Wall clock time and date at job start Wed Apr 1 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47390 * 89.99794 * 11 9 7 13 13 H 1.48503 * 109.47067 * 210.00006 * 11 9 7 14 14 H 1.48504 * 109.47093 * 329.99809 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38302 * 119.91346 * 269.72377 * 18 15 5 20 20 C 1.38086 * 120.07452 * 179.76614 * 19 18 15 21 21 C 1.38980 * 119.92033 * 0.50951 * 20 19 18 22 22 S 1.76201 * 120.08106 * 179.72288 * 21 20 19 23 23 C 1.81402 * 103.00024 * 0.02562 * 22 21 20 24 24 C 1.38979 * 119.83756 * 359.74482 * 21 20 19 25 25 C 1.38086 * 119.91744 * 0.02562 * 24 21 20 26 26 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 27 27 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 28 28 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 30 30 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 31 31 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 32 32 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 33 33 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 34 34 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 35 35 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 36 36 H 1.07995 * 119.96613 * 359.97438 * 19 18 15 37 37 H 1.07996 * 120.04121 * 180.25428 * 20 19 18 38 38 H 1.08995 * 109.46749 * 59.99600 * 23 22 21 39 39 H 1.08992 * 109.46997 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47158 * 300.00088 * 23 22 21 41 41 H 1.08003 * 120.03801 * 179.97438 * 24 21 20 42 42 H 1.07997 * 119.95287 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 5.1844 3.0607 -4.4484 11 14 7.7111 3.5227 -3.4101 12 1 8.6538 2.5984 -4.0900 13 1 7.7086 4.8316 -4.1116 14 1 8.1382 3.7171 -2.0011 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8343 -2.2327 -0.8020 20 6 0.6405 -2.8276 -1.1594 21 6 0.3430 -3.0334 -2.5012 22 16 -1.1758 -3.7988 -2.9618 23 6 -1.9730 -4.1177 -1.3638 24 6 1.2465 -2.6344 -3.4790 25 6 2.4362 -2.0357 -3.1142 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1765 0.0889 33 1 4.0654 0.7728 -3.3378 34 1 3.4456 2.1934 -2.4627 35 1 5.4820 3.6362 -5.1704 36 1 2.0683 -2.0769 0.2408 37 1 -0.0592 -3.1364 -0.3969 38 1 -2.1217 -3.1749 -0.8375 39 1 -2.9377 -4.5976 -1.5285 40 1 -1.3388 -4.7718 -0.7654 41 1 1.0188 -2.7931 -4.5227 42 1 3.1389 -1.7258 -3.8735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609138683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:47 Heat of formation + Delta-G solvation = -81.698337 kcal Electronic energy + Delta-G solvation = -27355.023268 eV Core-core repulsion = 23554.183143 eV Total energy + Delta-G solvation = -3800.840125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.98354 -37.90630 -36.51211 -35.49061 -35.07764 -32.55699 -31.50763 -31.06541 -29.53254 -29.11249 -26.77030 -25.95180 -23.35997 -23.07974 -22.55119 -21.55186 -18.62005 -17.89861 -17.31041 -16.71593 -16.48752 -16.17657 -15.70229 -15.50021 -15.08073 -14.97064 -14.76955 -14.55372 -14.28937 -14.11418 -13.54804 -13.48182 -13.06525 -12.88617 -12.66008 -12.57028 -12.25998 -11.99365 -11.81140 -11.56409 -11.42924 -11.36098 -11.15293 -11.04753 -11.01359 -10.66316 -10.60562 -10.49554 -10.21586 -10.01264 -9.97730 -9.76283 -9.51358 -8.85000 -8.44343 -8.07587 -7.67792 -6.06411 -4.10514 0.79692 1.18001 1.29194 1.44266 2.12760 3.33288 3.39577 3.40779 3.43842 3.79064 4.02243 4.43139 4.53590 4.69556 4.70899 4.71964 4.89516 5.09629 5.24074 5.27336 5.29003 5.34648 5.43986 5.47044 5.52513 5.56731 5.62208 5.66377 5.69514 5.86058 6.04935 6.08923 6.20761 6.31176 6.35612 6.50474 6.90011 7.19652 7.25383 7.39935 7.60035 7.91082 8.19590 8.92130 9.54876 11.02012 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.003741 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.551050 B = 7483.180261 C = 7864.035239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.035 3.965 4 C 0.125 3.875 5 N -0.977 5.977 6 C 0.257 3.743 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.273 1.273 15 S 2.691 3.309 16 O -0.947 6.947 17 O -0.977 6.977 18 C -0.668 4.668 19 C 0.045 3.955 20 C -0.174 4.174 21 C -0.038 4.038 22 S -0.118 6.118 23 C -0.146 4.146 24 C -0.132 4.132 25 C 0.004 3.996 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 -9.658 7.878 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.043 4.043 4 C -0.002 4.002 5 N -0.816 5.816 6 C 0.135 3.865 7 C -0.568 4.568 8 H 0.080 0.920 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.198 1.198 15 S 2.780 3.220 16 O -0.938 6.938 17 O -0.968 6.968 18 C -0.756 4.756 19 C 0.024 3.976 20 C -0.198 4.198 21 C -0.151 4.151 22 S 0.125 5.875 23 C -0.314 4.314 24 C -0.156 4.156 25 C -0.018 4.018 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.149 0.851 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.262 -10.464 6.786 19.710 hybrid contribution 0.247 1.092 0.855 1.409 sum -15.015 -9.372 7.641 19.279 Atomic orbital electron populations 1.22700 0.81983 1.02207 0.99747 1.87933 1.19234 1.28177 1.95339 1.23245 0.95634 0.84743 1.00639 1.21285 0.90677 1.01473 0.86732 1.57364 1.82236 1.23683 1.18319 1.19079 0.97000 0.90321 0.80096 1.21496 0.99141 1.29071 1.07139 0.92017 1.24919 0.97624 0.96265 0.95105 1.69919 1.35941 1.37444 1.10128 0.86530 0.84527 0.78315 0.78271 1.20381 1.21235 1.19779 1.01976 0.73834 0.72858 0.73321 1.93595 1.59794 1.84771 1.55606 1.93477 1.83972 1.81942 1.37363 1.31300 1.25443 1.17990 1.00853 1.20701 0.90334 0.87462 0.99133 1.21115 0.99266 1.05446 0.93984 1.21908 0.97168 0.99399 0.96645 1.85538 1.15467 1.73603 1.12867 1.23687 1.04046 1.05610 0.98088 1.20766 0.94098 1.02203 0.98559 1.20933 0.95130 0.91021 0.94669 0.94408 0.94196 0.90263 0.92733 0.92304 0.89378 0.87840 0.94322 0.94696 0.92699 0.83818 0.85769 0.89662 0.87416 0.89564 0.85100 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.29 101.05 1.04 1.36 16 2 O -0.39 -5.31 5.95 -35.23 -0.21 -5.52 16 3 C 0.04 0.49 6.28 37.16 0.23 0.72 16 4 C 0.13 2.07 6.07 -4.04 -0.02 2.04 16 5 N -0.98 -19.82 2.71 -115.66 -0.31 -20.14 16 6 C 0.26 6.21 5.10 -5.19 -0.03 6.19 16 7 C -0.53 -14.41 9.38 -34.44 -0.32 -14.73 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 11 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 S 2.69 54.79 5.52 -107.50 -0.59 54.19 16 16 O -0.95 -22.67 16.24 -57.17 -0.93 -23.59 16 17 O -0.98 -20.36 15.82 -57.17 -0.90 -21.27 16 18 C -0.67 -11.44 5.45 -39.54 -0.22 -11.65 16 19 C 0.04 0.66 5.98 -39.61 -0.24 0.42 16 20 C -0.17 -2.15 7.39 -39.36 -0.29 -2.44 16 21 C -0.04 -0.49 6.11 -39.03 -0.24 -0.73 16 22 S -0.12 -1.22 22.56 -107.50 -2.43 -3.64 16 23 C -0.15 -0.97 9.15 101.05 0.92 -0.04 16 24 C -0.13 -1.88 9.79 -39.36 -0.39 -2.27 16 25 C 0.00 0.06 9.51 -39.62 -0.38 -0.32 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.75 5.78 -51.93 -0.30 0.45 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.09 1.40 6.91 -51.93 -0.36 1.04 16 32 H 0.10 1.66 8.11 -51.93 -0.42 1.24 16 33 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 34 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.14 2.05 6.74 -52.49 -0.35 1.70 16 37 H 0.12 1.17 5.65 -52.49 -0.30 0.87 16 38 H 0.08 0.51 7.75 -51.93 -0.40 0.10 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.53 7.75 -51.92 -0.40 0.13 16 41 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.14 2.40 7.61 -52.49 -0.40 2.00 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -32.76 365.70 -9.99 -42.75 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.83 Total: -0.09 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -0.02 Total: -19.79 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.42 Total: -45.00 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -2.04 Total: -50.39 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -3.02 Total: 50.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.76 -9.99 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609138683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.948 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds