Wall clock time and date at job start Wed Apr 1 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81407 * 103.00039 * 2 1 4 4 C 1.52990 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47147 * 305.00121 * 4 3 2 6 6 C 1.53004 * 109.47167 * 185.00098 * 4 3 2 7 7 C 1.53003 * 109.47296 * 173.44653 * 6 4 3 8 8 O 1.42890 * 109.47277 * 185.38227 * 7 6 4 9 9 N 1.46499 * 109.47403 * 65.00223 * 4 3 2 10 10 S 1.65609 * 120.00115 * 232.85814 * 9 4 3 11 11 O 1.42100 * 106.40189 * 177.62797 * 10 9 4 12 12 O 1.42098 * 106.39810 * 310.54488 * 10 9 4 13 13 C 1.76201 * 107.21592 * 64.08644 * 10 9 4 14 14 C 1.38650 * 119.87399 * 269.72632 * 13 10 9 15 15 C 1.38614 * 120.50181 * 179.73084 * 14 13 10 16 16 C 1.37639 * 120.24618 * 0.54282 * 15 14 13 17 17 C 1.40699 * 119.74578 * 359.73679 * 16 15 14 18 18 C 1.41391 * 120.24635 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99916 * 331.68198 * 18 17 16 20 20 C 1.39949 * 120.00122 * 151.68563 * 18 17 16 21 21 N 1.30820 * 119.99605 * 347.90779 * 20 18 17 22 22 Si 1.86800 * 120.00030 * 167.91023 * 20 18 17 23 23 H 1.48492 * 109.47331 * 59.99628 * 22 20 18 24 24 H 1.48500 * 109.47019 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46951 * 299.99542 * 22 20 18 26 26 C 1.37600 * 119.87402 * 90.00648 * 13 10 9 27 27 H 1.09000 * 109.46989 * 60.00407 * 1 2 3 28 28 H 1.08999 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47259 * 300.00227 * 1 2 3 30 30 H 1.09003 * 109.46648 * 300.00151 * 3 2 1 31 31 H 1.09004 * 109.46609 * 59.99618 * 3 2 1 32 32 H 1.08998 * 109.46844 * 293.44391 * 6 4 3 33 33 H 1.08992 * 109.47146 * 53.44533 * 6 4 3 34 34 H 1.09005 * 109.46559 * 305.38643 * 7 6 4 35 35 H 1.09000 * 109.46817 * 65.37710 * 7 6 4 36 36 H 0.96698 * 114.00122 * 179.97438 * 8 7 6 37 37 H 0.97004 * 120.00198 * 52.85027 * 9 4 3 38 38 H 1.08001 * 119.75201 * 0.02562 * 14 13 10 39 39 H 1.07997 * 119.87985 * 180.26111 * 15 14 13 40 40 H 1.08002 * 120.12714 * 179.74949 * 16 15 14 41 41 H 0.97002 * 119.99686 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.12737 * 359.96955 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1694 1.3954 0.8427 6 6 4.0870 3.4254 0.1264 7 6 5.5997 3.5858 0.2913 8 8 5.9094 4.9594 0.5339 9 7 4.2939 1.4150 -1.2509 10 16 5.5196 0.3020 -1.2130 11 8 5.7888 -0.0446 -2.5646 12 8 6.5065 0.8218 -0.3326 13 6 4.8822 -1.1498 -0.4445 14 6 4.9827 -1.3047 0.9296 15 6 4.4807 -2.4390 1.5484 16 6 3.8860 -3.4305 0.8015 17 6 3.7836 -3.2867 -0.5944 18 6 3.1742 -4.2983 -1.3718 19 1 3.1973 -5.3247 -1.0364 20 6 2.5412 -3.9697 -2.5759 21 7 2.3033 -2.7172 -2.8691 22 14 2.0359 -5.3195 -3.7642 23 1 1.0788 -6.2361 -3.0942 24 1 1.3888 -4.7135 -4.9555 25 1 3.2379 -6.0819 -4.1873 26 6 4.2918 -2.1282 -1.2111 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8031 2.2371 -0.8900 31 1 1.8031 2.2371 0.8900 32 1 3.7617 3.9511 -0.7713 33 1 3.5804 3.8436 0.9961 34 1 5.9392 2.9824 1.1333 35 1 6.1013 3.2553 -0.6182 36 1 6.8532 5.1354 0.6491 37 1 3.9411 1.7192 -2.1017 38 1 5.4514 -0.5336 1.5230 39 1 4.5606 -2.5474 2.6199 40 1 3.4991 -4.3153 1.2851 41 1 1.8642 -2.4894 -3.7035 42 1 4.2182 -2.0073 -2.2817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:27 Heat of formation + Delta-G solvation = -113.374351 kcal Electronic energy + Delta-G solvation = -27249.991800 eV Core-core repulsion = 23447.778100 eV Total energy + Delta-G solvation = -3802.213700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -37.85587 -37.51518 -36.49655 -35.93673 -35.20014 -33.68086 -30.77748 -30.15138 -29.46918 -29.16177 -28.29319 -25.36394 -23.29349 -21.74901 -21.23070 -20.93789 -19.07961 -17.82646 -17.31390 -16.98368 -16.33396 -15.94408 -15.56215 -14.96968 -14.89447 -14.72650 -14.33786 -14.12145 -13.82434 -13.60767 -13.31019 -13.21280 -13.10103 -12.86211 -12.58728 -12.17587 -11.83934 -11.71256 -11.51179 -11.45785 -11.29724 -11.26156 -11.21788 -11.13232 -11.03617 -10.80336 -10.69093 -10.57577 -9.88473 -9.79707 -9.66292 -9.30784 -9.20974 -9.05768 -7.96343 -7.46512 -6.98786 -6.75427 -4.41233 1.15263 2.09111 2.31187 2.83159 3.05718 3.06316 3.08477 3.16061 3.61078 3.92028 4.14924 4.33806 4.58276 4.83195 4.91355 5.14295 5.17650 5.23037 5.39656 5.42633 5.49366 5.52129 5.53996 5.69852 5.76661 5.86227 6.03218 6.07566 6.11950 6.27710 6.34420 6.60326 6.95765 6.96141 7.18961 7.29630 7.35980 7.57407 7.63271 7.75132 7.89334 8.13280 8.44964 8.80398 8.84099 10.18391 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.004629 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.805649 B = 6047.795815 C = 6554.294502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.166 6.166 3 C -0.122 4.122 4 C 0.182 3.818 5 H 0.100 0.900 6 C -0.123 4.123 7 C 0.075 3.925 8 O -0.581 6.581 9 N -1.110 6.110 10 S 2.682 3.318 11 O -0.971 6.971 12 O -0.980 6.980 13 C -0.636 4.636 14 C -0.147 4.147 15 C -0.104 4.104 16 C -0.181 4.181 17 C 0.097 3.903 18 C -0.465 4.465 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.786 5.786 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.030 4.030 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.379 0.621 37 H 0.415 0.585 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.282 0.718 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 10.136 4.018 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.060 5.940 3 C -0.272 4.272 4 C 0.073 3.927 5 H 0.118 0.882 6 C -0.164 4.164 7 C -0.003 4.003 8 O -0.387 6.387 9 N -0.867 5.867 10 S 2.779 3.221 11 O -0.962 6.962 12 O -0.970 6.970 13 C -0.729 4.729 14 C -0.169 4.169 15 C -0.123 4.123 16 C -0.201 4.201 17 C 0.094 3.906 18 C -0.495 4.495 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.411 5.411 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.051 4.051 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.226 0.774 37 H 0.249 0.751 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.095 9.572 3.600 10.285 hybrid contribution -1.511 -0.041 -0.542 1.606 sum -2.606 9.531 3.058 10.343 Atomic orbital electron populations 1.23395 0.97759 1.06198 1.03371 1.88601 1.03469 1.04175 1.97713 1.23891 0.98888 0.99651 1.04800 1.20253 0.91541 0.94022 0.86932 0.88186 1.21876 0.95705 0.95347 1.03503 1.22236 0.95479 0.81814 1.00780 1.86375 1.30009 1.27029 1.95291 1.55667 1.57669 1.60175 1.13165 1.01789 0.72988 0.73836 0.73472 1.93547 1.83559 1.83818 1.35246 1.93496 1.56396 1.79544 1.67599 1.29674 1.19630 1.18922 1.04668 1.19880 1.05840 0.99282 0.91874 1.20507 0.99602 0.94857 0.97352 1.21181 1.05715 0.99118 0.94071 1.17579 0.89713 0.92415 0.90903 1.19494 1.31132 0.95261 1.03592 0.90525 1.25849 0.94233 0.96262 0.97999 1.69740 1.30488 1.17899 1.22931 0.86378 0.79512 0.81403 0.79497 1.19257 1.20306 1.18895 1.21134 0.91860 0.92880 0.99228 0.91332 0.88292 0.91686 0.89960 0.89757 0.90647 0.90103 0.92443 0.93096 0.77437 0.75087 0.88238 0.88938 0.88784 0.90679 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.76 101.05 1.09 -0.82 16 2 S -0.17 -2.79 20.97 -107.50 -2.25 -5.04 16 3 C -0.12 -1.53 5.60 37.15 0.21 -1.32 16 4 C 0.18 2.41 2.23 -67.93 -0.15 2.26 16 5 H 0.10 1.43 7.46 -51.93 -0.39 1.04 16 6 C -0.12 -1.43 5.25 -26.73 -0.14 -1.57 16 7 C 0.07 0.97 5.95 37.16 0.22 1.19 16 8 O -0.58 -7.00 13.66 -35.23 -0.48 -7.49 16 9 N -1.11 -16.75 4.71 -4.89 -0.02 -16.77 16 10 S 2.68 51.79 5.58 -107.50 -0.60 51.19 16 11 O -0.97 -21.78 17.27 -57.17 -0.99 -22.76 16 12 O -0.98 -19.21 15.17 -57.17 -0.87 -20.08 16 13 C -0.64 -13.79 4.86 -39.66 -0.19 -13.98 16 14 C -0.15 -3.05 9.18 -39.29 -0.36 -3.41 16 15 C -0.10 -2.17 10.02 -39.66 -0.40 -2.57 16 16 C -0.18 -4.13 9.80 -38.87 -0.38 -4.51 16 17 C 0.10 2.43 5.55 -106.82 -0.59 1.83 16 18 C -0.47 -11.71 9.06 -37.74 -0.34 -12.05 16 19 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 20 C 0.07 1.79 5.23 -17.34 -0.09 1.70 16 21 N -0.79 -18.95 10.88 55.55 0.60 -18.34 16 22 Si 0.91 18.25 29.58 -169.99 -5.03 13.23 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.03 -0.72 8.04 -38.87 -0.31 -1.04 16 27 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.10 1.45 8.14 -51.92 -0.42 1.03 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.05 0.70 7.21 -51.93 -0.37 0.33 16 36 H 0.38 3.00 9.12 45.56 0.42 3.42 16 37 H 0.42 5.52 8.96 -34.48 -0.31 5.21 16 38 H 0.10 1.87 7.59 -52.49 -0.40 1.48 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 42 H 0.14 3.51 5.78 -52.49 -0.30 3.21 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -30.19 374.12 -10.57 -40.76 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.13 Total: 13.96 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: -1.45 Total: -34.30 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.58 Total: -35.11 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -2.34 Total: -50.33 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 49.00 SS G_CDS: -2.85 Total: 46.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.19 -10.57 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.612 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds