Wall clock time and date at job start Wed Apr 1 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42103 * 109.47287 * 2 1 4 4 C 1.76202 * 103.00197 * 250.94447 * 2 1 3 5 5 C 1.38235 * 120.00249 * 89.99703 * 4 2 1 6 6 C 1.38234 * 120.00220 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46499 * 109.47329 * 89.99403 * 8 7 6 10 10 S 1.65597 * 120.00171 * 165.00148 * 9 8 7 11 11 O 1.42106 * 104.27716 * 181.07543 * 10 9 8 12 12 O 1.42099 * 104.27656 * 308.92803 * 10 9 8 13 13 C 1.81396 * 104.45036 * 64.99922 * 10 9 8 14 14 C 1.53001 * 109.47366 * 179.97438 * 13 10 9 15 15 C 1.52993 * 109.47321 * 180.02562 * 14 13 10 16 16 C 1.50705 * 109.47069 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00228 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00178 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99591 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47182 * 59.99947 * 20 18 16 22 22 H 1.48509 * 109.46969 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47031 * 299.99420 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 7 6 5 25 25 C 1.38233 * 120.00121 * 0.41161 * 24 7 6 26 26 H 1.08997 * 109.47616 * 169.05251 * 1 2 3 27 27 H 1.09000 * 109.47499 * 289.05607 * 1 2 3 28 28 H 1.09008 * 109.47248 * 49.05865 * 1 2 3 29 29 H 1.07999 * 119.99770 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 32 32 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 33 33 H 0.97002 * 119.99894 * 345.00114 * 9 8 7 34 34 H 1.08993 * 109.47305 * 299.99919 * 13 10 9 35 35 H 1.09002 * 109.47124 * 60.00724 * 13 10 9 36 36 H 1.09005 * 109.47263 * 300.00445 * 14 13 10 37 37 H 1.09005 * 109.46911 * 59.99795 * 14 13 10 38 38 H 1.09003 * 109.47266 * 299.99795 * 15 14 13 39 39 H 1.08998 * 109.47582 * 60.00326 * 15 14 13 40 40 H 0.97005 * 119.99791 * 180.02562 * 19 18 16 41 41 H 1.08004 * 120.00362 * 180.23482 * 24 7 6 42 42 H 1.08002 * 120.00315 * 179.82598 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3658 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8276 -1.4404 -4.1701 8 6 3.1611 -1.9202 -5.5591 9 7 4.6161 -1.9788 -5.7194 10 16 5.2763 -2.8111 -6.9897 11 8 6.6789 -2.6727 -6.8081 12 8 4.6529 -4.0868 -6.9347 13 6 4.7317 -1.8992 -8.4602 14 6 5.2846 -2.5780 -9.7150 15 6 4.8257 -1.8085 -10.9552 16 6 5.3699 -2.4775 -12.1912 17 1 5.9820 -3.3625 -12.1011 18 6 5.0869 -1.9588 -13.4370 19 7 4.3418 -0.8807 -13.5467 20 14 5.7620 -2.7876 -14.9690 21 1 5.2597 -4.1833 -15.0389 22 1 5.3165 -2.0408 -16.1729 23 1 7.2459 -2.7976 -14.9132 24 6 2.6760 -2.3518 -3.1418 25 6 2.3659 -1.9120 -1.8685 26 1 -0.3634 -1.0089 -0.1952 27 1 -0.3634 0.3355 0.9713 28 1 -0.3634 0.6735 -0.7763 29 1 2.2439 1.4069 -2.4584 30 1 2.7992 0.6237 -4.7258 31 1 2.7384 -2.9133 -5.7117 32 1 2.7424 -1.2305 -6.2920 33 1 5.1927 -1.5301 -5.0813 34 1 3.6425 -1.8921 -8.5006 35 1 5.1002 -0.8747 -8.4096 36 1 6.3739 -2.5848 -9.6744 37 1 4.9166 -3.6027 -9.7659 38 1 3.7365 -1.8014 -10.9961 39 1 5.1941 -0.7840 -10.9042 40 1 4.1424 -0.5160 -14.4232 41 1 2.7971 -3.4077 -3.3337 42 1 2.2447 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610591022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:30 Heat of formation + Delta-G solvation = -131.234201 kcal Electronic energy + Delta-G solvation = -24427.845548 eV Core-core repulsion = 20624.857386 eV Total energy + Delta-G solvation = -3802.988161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.35126 -38.20546 -37.08042 -36.89996 -36.47372 -36.39277 -34.17287 -32.12949 -31.95068 -29.66493 -29.63015 -26.88004 -25.63265 -23.77205 -22.66174 -22.41742 -20.39295 -19.11510 -18.77363 -18.58067 -17.87335 -17.32855 -17.17417 -16.60738 -16.51167 -16.35991 -15.92072 -15.78522 -15.48848 -14.93304 -14.67804 -14.52124 -14.47784 -14.16588 -13.95171 -13.86646 -13.63642 -13.52014 -13.24484 -13.20016 -13.11232 -12.98413 -12.88745 -12.73996 -12.65707 -12.40928 -12.17568 -12.09115 -11.74986 -11.40232 -11.29610 -11.15392 -10.58291 -10.45723 -10.16385 -9.93682 -9.35715 -8.23822 -6.34935 -0.79356 -0.13177 0.39333 0.96064 1.39416 1.41970 1.49879 1.72127 1.86374 2.38827 2.64585 2.74987 2.99551 3.09712 3.22095 3.57199 3.74501 3.79950 3.93207 4.04886 4.25816 4.32488 4.36369 4.39080 4.45519 4.52229 4.64841 4.68289 4.78479 4.82754 4.96331 5.06279 5.06443 5.18423 5.23858 5.27756 5.44273 5.53570 5.61749 5.78197 5.94410 6.00519 6.18397 6.80794 7.34437 8.87343 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.001805 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.024770 B =15508.248666 C =16097.111269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.497 4.497 2 S 1.397 4.603 3 O -0.930 6.930 4 C -0.467 4.467 5 C -0.084 4.084 6 C -0.130 4.130 7 C -0.069 4.069 8 C 0.141 3.859 9 N -1.107 6.107 10 S 2.637 3.363 11 O -0.992 6.992 12 O -0.984 6.984 13 C -0.612 4.612 14 C -0.107 4.107 15 C 0.030 3.970 16 C -0.553 4.553 17 H 0.061 0.939 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.125 4.125 25 C -0.035 4.035 26 H 0.143 0.857 27 H 0.120 0.880 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.424 0.576 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.150 0.850 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.256 -3.395 31.798 33.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.595 4.405 3 O -0.926 6.926 4 C -0.563 4.563 5 C -0.103 4.103 6 C -0.149 4.149 7 C -0.071 4.071 8 C 0.016 3.984 9 N -0.868 5.868 10 S 2.732 3.268 11 O -0.983 6.983 12 O -0.974 6.974 13 C -0.742 4.742 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.591 4.591 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.145 4.145 25 C -0.054 4.054 26 H 0.161 0.839 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.148 0.852 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.260 0.740 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.168 0.832 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.296 -3.879 32.349 33.620 hybrid contribution -0.704 2.382 -3.077 3.954 sum -9.000 -1.497 29.272 30.661 Atomic orbital electron populations 1.27760 1.20733 1.09521 1.07457 1.68611 0.85795 0.96469 0.89597 1.92993 1.75806 1.40899 1.82883 1.27973 1.11566 1.00406 1.16344 1.21124 0.96561 0.99167 0.93466 1.21303 1.00507 0.95831 0.97309 1.20047 0.98013 0.93585 0.95442 1.20530 0.79420 1.03635 0.94840 1.55401 1.14486 1.73174 1.43700 1.04066 0.72898 0.74492 0.75372 1.93542 1.32134 1.87181 1.85396 1.93533 1.77948 1.39559 1.86314 1.30524 1.13421 1.14849 1.15446 1.21312 1.00461 0.99626 0.93192 1.18966 0.95606 0.94732 0.91508 1.21728 1.32283 1.12540 0.92566 0.92053 1.25953 0.95359 0.95614 1.02744 1.70066 1.38879 1.23033 1.25025 0.85525 0.79016 0.78747 0.77941 1.19110 1.20707 1.19278 1.21663 0.99000 1.00800 0.92997 1.21412 0.92706 0.93453 0.97819 0.83888 0.86178 0.92180 0.87623 0.85161 0.88224 0.89013 0.74018 0.83453 0.83850 0.91654 0.91219 0.97779 0.98109 0.92662 0.83182 0.79357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.91 10.70 113.37 1.21 -1.69 16 2 S 1.40 11.81 14.19 -56.49 -0.80 11.00 16 3 O -0.93 -22.60 16.90 -148.98 -2.52 -25.12 16 4 C -0.47 -5.94 5.61 22.27 0.12 -5.81 16 5 C -0.08 -1.60 9.44 22.27 0.21 -1.39 16 6 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 7 C -0.07 -1.06 5.28 -19.87 -0.10 -1.17 16 8 C 0.14 2.22 6.26 85.63 0.54 2.75 16 9 N -1.11 -20.61 5.88 -190.80 -1.12 -21.74 16 10 S 2.64 69.87 5.46 -56.49 -0.31 69.57 16 11 O -0.99 -33.07 18.08 -127.65 -2.31 -35.38 16 12 O -0.98 -31.04 17.50 -127.65 -2.23 -33.27 16 13 C -0.61 -17.44 6.07 71.98 0.44 -17.00 16 14 C -0.11 -4.24 5.16 30.59 0.16 -4.08 16 15 C 0.03 1.54 4.97 29.85 0.15 1.69 16 16 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 20 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.13 -1.46 9.70 22.27 0.22 -1.25 16 25 C -0.04 -0.27 9.75 22.27 0.22 -0.06 16 26 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 2.39 7.45 -2.91 -0.02 2.37 16 30 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.10 1.48 7.64 -2.39 -0.02 1.46 16 32 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 33 H 0.42 6.98 8.61 -96.74 -0.83 6.15 16 34 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 41 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.19 -0.53 8.06 -2.91 -0.02 -0.56 16 Total: -1.00 -91.22 384.65 -2.72 -93.94 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.19 Total: 11.04 kcal Atomic # 6 Polarization: -64.72 SS G_CDS: 4.07 Total: -60.65 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -0.84 Total: -77.28 kcal Atomic # 8 Polarization: -86.71 SS G_CDS: -7.06 Total: -93.77 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 81.68 SS G_CDS: -1.11 Total: 80.57 kcal Total: -91.22 -2.72 -93.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610591022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.289 kcal (2) G-P(sol) polarization free energy of solvation -91.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds