Wall clock time and date at job start Wed Apr 1 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00187 * 2 1 4 4 C 1.52997 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47208 * 64.99966 * 4 3 2 6 6 C 1.46498 * 120.00241 * 270.00051 * 5 4 3 7 7 C 1.50707 * 109.47285 * 270.00191 * 6 5 4 8 8 H 1.08006 * 119.99329 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00287 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99925 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99913 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46845 * 90.00301 * 11 9 7 13 13 H 1.48499 * 109.47279 * 210.00072 * 11 9 7 14 14 H 1.48499 * 109.47328 * 330.00534 * 11 9 7 15 15 C 1.34776 * 120.00198 * 89.99936 * 5 4 3 16 16 O 1.21279 * 120.00488 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99842 * 0.02562 * 15 5 4 18 18 O 1.42901 * 109.47012 * 179.97438 * 17 15 5 19 19 C 1.35971 * 116.99902 * 179.97438 * 18 17 15 20 20 C 1.38689 * 120.03590 * 0.25602 * 19 18 17 21 21 C 1.38154 * 119.98291 * 180.25501 * 20 19 18 22 22 C 1.38476 * 120.05078 * 359.48616 * 21 20 19 23 23 F 1.35102 * 119.96302 * 180.27955 * 22 21 20 24 24 C 1.38432 * 120.06454 * 0.25792 * 22 21 20 25 25 C 1.38255 * 120.02356 * 0.02562 * 24 22 21 26 26 Cl 1.73595 * 120.02946 * 180.02562 * 25 24 22 27 27 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47334 * 299.99954 * 1 2 3 29 29 H 1.09001 * 109.46806 * 60.00668 * 1 2 3 30 30 H 1.09001 * 109.47303 * 59.99446 * 3 2 1 31 31 H 1.09005 * 109.47283 * 300.00063 * 3 2 1 32 32 H 1.09003 * 109.47461 * 304.99809 * 4 3 2 33 33 H 1.09004 * 109.46966 * 184.99717 * 4 3 2 34 34 H 1.09009 * 109.46845 * 29.99521 * 6 5 4 35 35 H 1.08999 * 109.47552 * 150.00015 * 6 5 4 36 36 H 0.97006 * 119.99664 * 180.02562 * 10 9 7 37 37 H 1.08996 * 109.47606 * 59.99794 * 17 15 5 38 38 H 1.09009 * 109.46841 * 299.99678 * 17 15 5 39 39 H 1.07997 * 120.00714 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.97709 * 179.77131 * 21 20 19 41 41 H 1.08004 * 119.98567 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1063 -0.8926 -1.3403 7 6 5.5018 -1.2983 -0.9411 8 1 6.2203 -0.5462 -0.6503 9 6 5.8611 -2.6293 -0.9471 10 7 7.0787 -2.9833 -0.5983 11 14 4.6180 -3.9301 -1.4494 12 1 4.7035 -4.1567 -2.9145 13 1 4.9119 -5.1980 -0.7344 14 1 3.2505 -3.4695 -1.0987 15 6 4.2634 1.3328 -2.3200 16 8 4.6291 0.8190 -3.3559 17 6 4.1306 2.8311 -2.2278 18 8 4.4887 3.4189 -3.4802 19 6 4.4223 4.7742 -3.5674 20 6 4.0260 5.5219 -2.4687 21 6 3.9538 6.8986 -2.5601 22 6 4.2872 7.5333 -3.7448 23 9 4.2214 8.8800 -3.8305 24 6 4.6881 6.7893 -4.8412 25 6 4.7557 5.4111 -4.7547 26 17 5.2591 4.4780 -6.1293 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9784 2.1765 0.0902 34 1 3.3858 -1.3632 -0.6712 35 1 3.9139 -1.2124 -2.3644 36 1 7.3316 -3.9198 -0.6029 37 1 4.7925 3.2073 -1.4479 38 1 3.0998 3.0903 -1.9859 39 1 3.7695 5.0279 -1.5432 40 1 3.6417 7.4805 -1.7055 41 1 4.9474 7.2856 -5.7647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:40 Heat of formation + Delta-G solvation = -152.200089 kcal Electronic energy + Delta-G solvation = -27747.768641 eV Core-core repulsion = 23375.614448 eV Total energy + Delta-G solvation = -4372.154193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90335 -41.59547 -40.52989 -38.79755 -38.30884 -37.40799 -36.58647 -34.78047 -32.22590 -31.77279 -30.94257 -29.93050 -28.43754 -27.06699 -24.74651 -24.08980 -23.86854 -23.23793 -20.22554 -19.69584 -19.12307 -18.58437 -18.32786 -17.67555 -17.55912 -17.20657 -16.87479 -16.67345 -16.46608 -16.16287 -15.90806 -15.78360 -15.49769 -15.23934 -14.96646 -14.61953 -14.41001 -14.22662 -14.02551 -13.80617 -13.50269 -13.35430 -13.09600 -12.89565 -12.67819 -12.57043 -12.46854 -12.26523 -12.05798 -11.97690 -11.96476 -11.87102 -11.72140 -10.81622 -10.72710 -10.50346 -10.13453 -9.45380 -9.22195 -8.32863 -6.36302 -0.11656 -0.00329 1.03529 1.32285 1.35852 1.45580 1.53280 1.66966 2.31894 2.32038 2.54252 2.97429 3.03564 3.20251 3.39044 3.60531 3.75011 3.89749 4.00258 4.03477 4.14201 4.19697 4.33504 4.44553 4.49468 4.53786 4.58704 4.66042 4.80303 4.90549 4.94376 4.95443 4.98382 4.98475 5.00505 5.47801 5.50190 5.59647 6.07858 6.25079 6.35548 6.64646 6.66110 7.21830 7.35170 8.83856 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.002985 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.514543 B = 9376.570446 C =10703.309801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.042 3.958 4 C 0.096 3.904 5 N -0.586 5.586 6 C 0.237 3.763 7 C -0.533 4.533 8 H 0.034 0.966 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.940 3.060 12 H -0.279 1.279 13 H -0.274 1.274 14 H -0.240 1.240 15 C 0.495 3.505 16 O -0.580 6.580 17 C 0.048 3.952 18 O -0.307 6.307 19 C 0.116 3.884 20 C -0.162 4.162 21 C -0.091 4.091 22 C 0.063 3.937 23 F -0.138 7.138 24 C -0.108 4.108 25 C -0.065 4.065 26 Cl -0.062 7.062 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.055 0.945 35 H 0.008 0.992 36 H 0.267 0.733 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.184 0.816 40 H 0.180 0.820 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.780 23.283 1.662 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.035 4.035 4 C -0.026 4.026 5 N -0.317 5.317 6 C 0.114 3.886 7 C -0.572 4.572 8 H 0.052 0.948 9 C -0.185 4.185 10 N -0.585 5.585 11 Si 0.764 3.236 12 H -0.205 1.205 13 H -0.199 1.199 14 H -0.163 1.163 15 C 0.283 3.717 16 O -0.459 6.459 17 C -0.030 4.030 18 O -0.219 6.219 19 C 0.069 3.931 20 C -0.180 4.180 21 C -0.109 4.109 22 C 0.044 3.956 23 F -0.116 7.116 24 C -0.127 4.127 25 C -0.093 4.093 26 Cl -0.033 7.033 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.201 0.799 40 H 0.197 0.803 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.280 22.508 0.898 26.671 hybrid contribution 0.135 -0.816 -0.593 1.017 sum -14.145 21.693 0.305 25.899 Atomic orbital electron populations 1.22858 0.79943 1.03114 1.00925 1.87996 1.21155 1.29137 1.95584 1.23246 0.92768 0.84988 1.02467 1.22085 0.93672 1.00747 0.86075 1.47801 1.64658 1.07254 1.12013 1.19232 0.95154 0.77878 0.96296 1.21612 0.97543 0.92953 1.45085 0.94754 1.25754 0.97194 1.00956 0.94587 1.70037 1.20391 1.18047 1.50004 0.85816 0.80792 0.78575 0.78441 1.20519 1.19892 1.16322 1.20779 0.77712 0.89680 0.83543 1.90710 1.47610 1.75961 1.31662 1.22834 1.05038 0.89198 0.85899 1.86274 1.82979 1.17275 1.35409 1.19077 0.97200 0.82870 0.93979 1.21464 1.03983 0.94024 0.98567 1.21402 0.97783 0.94355 0.97409 1.17457 1.05559 0.77264 0.95364 1.91518 1.94418 1.28859 1.96833 1.20920 1.00738 0.90544 1.00492 1.20079 1.08651 0.91721 0.88802 1.98404 1.89597 1.73291 1.41996 0.90145 0.91944 0.93654 0.88335 0.92206 0.90017 0.85144 0.92751 0.97419 0.92355 0.85502 0.84775 0.79916 0.80267 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.42 -11.32 9.53 -148.98 -1.42 -12.74 16 3 C 0.04 0.80 6.28 71.98 0.45 1.25 16 4 C 0.10 2.38 5.62 86.38 0.49 2.86 16 5 N -0.59 -22.42 2.42 -826.15 -2.00 -24.42 16 6 C 0.24 11.68 4.05 85.64 0.35 12.03 16 7 C -0.53 -31.56 9.94 25.60 0.25 -31.30 16 8 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 9 C 0.01 0.79 5.47 84.65 0.46 1.25 16 10 N -0.94 -60.37 13.96 21.44 0.30 -60.07 16 11 Si 0.94 45.90 27.47 68.60 1.88 47.79 16 12 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.24 -10.76 6.54 99.48 0.65 -10.11 16 15 C 0.50 19.25 7.75 87.66 0.68 19.93 16 16 O -0.58 -30.13 16.08 16.01 0.26 -29.87 16 17 C 0.05 1.13 3.77 71.24 0.27 1.40 16 18 O -0.31 -9.04 9.13 -74.18 -0.68 -9.72 16 19 C 0.12 2.58 6.68 22.51 0.15 2.73 16 20 C -0.16 -2.13 9.04 22.36 0.20 -1.92 16 21 C -0.09 -1.03 10.02 22.31 0.22 -0.80 16 22 C 0.06 0.99 7.30 22.37 0.16 1.15 16 23 F -0.14 -2.26 17.27 44.97 0.78 -1.49 16 24 C -0.11 -1.95 9.80 22.32 0.22 -1.73 16 25 C -0.07 -1.51 6.33 22.41 0.14 -1.37 16 26 Cl -0.06 -1.71 28.50 -2.72 -0.08 -1.79 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.96 7.30 -2.38 -0.02 0.94 16 32 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.13 1.90 6.44 -2.38 -0.02 1.88 16 34 H 0.05 2.59 6.17 -2.38 -0.01 2.58 16 35 H 0.01 0.42 6.85 -2.39 -0.02 0.40 16 36 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 37 H 0.13 2.09 6.91 -2.39 -0.02 2.08 16 38 H 0.13 1.87 6.79 -2.38 -0.02 1.85 16 39 H 0.18 1.03 6.30 -2.91 -0.02 1.01 16 40 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -87.97 368.04 5.35 -82.61 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.01 Total: 2.47 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.30 Total: 7.23 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.70 Total: -84.50 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -1.84 Total: -52.33 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.79 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -87.97 5.35 -82.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.589 kcal (2) G-P(sol) polarization free energy of solvation -87.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds