Wall clock time and date at job start Wed Apr 1 2020 02:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99914 * 2 1 4 4 H 1.09003 * 109.46930 * 55.00515 * 3 2 1 5 5 C 1.53000 * 109.47170 * 295.00124 * 3 2 1 6 6 O 1.42904 * 109.46607 * 294.99912 * 5 3 2 7 7 C 1.53000 * 109.47082 * 174.99785 * 3 2 1 8 8 H 1.09003 * 109.47029 * 59.99880 * 7 3 2 9 9 C 1.53000 * 109.47395 * 300.00201 * 7 3 2 10 10 N 1.46495 * 109.47106 * 180.02562 * 7 3 2 11 11 S 1.65603 * 119.99869 * 214.99993 * 10 7 3 12 12 O 1.42097 * 106.40271 * 178.53996 * 11 10 7 13 13 O 1.42093 * 106.40544 * 311.46401 * 11 10 7 14 14 C 1.76208 * 107.21696 * 65.00226 * 11 10 7 15 15 C 1.38659 * 119.87169 * 269.72514 * 14 11 10 16 16 C 1.38618 * 120.49691 * 179.71884 * 15 14 11 17 17 C 1.37637 * 120.24526 * 0.55885 * 16 15 14 18 18 C 1.40695 * 119.74824 * 359.71574 * 17 16 15 19 19 C 1.41393 * 120.24226 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99778 * 155.26182 * 19 18 17 21 21 C 1.39945 * 120.00209 * 335.26133 * 19 18 17 22 22 N 1.30821 * 120.00239 * 342.23499 * 21 19 18 23 23 Si 1.86807 * 119.99901 * 162.23840 * 21 19 18 24 24 H 1.48506 * 109.46966 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47135 * 120.00149 * 23 21 19 26 26 H 1.48498 * 109.47125 * 240.00464 * 23 21 19 27 27 C 1.37592 * 119.87756 * 89.99993 * 14 11 10 28 28 H 1.09002 * 109.47318 * 300.00233 * 1 2 3 29 29 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47456 * 59.99808 * 1 2 3 31 31 H 1.08995 * 109.46783 * 54.99900 * 5 3 2 32 32 H 1.09001 * 109.46939 * 175.00179 * 5 3 2 33 33 H 0.96700 * 113.99262 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47150 * 300.00220 * 9 7 3 35 35 H 1.09002 * 109.46883 * 59.99709 * 9 7 3 36 36 H 1.08995 * 109.47411 * 179.97438 * 9 7 3 37 37 H 0.96998 * 120.00529 * 34.99883 * 10 7 3 38 38 H 1.08002 * 119.75283 * 0.02562 * 15 14 11 39 39 H 1.08001 * 119.87303 * 180.25414 * 16 15 14 40 40 H 1.08008 * 120.12286 * 179.74929 * 17 16 15 41 41 H 0.97001 * 120.00159 * 179.97438 * 22 21 19 42 42 H 1.08002 * 120.12797 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7427 2.4016 -1.3073 6 8 2.4730 1.8450 -2.4024 7 6 3.7369 1.9412 0.1258 8 1 4.2295 1.4546 -0.7160 9 6 4.2162 1.3072 1.4331 10 7 4.0664 3.3687 0.1264 11 16 5.4628 3.8964 -0.5905 12 8 5.4748 5.3107 -0.4530 13 8 6.5039 3.0596 -0.1057 14 6 5.3210 3.5653 -2.3154 15 6 5.7656 2.3550 -2.8251 16 6 5.6550 2.0786 -4.1790 17 6 5.1118 3.0099 -5.0345 18 6 4.6625 4.2438 -4.5293 19 6 4.1022 5.2078 -5.3987 20 1 3.4152 5.9472 -5.0142 21 6 4.4379 5.2040 -6.7573 22 7 5.5027 4.5635 -7.1662 23 14 3.3654 6.1136 -7.9869 24 1 2.2290 6.7522 -7.2753 25 1 4.1715 7.1570 -8.6701 26 1 2.8427 5.1543 -8.9927 27 6 4.7746 4.5111 -3.1521 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.6796 2.2010 -1.4400 32 1 1.9075 3.4785 -1.2706 33 1 2.2210 2.2021 -3.2650 34 1 3.7236 1.7937 2.2750 35 1 3.9710 0.2451 1.4331 36 1 5.2955 1.4305 1.5225 37 1 3.4667 4.0047 0.5467 38 1 6.1969 1.6200 -2.1616 39 1 6.0009 1.1309 -4.5646 40 1 5.0303 2.7941 -6.0897 41 1 5.7352 4.5605 -8.1079 42 1 4.4325 5.4548 -2.7536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:56 Heat of formation + Delta-G solvation = -108.961584 kcal Electronic energy + Delta-G solvation = -27150.727184 eV Core-core repulsion = 23348.704836 eV Total energy + Delta-G solvation = -3802.022348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -37.99716 -37.54310 -36.62120 -35.52249 -35.26300 -33.80624 -30.95950 -30.03082 -29.74599 -29.55742 -28.39706 -25.45133 -23.45533 -21.86630 -21.27628 -20.87326 -19.28455 -18.05089 -17.33668 -17.12932 -16.21731 -15.90167 -15.87224 -15.17442 -14.93516 -14.75154 -14.54586 -14.41549 -13.72855 -13.44242 -13.43264 -13.31790 -13.15978 -12.64718 -12.55139 -12.34856 -12.18711 -11.88354 -11.58608 -11.52302 -11.48728 -11.40543 -11.33688 -11.31251 -10.99391 -10.84547 -10.83724 -10.56999 -10.02038 -9.80634 -9.67286 -9.62187 -9.32967 -9.17296 -7.96134 -7.64043 -7.63721 -6.89440 -4.50513 0.99786 1.56573 2.26789 2.46399 2.66946 3.00231 3.04097 3.07431 3.61023 3.83576 4.20725 4.32758 4.47266 4.52272 4.77768 4.94344 4.98345 5.00657 5.19927 5.33345 5.41617 5.47619 5.53211 5.57710 5.61294 5.64678 5.93451 6.11232 6.22802 6.29309 6.34277 6.69986 6.81151 6.89096 7.06024 7.17832 7.27636 7.44318 7.79277 7.83746 7.92456 7.98913 8.43840 8.70813 8.76061 10.06322 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004231 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.088109 B = 6615.478987 C = 7840.703822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.220 6.220 3 C -0.063 4.063 4 H 0.099 0.901 5 C 0.082 3.918 6 O -0.542 6.542 7 C 0.179 3.821 8 H 0.109 0.891 9 C -0.174 4.174 10 N -1.114 6.114 11 S 2.685 3.315 12 O -0.975 6.975 13 O -0.973 6.973 14 C -0.621 4.621 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.113 4.113 18 C 0.093 3.907 19 C -0.465 4.465 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.795 5.795 23 Si 0.908 3.092 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.125 4.125 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.384 0.616 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.282 0.718 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -6.234 10.235 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.005 5.995 3 C -0.193 4.193 4 H 0.117 0.883 5 C 0.001 3.999 6 O -0.347 6.347 7 C 0.071 3.929 8 H 0.127 0.873 9 C -0.233 4.233 10 N -0.870 5.870 11 S 2.781 3.219 12 O -0.966 6.966 13 O -0.963 6.963 14 C -0.714 4.714 15 C -0.147 4.147 16 C -0.135 4.135 17 C -0.133 4.133 18 C 0.089 3.911 19 C -0.495 4.495 20 H 0.097 0.903 21 C -0.141 4.141 22 N -0.421 5.421 23 Si 0.732 3.268 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.146 4.146 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.243 0.757 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.256 -7.224 10.909 15.471 hybrid contribution -2.231 1.882 -1.632 3.344 sum -10.487 -5.342 9.277 14.986 Atomic orbital electron populations 1.23448 0.95506 1.06296 1.04634 1.86878 1.05783 1.09142 1.97667 1.23635 1.00430 0.95366 0.99894 0.88313 1.22083 0.93840 0.96869 0.87092 1.86549 1.64090 1.67198 1.16907 1.20338 0.91931 0.80516 1.00087 0.87293 1.22434 1.02926 1.01382 0.96582 1.55758 1.43606 1.14059 1.73623 1.01794 0.72449 0.72701 0.74942 1.93537 1.85970 1.29743 1.87313 1.93515 1.53430 1.69137 1.80231 1.29544 1.16418 1.04117 1.21301 1.20011 1.04036 0.94955 0.95734 1.20749 1.00967 0.98381 0.93450 1.21590 0.99782 0.92563 0.99376 1.17603 0.90456 0.92107 0.90903 1.19574 1.24427 1.13241 0.92237 0.90251 1.25886 0.94062 0.94665 0.99532 1.69791 1.19928 1.34669 1.17671 0.86266 0.80815 0.79661 0.80037 1.18420 1.19936 1.19700 1.20643 1.02920 0.96490 0.94566 0.90856 0.88198 0.90543 0.94340 0.92531 0.76829 0.92343 0.90594 0.90718 0.75725 0.87966 0.88662 0.86043 0.90715 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 10.45 101.05 1.06 0.00 16 2 S -0.22 -2.50 20.10 -107.50 -2.16 -4.66 16 3 C -0.06 -0.70 2.34 -26.73 -0.06 -0.76 16 4 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 5 C 0.08 0.95 6.35 37.16 0.24 1.19 16 6 O -0.54 -7.75 12.53 -35.23 -0.44 -8.19 16 7 C 0.18 2.38 2.16 -67.93 -0.15 2.24 16 8 H 0.11 1.71 6.66 -51.93 -0.35 1.36 16 9 C -0.17 -2.12 9.28 37.16 0.34 -1.77 16 10 N -1.11 -15.37 4.80 -4.89 -0.02 -15.39 16 11 S 2.68 49.84 5.65 -107.50 -0.61 49.23 16 12 O -0.98 -20.47 17.27 -57.17 -0.99 -21.45 16 13 O -0.97 -19.89 16.52 -57.17 -0.94 -20.84 16 14 C -0.62 -13.00 5.81 -39.66 -0.23 -13.23 16 15 C -0.13 -2.66 8.92 -39.29 -0.35 -3.01 16 16 C -0.12 -2.52 10.02 -39.66 -0.40 -2.92 16 17 C -0.11 -2.68 8.70 -38.87 -0.34 -3.02 16 18 C 0.09 2.26 5.57 -106.83 -0.60 1.66 16 19 C -0.47 -11.44 9.05 -37.74 -0.34 -11.79 16 20 H 0.08 1.88 7.91 -52.48 -0.41 1.47 16 21 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.80 -19.53 10.97 55.55 0.61 -18.92 16 23 Si 0.91 17.68 29.60 -169.99 -5.03 12.65 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.12 -2.84 9.26 -38.88 -0.36 -3.20 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.08 0.61 7.02 -51.92 -0.36 0.25 16 31 H 0.04 0.39 6.72 -51.93 -0.35 0.04 16 32 H 0.06 0.66 7.76 -51.93 -0.40 0.26 16 33 H 0.38 5.09 9.12 45.56 0.42 5.51 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.88 6.91 -51.93 -0.36 0.52 16 36 H 0.07 1.02 7.64 -51.93 -0.40 0.62 16 37 H 0.41 4.52 8.84 -34.47 -0.30 4.21 16 38 H 0.10 2.03 7.59 -52.49 -0.40 1.63 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 2.97 6.18 -52.48 -0.32 2.65 16 41 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 42 H 0.11 2.36 7.60 -52.49 -0.40 1.96 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -30.20 370.68 -10.17 -40.37 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -4.89 Total: 14.52 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: -1.28 Total: -32.90 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.59 Total: -34.32 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -2.37 Total: -50.48 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 47.34 SS G_CDS: -2.77 Total: 44.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.20 -10.17 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.595 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds