Wall clock time and date at job start Wed Apr 1 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00022 * 2 1 4 4 C 1.53002 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46634 * 65.00415 * 4 3 2 6 6 C 1.46497 * 120.00012 * 85.00250 * 5 4 3 7 7 C 1.50698 * 109.47056 * 84.02969 * 6 5 4 8 8 H 1.07996 * 120.00303 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00040 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47191 * 89.99644 * 11 9 7 13 13 H 1.48504 * 109.46877 * 209.99823 * 11 9 7 14 14 H 1.48499 * 109.46925 * 329.99443 * 11 9 7 15 15 S 1.65607 * 119.99753 * 264.99679 * 5 4 3 16 16 O 1.42095 * 106.40252 * 27.40814 * 15 5 4 17 17 O 1.42104 * 106.39733 * 160.32613 * 15 5 4 18 18 C 1.76196 * 107.21830 * 273.86776 * 15 5 4 19 19 C 1.38102 * 120.04254 * 14.63865 * 18 15 5 20 20 C 1.38281 * 120.08134 * 179.97438 * 19 18 15 21 21 C 1.38326 * 120.15798 * 0.04485 * 20 19 18 22 22 C 1.38054 * 120.08548 * 359.97438 * 21 20 19 23 23 C 1.38957 * 120.03844 * 194.36696 * 18 15 5 24 24 S 1.76200 * 120.08045 * 359.97438 * 23 18 15 25 25 C 1.81400 * 103.00135 * 180.02562 * 24 23 18 26 26 H 1.09000 * 109.46799 * 299.99481 * 1 2 3 27 27 H 1.08997 * 109.46979 * 59.99764 * 1 2 3 28 28 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47021 * 60.00811 * 3 2 1 30 30 H 1.08996 * 109.47538 * 300.00653 * 3 2 1 31 31 H 1.08997 * 109.47064 * 305.00802 * 4 3 2 32 32 H 1.08998 * 109.47496 * 185.00351 * 4 3 2 33 33 H 1.08994 * 109.46953 * 204.03039 * 6 5 4 34 34 H 1.08997 * 109.47162 * 324.02831 * 6 5 4 35 35 H 0.97002 * 120.00102 * 180.02562 * 10 9 7 36 36 H 1.07997 * 119.95949 * 0.02562 * 19 18 15 37 37 H 1.07999 * 119.92054 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.95786 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.04418 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47011 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47071 * 299.99899 * 25 24 23 42 42 H 1.09005 * 109.46803 * 60.00225 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1827 1.3883 -2.4444 7 6 5.5614 1.9954 -2.4037 8 1 6.2183 1.7883 -1.5718 9 6 5.9839 2.8160 -3.4279 10 7 5.1838 3.0686 -4.4408 11 14 7.6931 3.5680 -3.3778 12 1 8.6553 2.6551 -4.0455 13 1 7.6798 4.8749 -4.0830 14 1 8.1029 3.7719 -1.9651 15 16 4.2424 -1.0692 -1.3166 16 8 3.3999 -1.6527 -0.3324 17 8 4.1966 -1.4282 -2.6908 18 6 5.8983 -1.3499 -0.7839 19 6 6.5943 -0.3501 -0.1334 20 6 7.8937 -0.5697 0.2854 21 6 8.5015 -1.7906 0.0540 22 6 7.8121 -2.7946 -0.5960 23 6 6.5036 -2.5796 -1.0128 24 16 5.6169 -3.8610 -1.8353 25 6 6.8162 -5.2211 -1.8836 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8464 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9785 2.1766 0.0903 33 1 4.0849 0.7683 -3.3355 34 1 3.4367 2.1825 -2.4708 35 1 5.4811 3.6457 -5.1616 36 1 6.1228 0.6043 0.0490 37 1 8.4354 0.2139 0.7942 38 1 9.5166 -1.9585 0.3822 39 1 8.2871 -3.7477 -0.7760 40 1 6.3686 -6.0827 -2.3789 41 1 7.7022 -4.9048 -2.4341 42 1 7.0981 -5.4931 -0.8664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614838459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:50 Heat of formation + Delta-G solvation = -77.064151 kcal Electronic energy + Delta-G solvation = -27344.499560 eV Core-core repulsion = 23543.860389 eV Total energy + Delta-G solvation = -3800.639172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.82386 -37.69433 -36.26880 -35.46712 -34.95669 -32.58355 -31.36126 -31.08359 -29.45102 -28.89378 -26.70807 -25.72918 -23.26490 -22.99090 -22.66881 -21.48661 -18.73322 -17.66088 -17.03357 -16.58217 -16.27579 -16.16407 -15.53377 -15.26436 -15.04539 -14.84312 -14.53488 -14.43712 -14.06455 -14.00651 -13.92325 -13.44306 -12.80926 -12.66362 -12.64810 -12.43296 -12.24497 -11.90139 -11.67831 -11.42376 -11.34109 -11.18158 -11.10826 -11.03539 -10.95866 -10.57670 -10.53429 -10.40258 -10.07253 -9.87157 -9.77844 -9.66399 -9.23222 -9.08480 -8.48404 -8.06038 -7.40349 -6.10305 -4.16896 1.01850 1.21098 1.35918 1.48658 2.29799 3.25303 3.32108 3.32475 3.61233 3.69480 4.21472 4.36552 4.47658 4.83443 4.93713 4.95857 4.99788 5.22153 5.25391 5.36877 5.43380 5.45048 5.49457 5.54028 5.58795 5.69127 5.73900 5.76726 5.87978 5.94307 5.98099 6.08235 6.23865 6.26501 6.47294 6.54091 6.93409 7.33605 7.43382 7.58062 7.68131 7.86209 8.14372 8.86021 9.49060 10.97829 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.006626 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.597462 B = 4224.515684 C = 6359.855139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.037 3.963 4 C 0.130 3.870 5 N -0.979 5.979 6 C 0.243 3.757 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 S 2.682 3.318 16 O -0.942 6.942 17 O -0.942 6.942 18 C -0.645 4.645 19 C 0.002 3.998 20 C -0.147 4.147 21 C -0.060 4.060 22 C -0.159 4.159 23 C 0.003 3.997 24 S -0.102 6.102 25 C -0.148 4.148 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.264 0.736 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -8.835 10.490 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.041 4.041 4 C 0.003 3.997 5 N -0.819 5.819 6 C 0.121 3.879 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.717 3.283 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.198 1.198 15 S 2.768 3.232 16 O -0.932 6.932 17 O -0.932 6.932 18 C -0.734 4.734 19 C -0.018 4.018 20 C -0.168 4.168 21 C -0.080 4.080 22 C -0.183 4.183 23 C -0.112 4.112 24 S 0.143 5.857 25 C -0.317 4.317 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.206 -9.698 9.543 13.607 hybrid contribution 2.953 1.088 0.578 3.200 sum 2.747 -8.610 10.120 13.568 Atomic orbital electron populations 1.22698 0.82444 1.02300 0.99229 1.88183 1.18366 1.26712 1.95189 1.23097 0.95158 0.85553 1.00327 1.21221 0.91955 1.00587 0.85927 1.57420 1.80103 1.25953 1.18384 1.19272 0.96822 0.90782 0.81000 1.21584 1.00036 1.29723 1.06909 0.91858 1.24916 0.97301 0.96258 0.95166 1.69930 1.35979 1.37000 1.09639 0.86629 0.84708 0.78683 0.78235 1.20538 1.21085 1.19772 1.02533 0.73382 0.73043 0.74225 1.93609 1.62471 1.75517 1.61618 1.93582 1.86020 1.81397 1.32180 1.31133 1.28239 0.99328 1.14731 1.21004 0.94149 0.96617 0.90075 1.21271 0.95629 0.97555 1.02377 1.21194 0.99004 0.92893 0.94872 1.21140 0.93583 1.00456 1.03166 1.21221 0.96820 0.95636 0.97494 1.86265 1.21311 1.06921 1.71222 1.23745 1.02276 0.99694 1.05961 0.94736 0.94508 0.90028 0.93012 0.92459 0.90758 0.88200 0.92661 0.94119 0.92581 0.83709 0.85166 0.85440 0.85461 0.86998 0.89336 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.65 8.60 -55.45 -0.48 -7.12 16 3 C 0.04 0.60 6.28 37.16 0.23 0.83 16 4 C 0.13 2.22 4.94 -4.04 -0.02 2.20 16 5 N -0.98 -20.65 1.92 -115.67 -0.22 -20.87 16 6 C 0.24 6.01 5.43 -5.20 -0.03 5.98 16 7 C -0.54 -14.04 9.38 -34.44 -0.32 -14.36 16 8 H 0.06 1.53 5.81 -52.49 -0.31 1.23 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 11 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 S 2.68 59.29 4.69 -107.50 -0.50 58.78 16 16 O -0.94 -21.18 15.12 -65.62 -0.99 -22.17 16 17 O -0.94 -23.70 15.11 -57.17 -0.86 -24.56 16 18 C -0.65 -12.90 5.85 -39.36 -0.23 -13.13 16 19 C 0.00 0.03 8.82 -39.62 -0.35 -0.32 16 20 C -0.15 -2.19 10.04 -39.53 -0.40 -2.59 16 21 C -0.06 -0.81 10.04 -39.62 -0.40 -1.20 16 22 C -0.16 -2.34 9.36 -39.37 -0.37 -2.71 16 23 C 0.00 0.06 6.11 -39.03 -0.24 -0.18 16 24 S -0.10 -1.76 20.27 -107.50 -2.18 -3.94 16 25 C -0.15 -1.57 9.15 101.05 0.92 -0.65 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.07 1.15 7.72 -51.93 -0.40 0.75 16 32 H 0.10 1.54 8.11 -51.93 -0.42 1.11 16 33 H 0.06 1.54 6.86 -51.93 -0.36 1.18 16 34 H 0.04 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.15 2.45 5.42 -52.49 -0.28 2.17 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.44 5.88 -52.49 -0.31 1.13 16 40 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.85 7.74 -51.92 -0.40 0.44 16 42 H 0.08 0.75 7.76 -51.92 -0.40 0.35 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -34.52 368.27 -9.96 -44.48 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.81 Total: 1.67 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.18 Total: -22.89 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.51 Total: -45.42 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -2.33 Total: -53.86 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 57.53 SS G_CDS: -2.68 Total: 54.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.52 -9.96 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614838459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.583 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds