Wall clock time and date at job start Wed Apr 1 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00022 * 2 1 4 4 C 1.53002 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46634 * 65.00415 * 4 3 2 6 6 C 1.46497 * 120.00012 * 85.00250 * 5 4 3 7 7 C 1.50698 * 109.47056 * 84.02969 * 6 5 4 8 8 H 1.07996 * 120.00303 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99820 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00040 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00056 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47191 * 89.99644 * 11 9 7 13 13 H 1.48504 * 109.46877 * 209.99823 * 11 9 7 14 14 H 1.48499 * 109.46925 * 329.99443 * 11 9 7 15 15 S 1.65607 * 119.99753 * 264.99679 * 5 4 3 16 16 O 1.42095 * 106.40252 * 27.40814 * 15 5 4 17 17 O 1.42104 * 106.39733 * 160.32613 * 15 5 4 18 18 C 1.76196 * 107.21830 * 273.86776 * 15 5 4 19 19 C 1.38102 * 120.04254 * 14.63865 * 18 15 5 20 20 C 1.38281 * 120.08134 * 179.97438 * 19 18 15 21 21 C 1.38326 * 120.15798 * 0.04485 * 20 19 18 22 22 C 1.38054 * 120.08548 * 359.97438 * 21 20 19 23 23 C 1.38957 * 120.03844 * 194.36696 * 18 15 5 24 24 S 1.76200 * 120.08045 * 359.97438 * 23 18 15 25 25 C 1.81400 * 103.00135 * 180.02562 * 24 23 18 26 26 H 1.09000 * 109.46799 * 299.99481 * 1 2 3 27 27 H 1.08997 * 109.46979 * 59.99764 * 1 2 3 28 28 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47021 * 60.00811 * 3 2 1 30 30 H 1.08996 * 109.47538 * 300.00653 * 3 2 1 31 31 H 1.08997 * 109.47064 * 305.00802 * 4 3 2 32 32 H 1.08998 * 109.47496 * 185.00351 * 4 3 2 33 33 H 1.08994 * 109.46953 * 204.03039 * 6 5 4 34 34 H 1.08997 * 109.47162 * 324.02831 * 6 5 4 35 35 H 0.97002 * 120.00102 * 180.02562 * 10 9 7 36 36 H 1.07997 * 119.95949 * 0.02562 * 19 18 15 37 37 H 1.07999 * 119.92054 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.95786 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.04418 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47011 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47071 * 299.99899 * 25 24 23 42 42 H 1.09005 * 109.46803 * 60.00225 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1827 1.3883 -2.4444 7 6 5.5614 1.9954 -2.4037 8 1 6.2183 1.7883 -1.5718 9 6 5.9839 2.8160 -3.4279 10 7 5.1838 3.0686 -4.4408 11 14 7.6931 3.5680 -3.3778 12 1 8.6553 2.6551 -4.0455 13 1 7.6798 4.8749 -4.0830 14 1 8.1029 3.7719 -1.9651 15 16 4.2424 -1.0692 -1.3166 16 8 3.3999 -1.6527 -0.3324 17 8 4.1966 -1.4282 -2.6908 18 6 5.8983 -1.3499 -0.7839 19 6 6.5943 -0.3501 -0.1334 20 6 7.8937 -0.5697 0.2854 21 6 8.5015 -1.7906 0.0540 22 6 7.8121 -2.7946 -0.5960 23 6 6.5036 -2.5796 -1.0128 24 16 5.6169 -3.8610 -1.8353 25 6 6.8162 -5.2211 -1.8836 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8464 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9785 2.1766 0.0903 33 1 4.0849 0.7683 -3.3355 34 1 3.4367 2.1825 -2.4708 35 1 5.4811 3.6457 -5.1616 36 1 6.1228 0.6043 0.0490 37 1 8.4354 0.2139 0.7942 38 1 9.5166 -1.9585 0.3822 39 1 8.2871 -3.7477 -0.7760 40 1 6.3686 -6.0827 -2.3789 41 1 7.7022 -4.9048 -2.4341 42 1 7.0981 -5.4931 -0.8664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614838459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:50 Heat of formation + Delta-G solvation = -100.367752 kcal Electronic energy + Delta-G solvation = -27345.510080 eV Core-core repulsion = 23543.860389 eV Total energy + Delta-G solvation = -3801.649692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.01757 -39.04503 -38.02872 -37.08887 -36.70946 -34.55042 -32.53229 -32.28099 -30.99475 -29.79119 -28.47619 -27.00107 -24.93990 -24.29846 -23.92700 -23.03171 -20.19612 -19.16941 -18.60996 -18.34881 -17.82931 -17.58633 -16.97611 -16.51175 -16.46967 -16.36054 -16.01556 -15.83513 -15.33848 -15.10443 -15.03454 -14.82134 -14.50365 -14.00286 -13.92496 -13.52509 -13.50686 -13.42174 -13.25726 -13.01046 -12.95749 -12.85772 -12.77827 -12.55197 -12.37985 -12.26367 -12.04340 -11.95862 -11.73644 -11.58833 -11.14962 -10.87672 -10.56124 -10.48328 -10.33566 -9.78134 -8.68299 -8.14643 -6.28321 -0.43252 -0.21555 0.16890 0.31285 1.24790 1.43092 1.45077 1.54222 2.07791 2.43838 2.45722 2.81552 3.05831 3.17578 3.64186 3.81741 3.97437 4.05021 4.17681 4.19827 4.20796 4.25852 4.29804 4.32231 4.53630 4.56645 4.57993 4.62463 4.73738 4.79161 4.85903 4.89552 4.92560 5.01164 5.14680 5.29846 5.32887 5.48975 5.76176 5.81615 5.93004 6.10821 6.40656 6.82955 7.41555 8.94038 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008020 B = 0.006626 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3490.597462 B = 4224.515684 C = 6359.855139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.403 6.403 3 C 0.035 3.965 4 C 0.119 3.881 5 N -0.980 5.980 6 C 0.260 3.740 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.010 3.990 10 N -0.930 5.930 11 Si 0.955 3.045 12 H -0.283 1.283 13 H -0.284 1.284 14 H -0.249 1.249 15 S 2.686 3.314 16 O -0.959 6.959 17 O -0.990 6.990 18 C -0.675 4.675 19 C -0.020 4.020 20 C -0.148 4.148 21 C -0.046 4.046 22 C -0.156 4.156 23 C -0.013 4.013 24 S -0.200 6.200 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.012 0.988 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.179 0.821 39 H 0.165 0.835 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -9.112 13.034 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C -0.043 4.043 4 C -0.006 4.006 5 N -0.820 5.820 6 C 0.136 3.864 7 C -0.583 4.583 8 H 0.099 0.901 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.780 3.220 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.172 1.172 15 S 2.778 3.222 16 O -0.949 6.949 17 O -0.980 6.980 18 C -0.769 4.769 19 C -0.040 4.040 20 C -0.169 4.169 21 C -0.066 4.066 22 C -0.180 4.180 23 C -0.128 4.128 24 S 0.044 5.956 25 C -0.292 4.292 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.196 0.804 39 H 0.182 0.818 40 H 0.151 0.849 41 H 0.122 0.878 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.262 -9.970 12.112 16.023 hybrid contribution 1.895 1.047 -0.151 2.170 sum 5.157 -8.922 11.961 15.788 Atomic orbital electron populations 1.22903 0.80601 1.03145 1.00739 1.88132 1.20632 1.27964 1.95479 1.23174 0.94359 0.85202 1.01591 1.21588 0.93063 1.01481 0.84486 1.57208 1.80867 1.25238 1.18660 1.18795 0.96653 0.89787 0.81117 1.21948 1.00384 1.28809 1.07186 0.90127 1.25831 1.01306 0.96985 0.94822 1.70080 1.38165 1.38107 1.10578 0.85593 0.79577 0.77463 0.79395 1.20887 1.20994 1.17204 1.01904 0.74357 0.72842 0.73125 1.93563 1.64189 1.75764 1.61407 1.93508 1.87282 1.82284 1.34956 1.30646 1.26936 1.01519 1.17797 1.21198 0.95787 0.96188 0.90821 1.21746 0.94335 0.99265 1.01510 1.21827 1.00780 0.91471 0.92484 1.21679 0.91974 1.02516 1.01874 1.21409 0.98304 0.94848 0.98234 1.86579 1.26194 1.10900 1.71939 1.23900 1.00495 0.96645 1.08120 0.91891 0.94241 0.89658 0.89081 0.93670 0.89257 0.86454 0.97031 0.95196 0.92658 0.83809 0.81701 0.80401 0.81760 0.84892 0.87761 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.97 8.60 -129.65 -1.11 -16.08 16 3 C 0.03 1.12 6.28 71.98 0.45 1.58 16 4 C 0.12 4.10 4.94 86.38 0.43 4.52 16 5 N -0.98 -43.16 1.92 -519.86 -1.00 -44.16 16 6 C 0.26 13.56 5.43 85.63 0.46 14.02 16 7 C -0.54 -28.56 9.38 25.60 0.24 -28.32 16 8 H 0.08 3.85 5.81 -2.91 -0.02 3.84 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 11 Si 0.96 41.86 29.54 68.60 2.03 43.89 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 15 S 2.69 125.32 4.69 -56.49 -0.26 125.05 16 16 O -0.96 -45.47 15.12 -119.93 -1.81 -47.28 16 17 O -0.99 -53.96 15.11 -128.00 -1.93 -55.90 16 18 C -0.68 -27.27 5.85 22.41 0.13 -27.14 16 19 C -0.02 -0.68 8.82 22.25 0.20 -0.48 16 20 C -0.15 -3.82 10.04 22.30 0.22 -3.59 16 21 C -0.05 -1.01 10.04 22.25 0.22 -0.79 16 22 C -0.16 -4.03 9.36 22.41 0.21 -3.82 16 23 C -0.01 -0.47 6.11 22.63 0.14 -0.34 16 24 S -0.20 -7.05 20.27 -56.49 -1.15 -8.20 16 25 C -0.12 -2.30 9.15 113.37 1.04 -1.27 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 31 H 0.09 2.78 7.72 -2.39 -0.02 2.76 16 32 H 0.12 3.55 8.11 -2.39 -0.02 3.53 16 33 H 0.01 0.70 6.86 -2.39 -0.02 0.69 16 34 H 0.03 1.60 8.04 -2.39 -0.02 1.58 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.14 4.76 5.42 -2.91 -0.02 4.74 16 37 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.17 2.88 5.88 -2.91 -0.02 2.86 16 40 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.10 1.63 7.74 -2.39 -0.02 1.61 16 42 H 0.11 1.51 7.76 -2.39 -0.02 1.50 16 Total: -1.00 -81.52 368.27 1.52 -80.00 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 1.03 Total: 19.81 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 5.45 Total: -42.75 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -0.71 Total: -98.54 kcal Atomic # 8 Polarization: -114.40 SS G_CDS: -4.86 Total: -119.26 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 118.27 SS G_CDS: -1.41 Total: 116.86 kcal Total: -81.52 1.52 -80.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614838459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.371 kcal (2) G-P(sol) polarization free energy of solvation -81.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds