Wall clock time and date at job start Wed Apr 1 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 102.99910 * 2 1 4 4 H 1.09000 * 109.47125 * 304.99802 * 3 2 1 5 5 C 1.52996 * 109.47361 * 64.99982 * 3 2 1 6 6 O 1.42895 * 109.47186 * 175.54705 * 5 3 2 7 7 C 1.53001 * 109.46857 * 185.00016 * 3 2 1 8 8 H 1.09003 * 109.47195 * 183.52642 * 7 3 2 9 9 C 1.53007 * 109.47388 * 63.52986 * 7 3 2 10 10 N 1.46501 * 109.47439 * 303.52574 * 7 3 2 11 11 S 1.65602 * 120.00190 * 215.00149 * 10 7 3 12 12 O 1.42092 * 106.39919 * 178.54092 * 11 10 7 13 13 O 1.42107 * 106.40095 * 311.46114 * 11 10 7 14 14 C 1.76196 * 107.21583 * 64.99674 * 11 10 7 15 15 C 1.38658 * 119.87884 * 269.72592 * 14 11 10 16 16 C 1.38612 * 120.49735 * 179.72282 * 15 14 11 17 17 C 1.37637 * 120.25350 * 0.55536 * 16 15 14 18 18 C 1.40696 * 119.74246 * 359.72231 * 17 16 15 19 19 C 1.41396 * 120.24349 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99828 * 154.24361 * 19 18 17 21 21 C 1.39939 * 120.00176 * 334.24897 * 19 18 17 22 22 N 1.30829 * 119.99998 * 347.25477 * 21 19 18 23 23 Si 1.86797 * 120.00093 * 167.25948 * 21 19 18 24 24 H 1.48506 * 109.46999 * 90.00157 * 23 21 19 25 25 H 1.48506 * 109.47288 * 209.99647 * 23 21 19 26 26 H 1.48495 * 109.47500 * 329.99954 * 23 21 19 27 27 C 1.37602 * 119.87255 * 90.00112 * 14 11 10 28 28 H 1.09004 * 109.46932 * 299.99810 * 1 2 3 29 29 H 1.08997 * 109.47151 * 59.99816 * 1 2 3 30 30 H 1.09004 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47040 * 295.54797 * 5 3 2 32 32 H 1.09007 * 109.46913 * 55.54648 * 5 3 2 33 33 H 0.96702 * 113.99834 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47085 * 60.31327 * 9 7 3 35 35 H 1.08996 * 109.47547 * 180.32138 * 9 7 3 36 36 H 1.09003 * 109.46389 * 300.31522 * 9 7 3 37 37 H 0.96996 * 119.99826 * 35.00118 * 10 7 3 38 38 H 1.07997 * 119.74641 * 0.02562 * 15 14 11 39 39 H 1.08002 * 119.87153 * 180.25509 * 16 15 14 40 40 H 1.08003 * 120.13088 * 179.74533 * 17 16 15 41 41 H 0.96995 * 119.99916 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.12775 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 8 2.1552 3.7690 1.3527 7 6 3.7370 1.9412 -0.1257 8 1 3.9878 3.0001 -0.0628 9 6 4.2040 1.3857 -1.4727 10 7 4.4034 1.2162 0.9590 11 16 5.7870 1.8257 1.6347 12 8 6.1615 0.9225 2.6657 13 8 6.6432 2.1701 0.5541 14 6 5.3566 3.3380 2.4299 15 6 5.4251 4.5316 1.7275 16 6 5.0840 5.7280 2.3387 17 6 4.6839 5.7446 3.6556 18 6 4.6162 4.5403 4.3798 19 6 4.2060 4.5450 5.7329 20 1 3.7587 3.6618 6.1647 21 6 4.3796 5.6940 6.5127 22 7 5.1362 6.6698 6.0804 23 14 3.5309 5.8344 8.1708 24 1 4.4167 5.2844 9.2284 25 1 3.2425 7.2622 8.4600 26 1 2.2592 5.0684 8.1425 27 6 4.9593 3.3308 3.7473 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.6554 2.3481 1.3598 32 1 2.1743 1.8637 2.1516 33 1 1.8854 4.2347 2.1561 34 1 3.7125 1.9288 -2.2799 35 1 5.2840 1.5041 -1.5599 36 1 3.9482 0.3281 -1.5379 37 1 4.0341 0.3793 1.2815 38 1 5.7419 4.5284 0.6951 39 1 5.1371 6.6513 1.7809 40 1 4.4226 6.6785 4.1310 41 1 5.2568 7.4660 6.6210 42 1 4.9106 2.4004 4.2936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:52 Heat of formation + Delta-G solvation = -111.936562 kcal Electronic energy + Delta-G solvation = -27144.043842 eV Core-core repulsion = 23341.892490 eV Total energy + Delta-G solvation = -3802.151353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.00104 -37.55281 -36.57763 -35.57645 -35.21799 -33.80206 -31.00492 -30.02931 -29.73690 -29.47356 -28.47911 -25.46060 -23.45492 -21.85564 -21.28704 -20.88175 -19.23325 -18.03289 -17.52309 -17.06793 -16.22774 -15.88638 -15.53172 -15.26301 -15.06356 -14.72050 -14.62272 -14.40246 -13.85585 -13.69937 -13.43078 -13.33368 -13.04265 -12.84165 -12.54360 -12.25905 -12.12293 -11.89026 -11.59282 -11.50866 -11.42656 -11.35721 -11.31570 -11.23597 -10.98164 -10.83702 -10.81679 -10.57819 -10.20496 -9.80037 -9.77139 -9.63801 -9.36420 -9.13042 -7.96555 -7.88264 -7.62863 -6.85445 -4.52286 1.06961 1.42550 2.26588 2.29678 2.66990 3.00006 3.02763 3.08035 3.60764 3.84060 4.27098 4.35607 4.43793 4.55063 4.88190 4.90705 4.99526 5.02979 5.14562 5.30043 5.41845 5.45196 5.48968 5.53400 5.61361 5.77741 5.93759 6.09766 6.21618 6.27522 6.38089 6.69844 6.81820 6.89694 7.07938 7.24842 7.29771 7.43557 7.78356 7.81674 7.84326 7.99233 8.44108 8.71361 8.75581 10.08510 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.004091 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.961494 B = 6842.282380 C = 7770.603645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.232 6.232 3 C -0.061 4.061 4 H 0.102 0.898 5 C 0.082 3.918 6 O -0.556 6.556 7 C 0.181 3.819 8 H 0.112 0.888 9 C -0.175 4.175 10 N -1.113 6.113 11 S 2.684 3.316 12 O -0.974 6.974 13 O -0.975 6.975 14 C -0.625 4.625 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.112 4.112 18 C 0.090 3.910 19 C -0.462 4.462 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.801 5.801 23 Si 0.911 3.089 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.262 1.262 27 C -0.122 4.122 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.387 0.613 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.415 0.585 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.282 0.718 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -6.644 -10.022 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.006 6.006 3 C -0.191 4.191 4 H 0.120 0.880 5 C 0.001 3.999 6 O -0.362 6.362 7 C 0.072 3.928 8 H 0.129 0.871 9 C -0.234 4.234 10 N -0.872 5.872 11 S 2.780 3.220 12 O -0.965 6.965 13 O -0.965 6.965 14 C -0.717 4.717 15 C -0.148 4.148 16 C -0.139 4.139 17 C -0.132 4.132 18 C 0.087 3.913 19 C -0.492 4.492 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.427 5.427 23 Si 0.736 3.264 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.143 4.143 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.093 0.907 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.230 -7.708 -10.661 15.518 hybrid contribution -2.124 1.569 1.798 3.195 sum -10.354 -6.139 -8.862 14.948 Atomic orbital electron populations 1.23467 0.94843 1.06477 1.05048 1.86830 1.06612 1.09554 1.97559 1.23588 1.00324 0.93842 1.01361 0.87953 1.22363 0.96864 0.84462 0.96196 1.86435 1.81425 1.22157 1.46206 1.20418 0.87919 0.97609 0.86863 0.87054 1.22417 1.03069 1.02219 0.95729 1.55770 1.47623 1.35030 1.48754 1.01805 0.72635 0.74398 0.73141 1.93536 1.81028 1.64129 1.57786 1.93511 1.63171 1.84934 1.54859 1.29618 1.19499 1.16411 1.06198 1.20028 1.05169 0.91703 0.97942 1.20773 1.01404 0.96021 0.95697 1.21708 0.99967 0.99470 0.92088 1.17636 0.89917 0.90746 0.93024 1.19562 1.36019 0.98684 0.94975 0.90322 1.25888 0.93240 0.94897 1.00307 1.69749 1.28349 1.06502 1.38132 0.86256 0.80522 0.78280 0.81360 1.19415 1.20123 1.18546 1.20706 1.02480 0.98688 0.92448 0.90386 0.90446 0.88076 0.94329 0.91951 0.76428 0.91690 0.90668 0.91234 0.75017 0.87942 0.88690 0.85519 0.90730 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 10.46 101.05 1.06 0.10 16 2 S -0.23 -2.38 19.15 -107.50 -2.06 -4.44 16 3 C -0.06 -0.68 2.42 -26.73 -0.06 -0.75 16 4 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 5 C 0.08 0.97 6.20 37.16 0.23 1.20 16 6 O -0.56 -7.68 12.74 -35.23 -0.45 -8.13 16 7 C 0.18 2.40 2.34 -67.93 -0.16 2.24 16 8 H 0.11 1.63 6.55 -51.93 -0.34 1.29 16 9 C -0.18 -2.10 9.33 37.16 0.35 -1.75 16 10 N -1.11 -16.52 4.90 -4.89 -0.02 -16.54 16 11 S 2.68 51.03 5.65 -107.50 -0.61 50.42 16 12 O -0.97 -21.09 17.26 -57.17 -0.99 -22.07 16 13 O -0.97 -20.04 16.52 -57.17 -0.94 -20.99 16 14 C -0.62 -13.17 5.81 -39.66 -0.23 -13.40 16 15 C -0.13 -2.65 8.92 -39.29 -0.35 -3.00 16 16 C -0.12 -2.56 10.02 -39.66 -0.40 -2.96 16 17 C -0.11 -2.65 8.69 -38.87 -0.34 -2.99 16 18 C 0.09 2.21 5.58 -106.82 -0.60 1.61 16 19 C -0.46 -11.44 9.07 -37.74 -0.34 -11.78 16 20 H 0.08 1.87 7.88 -52.48 -0.41 1.46 16 21 C 0.07 1.74 5.24 -17.34 -0.09 1.65 16 22 N -0.80 -19.67 10.75 55.55 0.60 -19.07 16 23 Si 0.91 17.80 29.58 -169.99 -5.03 12.77 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.12 -2.81 9.26 -38.87 -0.36 -3.17 16 28 H 0.08 0.55 7.27 -51.92 -0.38 0.17 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.04 0.39 7.12 -51.93 -0.37 0.02 16 32 H 0.06 0.81 7.84 -51.92 -0.41 0.41 16 33 H 0.39 4.90 9.12 45.56 0.42 5.32 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.01 7.63 -51.93 -0.40 0.61 16 36 H 0.07 0.79 7.06 -51.93 -0.37 0.42 16 37 H 0.41 5.63 7.52 -34.47 -0.26 5.37 16 38 H 0.10 1.99 7.59 -52.49 -0.40 1.59 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.13 3.09 6.06 -52.48 -0.32 2.78 16 41 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 42 H 0.11 2.43 7.60 -52.49 -0.40 2.03 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -29.77 369.38 -10.11 -39.88 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -4.88 Total: 15.60 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -1.29 Total: -33.00 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.57 Total: -35.62 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -2.38 Total: -51.19 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 48.65 SS G_CDS: -2.67 Total: 45.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.77 -10.11 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.055 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds