.89913 0.93577 0.94797 0.92603 0.88924 0.89458 0.83417 0.83761 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.53 9.53 -35.23 -0.34 -5.86 16 3 C 0.04 0.48 6.28 37.16 0.23 0.71 16 4 C 0.11 1.47 5.62 -4.05 -0.02 1.45 16 5 N -0.58 -11.27 2.42 -175.06 -0.42 -11.70 16 6 C 0.22 5.38 4.05 -5.19 -0.02 5.36 16 7 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 8 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 11 Si 0.87 21.79 27.47 -169.99 -4.67 17.13 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 15 C 0.51 9.94 7.75 -10.99 -0.09 9.86 16 16 O -0.51 -12.67 16.08 -14.35 -0.23 -12.90 16 17 C 0.04 0.49 3.77 36.01 0.14 0.62 16 18 O -0.27 -4.12 9.13 -39.56 -0.36 -4.48 16 19 C 0.14 1.69 6.68 -39.21 -0.26 1.42 16 20 C -0.17 -1.56 9.04 -39.45 -0.36 -1.91 16 21 C -0.11 -0.84 10.02 -39.52 -0.40 -1.24 16 22 C 0.07 0.62 7.30 -39.42 -0.29 0.33 16 23 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 24 C -0.11 -1.04 9.80 -39.50 -0.39 -1.43 16 25 C -0.04 -0.54 6.33 -39.37 -0.25 -0.79 16 26 Cl -0.03 -0.45 28.50 -51.86 -1.48 -1.93 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.47 7.30 -51.93 -0.38 0.09 16 32 H 0.10 1.52 8.07 -51.93 -0.42 1.10 16 33 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.05 1.10 6.17 -51.92 -0.32 0.78 16 35 H 0.03 0.90 6.85 -51.93 -0.36 0.54 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.09 0.98 6.91 -51.93 -0.36 0.62 16 38 H 0.09 0.85 6.79 -51.92 -0.35 0.50 16 39 H 0.15 0.93 6.30 -52.49 -0.33 0.60 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -36.47 368.04 -7.14 -43.62 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.98 Total: -3.58 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.03 Total: 2.44 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.35 Total: -38.69 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.93 Total: -23.25 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.47 -7.14 -43.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.848 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds