Wall clock time and date at job start Wed Apr 1 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47390 * 89.99794 * 11 9 7 13 13 H 1.48503 * 109.47067 * 210.00006 * 11 9 7 14 14 H 1.48504 * 109.47093 * 329.99809 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38302 * 119.91346 * 269.72377 * 18 15 5 20 20 C 1.38086 * 120.07452 * 179.76614 * 19 18 15 21 21 C 1.38980 * 119.92033 * 0.50951 * 20 19 18 22 22 S 1.76201 * 120.08106 * 179.72288 * 21 20 19 23 23 C 1.81402 * 103.00024 * 0.02562 * 22 21 20 24 24 C 1.38979 * 119.83756 * 359.74482 * 21 20 19 25 25 C 1.38086 * 119.91744 * 0.02562 * 24 21 20 26 26 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 27 27 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 28 28 H 1.08998 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 30 30 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 31 31 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 32 32 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 33 33 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 34 34 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 35 35 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 36 36 H 1.07995 * 119.96613 * 359.97438 * 19 18 15 37 37 H 1.07996 * 120.04121 * 180.25428 * 20 19 18 38 38 H 1.08995 * 109.46749 * 59.99600 * 23 22 21 39 39 H 1.08992 * 109.46997 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47158 * 300.00088 * 23 22 21 41 41 H 1.08003 * 120.03801 * 179.97438 * 24 21 20 42 42 H 1.07997 * 119.95287 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 5.1844 3.0607 -4.4484 11 14 7.7111 3.5227 -3.4101 12 1 8.6538 2.5984 -4.0900 13 1 7.7086 4.8316 -4.1116 14 1 8.1382 3.7171 -2.0011 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8343 -2.2327 -0.8020 20 6 0.6405 -2.8276 -1.1594 21 6 0.3430 -3.0334 -2.5012 22 16 -1.1758 -3.7988 -2.9618 23 6 -1.9730 -4.1177 -1.3638 24 6 1.2465 -2.6344 -3.4790 25 6 2.4362 -2.0357 -3.1142 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1765 0.0889 33 1 4.0654 0.7728 -3.3378 34 1 3.4456 2.1934 -2.4627 35 1 5.4820 3.6362 -5.1704 36 1 2.0683 -2.0769 0.2408 37 1 -0.0592 -3.1364 -0.3969 38 1 -2.1217 -3.1749 -0.8375 39 1 -2.9377 -4.5976 -1.5285 40 1 -1.3388 -4.7718 -0.7654 41 1 1.0188 -2.7931 -4.5227 42 1 3.1389 -1.7258 -3.8735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609138683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:46 Heat of formation + Delta-G solvation = -103.351204 kcal Electronic energy + Delta-G solvation = -27355.962207 eV Core-core repulsion = 23554.183143 eV Total energy + Delta-G solvation = -3801.779064 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10634 -39.03097 -38.19009 -37.04340 -36.77539 -34.56728 -32.58790 -32.20197 -30.97947 -29.69968 -28.46353 -27.02396 -24.86162 -24.51142 -23.73717 -22.96905 -20.03489 -19.26430 -18.68151 -18.40599 -18.00103 -17.59277 -16.97086 -16.64212 -16.50981 -16.01534 -15.97029 -15.85435 -15.62260 -15.03910 -14.75027 -14.61298 -14.48003 -14.06429 -13.87872 -13.82308 -13.50371 -13.28376 -13.17335 -13.06662 -13.04129 -12.92866 -12.78447 -12.58989 -12.39717 -12.30698 -12.09134 -11.91302 -11.69150 -11.65888 -11.21745 -11.10730 -10.57473 -10.52466 -9.96795 -9.74991 -8.54940 -8.17854 -6.29558 -0.51515 -0.21574 0.31736 0.44378 1.39660 1.40700 1.44173 1.52757 2.06545 2.42414 2.47856 2.83769 3.12531 3.13791 3.40097 3.77967 3.87908 4.10764 4.24121 4.26254 4.28126 4.29172 4.31726 4.43744 4.56604 4.60243 4.62303 4.66810 4.84449 4.89158 4.92974 4.97290 5.00239 5.04412 5.08854 5.17680 5.23777 5.49146 5.72337 5.76192 5.94215 6.12424 6.29819 6.78865 7.39191 8.89574 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.003741 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.551050 B = 7483.180261 C = 7864.035239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.044 3.956 4 C 0.115 3.885 5 N -0.983 5.983 6 C 0.275 3.725 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.954 3.046 12 H -0.281 1.281 13 H -0.275 1.275 14 H -0.263 1.263 15 S 2.693 3.307 16 O -0.997 6.997 17 O -0.988 6.988 18 C -0.677 4.677 19 C 0.045 3.955 20 C -0.162 4.162 21 C -0.035 4.035 22 S -0.123 6.123 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.017 4.017 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.013 0.987 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.144 0.856 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.212 -10.480 9.679 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.033 4.033 4 C -0.010 4.010 5 N -0.821 5.821 6 C 0.152 3.848 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.779 3.221 12 H -0.207 1.207 13 H -0.200 1.200 14 H -0.187 1.187 15 S 2.788 3.212 16 O -0.988 6.988 17 O -0.979 6.979 18 C -0.770 4.770 19 C 0.024 3.976 20 C -0.187 4.187 21 C -0.148 4.148 22 S 0.121 5.879 23 C -0.311 4.311 24 C -0.163 4.163 25 C -0.039 4.039 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.161 0.839 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.904 -11.265 8.622 22.843 hybrid contribution 0.845 1.197 0.326 1.501 sum -17.059 -10.068 8.948 21.736 Atomic orbital electron populations 1.22894 0.80254 1.03503 1.00488 1.87896 1.21092 1.27843 1.95489 1.23072 0.93453 0.85234 1.01591 1.21549 0.93080 1.01274 0.85131 1.57192 1.82939 1.23523 1.18405 1.18593 0.95542 0.89844 0.80861 1.21841 1.00438 1.29281 1.07064 0.92686 1.25714 1.01315 0.96737 0.94800 1.70013 1.37616 1.38078 1.10681 0.85613 0.79914 0.77798 0.78747 1.20695 1.19983 1.18738 1.01422 0.74599 0.72822 0.72404 1.93524 1.62822 1.85438 1.56998 1.93444 1.84893 1.81995 1.37522 1.30595 1.24446 1.20168 1.01763 1.20832 0.90711 0.87334 0.98731 1.21460 0.98677 1.03830 0.94696 1.22205 0.98073 0.97961 0.96564 1.85686 1.13670 1.72377 1.16167 1.23903 1.04699 1.06880 0.95641 1.20913 0.93561 1.02014 0.99841 1.20867 0.96190 0.92629 0.94175 0.92191 0.94932 0.88682 0.89302 0.93643 0.88694 0.87904 0.96918 0.95196 0.92443 0.83212 0.81862 0.88210 0.85180 0.88423 0.83866 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.29 113.37 1.17 1.62 16 2 O -0.40 -10.36 5.95 -148.98 -0.89 -11.25 16 3 C 0.04 1.18 6.28 71.98 0.45 1.63 16 4 C 0.11 3.83 6.07 86.38 0.52 4.36 16 5 N -0.98 -41.53 2.71 -519.85 -1.41 -42.94 16 6 C 0.27 14.02 5.10 85.63 0.44 14.46 16 7 C -0.55 -30.90 9.38 25.60 0.24 -30.66 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.01 0.78 5.46 84.66 0.46 1.25 16 10 N -0.92 -54.25 13.29 21.45 0.28 -53.97 16 11 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 15 S 2.69 114.78 5.52 -56.49 -0.31 114.47 16 16 O -1.00 -51.11 16.24 -128.00 -2.08 -53.19 16 17 O -0.99 -42.13 15.82 -128.00 -2.02 -44.16 16 18 C -0.68 -23.66 5.45 22.30 0.12 -23.53 16 19 C 0.05 1.27 5.98 22.25 0.13 1.40 16 20 C -0.16 -3.49 7.39 22.41 0.17 -3.33 16 21 C -0.03 -0.81 6.11 22.63 0.14 -0.67 16 22 S -0.12 -2.14 22.56 -56.49 -1.27 -3.41 16 23 C -0.14 -1.18 9.15 113.37 1.04 -0.14 16 24 C -0.14 -3.92 9.79 22.41 0.22 -3.70 16 25 C -0.02 -0.58 9.51 22.25 0.21 -0.37 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.41 5.78 -2.39 -0.01 1.40 16 29 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.09 3.01 6.91 -2.39 -0.02 2.99 16 32 H 0.10 3.37 8.11 -2.39 -0.02 3.35 16 33 H 0.01 0.71 7.61 -2.39 -0.02 0.69 16 34 H 0.03 1.53 8.05 -2.39 -0.02 1.52 16 35 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 36 H 0.15 3.99 6.74 -2.91 -0.02 3.97 16 37 H 0.16 2.20 5.65 -2.91 -0.02 2.19 16 38 H 0.10 0.61 7.75 -2.39 -0.02 0.59 16 39 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.67 7.75 -2.39 -0.02 0.65 16 41 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.13 4.63 7.61 -2.91 -0.02 4.61 16 Total: -1.00 -73.65 365.70 0.66 -72.99 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.02 Total: 12.47 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 5.31 Total: -37.69 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -1.13 Total: -96.91 kcal Atomic # 8 Polarization: -103.60 SS G_CDS: -4.99 Total: -108.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 112.64 SS G_CDS: -1.59 Total: 111.06 kcal Total: -73.65 0.66 -72.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609138683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.361 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds