Wall clock time and date at job start Wed Apr 1 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99914 * 2 1 4 4 H 1.09003 * 109.46930 * 55.00515 * 3 2 1 5 5 C 1.53000 * 109.47170 * 295.00124 * 3 2 1 6 6 O 1.42904 * 109.46607 * 294.99912 * 5 3 2 7 7 C 1.53000 * 109.47082 * 174.99785 * 3 2 1 8 8 H 1.09003 * 109.47029 * 59.99880 * 7 3 2 9 9 C 1.53000 * 109.47395 * 300.00201 * 7 3 2 10 10 N 1.46495 * 109.47106 * 180.02562 * 7 3 2 11 11 S 1.65603 * 119.99869 * 214.99993 * 10 7 3 12 12 O 1.42097 * 106.40271 * 178.53996 * 11 10 7 13 13 O 1.42093 * 106.40544 * 311.46401 * 11 10 7 14 14 C 1.76208 * 107.21696 * 65.00226 * 11 10 7 15 15 C 1.38659 * 119.87169 * 269.72514 * 14 11 10 16 16 C 1.38618 * 120.49691 * 179.71884 * 15 14 11 17 17 C 1.37637 * 120.24526 * 0.55885 * 16 15 14 18 18 C 1.40695 * 119.74824 * 359.71574 * 17 16 15 19 19 C 1.41393 * 120.24226 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99778 * 155.26182 * 19 18 17 21 21 C 1.39945 * 120.00209 * 335.26133 * 19 18 17 22 22 N 1.30821 * 120.00239 * 342.23499 * 21 19 18 23 23 Si 1.86807 * 119.99901 * 162.23840 * 21 19 18 24 24 H 1.48506 * 109.46966 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47135 * 120.00149 * 23 21 19 26 26 H 1.48498 * 109.47125 * 240.00464 * 23 21 19 27 27 C 1.37592 * 119.87756 * 89.99993 * 14 11 10 28 28 H 1.09002 * 109.47318 * 300.00233 * 1 2 3 29 29 H 1.09000 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47456 * 59.99808 * 1 2 3 31 31 H 1.08995 * 109.46783 * 54.99900 * 5 3 2 32 32 H 1.09001 * 109.46939 * 175.00179 * 5 3 2 33 33 H 0.96700 * 113.99262 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47150 * 300.00220 * 9 7 3 35 35 H 1.09002 * 109.46883 * 59.99709 * 9 7 3 36 36 H 1.08995 * 109.47411 * 179.97438 * 9 7 3 37 37 H 0.96998 * 120.00529 * 34.99883 * 10 7 3 38 38 H 1.08002 * 119.75283 * 0.02562 * 15 14 11 39 39 H 1.08001 * 119.87303 * 180.25414 * 16 15 14 40 40 H 1.08008 * 120.12286 * 179.74929 * 17 16 15 41 41 H 0.97001 * 120.00159 * 179.97438 * 22 21 19 42 42 H 1.08002 * 120.12797 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7427 2.4016 -1.3073 6 8 2.4730 1.8450 -2.4024 7 6 3.7369 1.9412 0.1258 8 1 4.2295 1.4546 -0.7160 9 6 4.2162 1.3072 1.4331 10 7 4.0664 3.3687 0.1264 11 16 5.4628 3.8964 -0.5905 12 8 5.4748 5.3107 -0.4530 13 8 6.5039 3.0596 -0.1057 14 6 5.3210 3.5653 -2.3154 15 6 5.7656 2.3550 -2.8251 16 6 5.6550 2.0786 -4.1790 17 6 5.1118 3.0099 -5.0345 18 6 4.6625 4.2438 -4.5293 19 6 4.1022 5.2078 -5.3987 20 1 3.4152 5.9472 -5.0142 21 6 4.4379 5.2040 -6.7573 22 7 5.5027 4.5635 -7.1662 23 14 3.3654 6.1136 -7.9869 24 1 2.2290 6.7522 -7.2753 25 1 4.1715 7.1570 -8.6701 26 1 2.8427 5.1543 -8.9927 27 6 4.7746 4.5111 -3.1521 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.6796 2.2010 -1.4400 32 1 1.9075 3.4785 -1.2706 33 1 2.2210 2.2021 -3.2650 34 1 3.7236 1.7937 2.2750 35 1 3.9710 0.2451 1.4331 36 1 5.2955 1.4305 1.5225 37 1 3.4667 4.0047 0.5467 38 1 6.1969 1.6200 -2.1616 39 1 6.0009 1.1309 -4.5646 40 1 5.0303 2.7941 -6.0897 41 1 5.7352 4.5605 -8.1079 42 1 4.4325 5.4548 -2.7536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:55 Heat of formation + Delta-G solvation = -130.794488 kcal Electronic energy + Delta-G solvation = -27151.673930 eV Core-core repulsion = 23348.704836 eV Total energy + Delta-G solvation = -3802.969094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.40352 -38.96443 -38.20012 -36.90420 -36.59936 -35.59006 -32.03836 -31.82599 -31.49927 -30.42056 -29.16743 -27.26412 -24.42467 -23.58834 -22.75618 -22.20800 -20.74135 -19.66449 -18.66883 -18.33772 -17.65145 -17.35597 -16.95376 -16.78179 -16.46257 -16.05767 -15.79514 -15.46023 -15.15107 -15.02409 -14.46431 -14.35528 -14.24169 -13.99980 -13.65533 -13.58501 -13.38869 -13.24582 -13.15740 -13.10923 -13.02784 -13.01086 -12.78424 -12.62621 -12.54208 -12.27835 -12.16734 -11.91151 -11.47626 -11.32295 -11.09277 -10.89085 -10.62593 -10.44156 -9.72442 -9.44412 -8.66599 -8.49100 -6.36923 -0.49068 0.52157 0.72247 0.94271 1.40096 1.47989 1.54050 1.70349 2.18274 2.21980 2.61685 2.83229 3.33395 3.49725 3.56880 3.62675 3.87039 4.18779 4.32656 4.36261 4.40880 4.42847 4.47575 4.51527 4.57100 4.65052 4.70358 4.92358 4.95635 4.97876 5.00010 5.14431 5.23830 5.29283 5.37861 5.50701 5.66897 5.99991 6.02097 6.11888 6.19171 6.61699 6.88679 6.90444 6.94564 8.31505 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004231 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.088109 B = 6615.478987 C = 7840.703822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.264 6.264 3 C -0.054 4.054 4 H 0.128 0.872 5 C 0.075 3.925 6 O -0.562 6.562 7 C 0.176 3.824 8 H 0.084 0.916 9 C -0.171 4.171 10 N -1.094 6.094 11 S 2.712 3.288 12 O -0.998 6.998 13 O -0.989 6.989 14 C -0.623 4.623 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.072 3.928 19 C -0.497 4.497 20 H 0.079 0.921 21 C 0.038 3.962 22 N -0.828 5.828 23 Si 0.979 3.021 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.264 1.264 27 C -0.135 4.135 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.384 0.616 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.426 0.574 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.289 0.711 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 -6.422 11.366 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.038 6.038 3 C -0.184 4.184 4 H 0.146 0.854 5 C -0.004 4.004 6 O -0.368 6.368 7 C 0.068 3.932 8 H 0.102 0.898 9 C -0.230 4.230 10 N -0.856 5.856 11 S 2.805 3.195 12 O -0.988 6.988 13 O -0.979 6.979 14 C -0.713 4.713 15 C -0.146 4.146 16 C -0.136 4.136 17 C -0.148 4.148 18 C 0.069 3.931 19 C -0.526 4.526 20 H 0.097 0.903 21 C -0.177 4.177 22 N -0.455 5.455 23 Si 0.800 3.200 24 H -0.180 1.180 25 H -0.197 1.197 26 H -0.188 1.188 27 C -0.156 4.156 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.231 0.769 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.046 -7.414 12.031 17.339 hybrid contribution -1.690 1.840 -1.855 3.112 sum -11.736 -5.574 10.176 16.504 Atomic orbital electron populations 1.23499 0.92178 1.07341 1.05630 1.87053 1.09479 1.09542 1.97776 1.23586 0.98778 0.95455 1.00549 0.85429 1.22274 0.94821 0.96740 0.86610 1.86533 1.65014 1.67702 1.17549 1.20410 0.93566 0.79341 0.99900 0.89814 1.22398 1.01974 1.01988 0.96613 1.55277 1.42772 1.14993 1.72553 1.00942 0.73005 0.71776 0.73748 1.93503 1.86735 1.31356 1.87243 1.93496 1.55043 1.69434 1.79920 1.29919 1.14885 1.03415 1.23077 1.20227 1.03431 0.95300 0.95690 1.20971 1.00232 0.98795 0.93636 1.21512 1.01195 0.93111 0.99016 1.17857 0.90944 0.92506 0.91763 1.19820 1.25411 1.13956 0.93428 0.90324 1.26681 0.94854 0.95291 1.00846 1.69842 1.21209 1.35935 1.18475 0.85197 0.78906 0.78385 0.77480 1.17993 1.19710 1.18837 1.20671 1.03651 0.96962 0.94359 0.89005 0.87161 0.90334 0.92318 0.92680 0.76856 0.90032 0.89976 0.92422 0.73680 0.86637 0.86710 0.87394 0.90055 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.45 113.37 1.18 -0.37 16 2 S -0.26 -5.46 20.10 -56.49 -1.14 -6.59 16 3 C -0.05 -1.07 2.34 30.59 0.07 -1.00 16 4 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.08 1.63 6.35 71.98 0.46 2.09 16 6 O -0.56 -15.91 12.53 -148.98 -1.87 -17.78 16 7 C 0.18 4.38 2.16 44.99 0.10 4.47 16 8 H 0.08 2.57 6.66 -2.39 -0.02 2.55 16 9 C -0.17 -3.81 9.28 71.98 0.67 -3.14 16 10 N -1.09 -28.43 4.80 -169.39 -0.81 -29.24 16 11 S 2.71 98.81 5.65 -56.49 -0.32 98.49 16 12 O -1.00 -41.28 17.27 -128.00 -2.21 -43.49 16 13 O -0.99 -39.68 16.52 -128.00 -2.11 -41.79 16 14 C -0.62 -26.15 5.81 22.22 0.13 -26.02 16 15 C -0.13 -5.29 8.92 22.46 0.20 -5.09 16 16 C -0.12 -5.13 10.02 22.22 0.22 -4.91 16 17 C -0.13 -6.25 8.70 22.73 0.20 -6.05 16 18 C 0.07 3.63 5.57 -21.29 -0.12 3.51 16 19 C -0.50 -25.05 9.05 23.46 0.21 -24.83 16 20 H 0.08 3.82 7.91 -2.91 -0.02 3.80 16 21 C 0.04 1.82 5.14 85.26 0.44 2.26 16 22 N -0.83 -41.52 10.97 21.83 0.24 -41.29 16 23 Si 0.98 36.35 29.60 68.60 2.03 38.38 16 24 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 25 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 27 C -0.14 -6.27 9.26 22.73 0.21 -6.06 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.02 7.02 -2.39 -0.02 1.01 16 31 H 0.06 1.04 6.72 -2.39 -0.02 1.02 16 32 H 0.06 1.20 7.76 -2.39 -0.02 1.18 16 33 H 0.38 10.42 9.12 -74.06 -0.68 9.75 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.75 6.91 -2.39 -0.02 1.73 16 36 H 0.06 1.49 7.64 -2.39 -0.02 1.47 16 37 H 0.43 8.39 8.84 -96.75 -0.85 7.54 16 38 H 0.12 4.53 7.59 -2.91 -0.02 4.51 16 39 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.11 5.49 6.18 -2.91 -0.02 5.47 16 41 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 42 H 0.10 4.78 7.60 -2.91 -0.02 4.76 16 Total: -1.00 -65.33 370.68 -2.69 -68.02 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.47 Total: 40.44 kcal Atomic # 6 Polarization: -69.12 SS G_CDS: 3.97 Total: -65.15 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.57 Total: -70.53 kcal Atomic # 8 Polarization: -96.87 SS G_CDS: -6.19 Total: -103.06 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Atomic # 16 Polarization: 93.35 SS G_CDS: -1.45 Total: 91.90 kcal Total: -65.33 -2.69 -68.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.774 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds