Wall clock time and date at job start Wed Apr 1 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42103 * 109.47287 * 2 1 4 4 C 1.76202 * 103.00197 * 250.94447 * 2 1 3 5 5 C 1.38235 * 120.00249 * 89.99703 * 4 2 1 6 6 C 1.38234 * 120.00220 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46499 * 109.47329 * 89.99403 * 8 7 6 10 10 S 1.65597 * 120.00171 * 165.00148 * 9 8 7 11 11 O 1.42106 * 104.27716 * 181.07543 * 10 9 8 12 12 O 1.42099 * 104.27656 * 308.92803 * 10 9 8 13 13 C 1.81396 * 104.45036 * 64.99922 * 10 9 8 14 14 C 1.53001 * 109.47366 * 179.97438 * 13 10 9 15 15 C 1.52993 * 109.47321 * 180.02562 * 14 13 10 16 16 C 1.50705 * 109.47069 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00228 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00178 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99591 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47182 * 59.99947 * 20 18 16 22 22 H 1.48509 * 109.46969 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47031 * 299.99420 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 7 6 5 25 25 C 1.38233 * 120.00121 * 0.41161 * 24 7 6 26 26 H 1.08997 * 109.47616 * 169.05251 * 1 2 3 27 27 H 1.09000 * 109.47499 * 289.05607 * 1 2 3 28 28 H 1.09008 * 109.47248 * 49.05865 * 1 2 3 29 29 H 1.07999 * 119.99770 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 32 32 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 33 33 H 0.97002 * 119.99894 * 345.00114 * 9 8 7 34 34 H 1.08993 * 109.47305 * 299.99919 * 13 10 9 35 35 H 1.09002 * 109.47124 * 60.00724 * 13 10 9 36 36 H 1.09005 * 109.47263 * 300.00445 * 14 13 10 37 37 H 1.09005 * 109.46911 * 59.99795 * 14 13 10 38 38 H 1.09003 * 109.47266 * 299.99795 * 15 14 13 39 39 H 1.08998 * 109.47582 * 60.00326 * 15 14 13 40 40 H 0.97005 * 119.99791 * 180.02562 * 19 18 16 41 41 H 1.08004 * 120.00362 * 180.23482 * 24 7 6 42 42 H 1.08002 * 120.00315 * 179.82598 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3658 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8276 -1.4404 -4.1701 8 6 3.1611 -1.9202 -5.5591 9 7 4.6161 -1.9788 -5.7194 10 16 5.2763 -2.8111 -6.9897 11 8 6.6789 -2.6727 -6.8081 12 8 4.6529 -4.0868 -6.9347 13 6 4.7317 -1.8992 -8.4602 14 6 5.2846 -2.5780 -9.7150 15 6 4.8257 -1.8085 -10.9552 16 6 5.3699 -2.4775 -12.1912 17 1 5.9820 -3.3625 -12.1011 18 6 5.0869 -1.9588 -13.4370 19 7 4.3418 -0.8807 -13.5467 20 14 5.7620 -2.7876 -14.9690 21 1 5.2597 -4.1833 -15.0389 22 1 5.3165 -2.0408 -16.1729 23 1 7.2459 -2.7976 -14.9132 24 6 2.6760 -2.3518 -3.1418 25 6 2.3659 -1.9120 -1.8685 26 1 -0.3634 -1.0089 -0.1952 27 1 -0.3634 0.3355 0.9713 28 1 -0.3634 0.6735 -0.7763 29 1 2.2439 1.4069 -2.4584 30 1 2.7992 0.6237 -4.7258 31 1 2.7384 -2.9133 -5.7117 32 1 2.7424 -1.2305 -6.2920 33 1 5.1927 -1.5301 -5.0813 34 1 3.6425 -1.8921 -8.5006 35 1 5.1002 -0.8747 -8.4096 36 1 6.3739 -2.5848 -9.6744 37 1 4.9166 -3.6027 -9.7659 38 1 3.7365 -1.8014 -10.9961 39 1 5.1941 -0.7840 -10.9042 40 1 4.1424 -0.5160 -14.4232 41 1 2.7971 -3.4077 -3.3337 42 1 2.2447 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610591022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:30 Heat of formation + Delta-G solvation = -99.182910 kcal Electronic energy + Delta-G solvation = -24426.455699 eV Core-core repulsion = 20624.857386 eV Total energy + Delta-G solvation = -3801.598313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77248 -36.96516 -36.18103 -35.85895 -35.58483 -34.70422 -32.21380 -31.46713 -31.38823 -29.27420 -27.84341 -26.19405 -23.75789 -23.20845 -22.03658 -20.70922 -19.28879 -18.59350 -17.72276 -17.15079 -16.68168 -16.45198 -16.05711 -15.71505 -15.43341 -15.26625 -15.04104 -14.51514 -14.40692 -14.20572 -14.10988 -13.90107 -13.43802 -13.19613 -13.15828 -12.61386 -12.47363 -12.31249 -12.25763 -11.99622 -11.87612 -11.81904 -11.67975 -11.52269 -11.26314 -10.91566 -10.90173 -10.67184 -10.47745 -9.97952 -9.82371 -9.57293 -9.37761 -9.35513 -9.12529 -8.84195 -8.42572 -6.07663 -4.10929 0.24574 0.54513 0.96557 1.41348 2.21706 2.77286 3.24652 3.30759 3.34697 3.37789 3.48834 3.88170 4.19250 4.33217 4.40689 4.41388 4.56417 4.69417 4.76256 4.90433 4.95113 4.98232 5.13280 5.17343 5.23446 5.28758 5.39552 5.48353 5.55130 5.61468 5.81064 5.84467 5.85062 6.12031 6.23190 6.41093 6.48935 6.78891 6.84416 7.53972 7.63844 7.90004 8.30349 8.95073 9.53846 11.03468 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.001805 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.024770 B =15508.248666 C =16097.111269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.331 4.669 3 O -0.857 6.857 4 C -0.459 4.459 5 C -0.055 4.055 6 C -0.118 4.118 7 C -0.059 4.059 8 C 0.149 3.851 9 N -1.121 6.121 10 S 2.601 3.399 11 O -0.961 6.961 12 O -0.961 6.961 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.118 4.118 25 C -0.046 4.046 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.134 0.866 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -1.434 30.363 31.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.528 4.472 3 O -0.853 6.853 4 C -0.556 4.556 5 C -0.074 4.074 6 C -0.138 4.138 7 C -0.061 4.061 8 C 0.023 3.977 9 N -0.879 5.879 10 S 2.697 3.303 11 O -0.951 6.951 12 O -0.951 6.951 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.137 4.137 25 C -0.066 4.066 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.152 0.848 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.717 -1.918 30.921 31.927 hybrid contribution -0.771 1.774 -2.735 3.349 sum -8.488 -0.145 28.186 29.437 Atomic orbital electron populations 1.27765 1.22331 1.08038 1.07348 1.69508 0.86039 0.99639 0.91968 1.93123 1.73160 1.37246 1.81742 1.27710 1.11883 0.99759 1.16248 1.21118 0.94511 0.99571 0.92239 1.21253 0.99905 0.95278 0.97355 1.20051 0.97135 0.93672 0.95253 1.20295 0.80709 1.02766 0.93888 1.55794 1.13492 1.73555 1.45077 1.05313 0.74089 0.75197 0.75654 1.93588 1.29851 1.86780 1.84891 1.93565 1.77654 1.37981 1.85900 1.30546 1.12079 1.14332 1.17108 1.21506 1.00311 0.99715 0.93009 1.19059 0.96844 0.95242 0.89620 1.21214 1.32139 1.12173 0.91048 0.92392 1.25025 0.95109 0.94990 0.99267 1.69947 1.37687 1.21644 1.24149 0.86603 0.79465 0.79547 0.82095 1.20112 1.21245 1.20107 1.21305 0.99607 1.00168 0.92655 1.20858 0.95150 0.93529 0.97030 0.86984 0.87612 0.89953 0.85449 0.85228 0.88827 0.90425 0.74995 0.85513 0.85245 0.91530 0.91507 0.96141 0.96135 0.92829 0.84763 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.01 10.70 101.05 1.08 -0.92 16 2 S 1.33 6.52 14.19 -107.50 -1.53 5.00 16 3 O -0.86 -10.16 16.90 -35.23 -0.60 -10.75 16 4 C -0.46 -3.26 5.61 -39.58 -0.22 -3.48 16 5 C -0.06 -0.52 9.44 -39.58 -0.37 -0.89 16 6 C -0.12 -1.04 9.70 -39.58 -0.38 -1.43 16 7 C -0.06 -0.50 5.28 -104.63 -0.55 -1.06 16 8 C 0.15 1.31 6.26 -5.20 -0.03 1.28 16 9 N -1.12 -11.36 5.88 -11.66 -0.07 -11.43 16 10 S 2.60 36.09 5.46 -107.50 -0.59 35.50 16 11 O -0.96 -16.43 18.08 -57.54 -1.04 -17.47 16 12 O -0.96 -15.87 17.50 -57.54 -1.01 -16.88 16 13 C -0.61 -8.95 6.07 37.16 0.23 -8.73 16 14 C -0.11 -2.11 5.16 -26.73 -0.14 -2.24 16 15 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 16 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.12 -0.85 9.70 -39.58 -0.38 -1.24 16 25 C -0.05 -0.26 9.75 -39.58 -0.39 -0.64 16 26 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.11 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.13 1.30 7.45 -52.49 -0.39 0.91 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.09 0.80 7.64 -51.93 -0.40 0.40 16 32 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.42 3.74 8.61 -34.47 -0.30 3.45 16 34 H 0.13 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -41.24 384.65 -11.15 -52.39 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.12 Total: -0.61 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: -1.72 Total: -32.28 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.67 Total: -37.20 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.64 Total: -45.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 42.61 SS G_CDS: -2.11 Total: 40.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -41.24 -11.15 -52.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610591022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.794 kcal (2) G-P(sol) polarization free energy of solvation -41.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds